Clone BO07477 Report

Search the DGRC for BO07477

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:77
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO07477.pep: validated full length
Sequenced Size:952

Clone Sequence Records

BO07477.3prime Sequence

910 bp (762 high quality bases) assembled on 2006-01-06

> BO07477.3prime
ATGGTCTAGAAAGCTTGCATATTGCAGAGATGAAACCATATTATCCCTGC
TAACATTCCGGTGAAACTTCTGCTGGTTGATAATCAAGGCGATTCCTGCG
TTCTCCCGGGTCAACTTAAGAGCATCTATTTGTGTGGAACAGTACGACTG
CTGGTTATCCGATTCAATCTCTTGCTTGACTGCCATCGCAGCAGTGCCAG
CCGCATCTGGCTCCGGAGCGTTACTAATGATGGTGTCTTTGAGCAAATTT
GCTTGCGCCTGCAGACCGTTGGACTTCAAATGGCCGACCAGCAGCTGAAC
ATCGCTGCCTGCGGCATTTATGTCCCCTAACTTTATGCTCCTTCTGGTCA
GCCAGTCCAGCAAAAAGATCTCCAGGTACGCGGGATCGTAGAAGCGAAGT
GGATCTCCTGCCTGCTGGCTCTCCACCTTTTCGCGAACATCTAGGAGCAA
GCGGCCACTCTGCACCAACGACAACTCCTCACACATCCTGTAGAGGCTCT
TCAACAGAGGATGGACATGCAGCGTGATCCCAGCGATATGCGGCAAGTAG
TGCATTCGCAGCTCCTGCCAGCAGAAACCCAGTCTCCGGAGCACCTTGCG
GGCCCCAATAATGCACAGGGCCTCCACGAGATGTCTTCTCCAGGTTTCTG
GCCGGGACTTGGCGAACTTTATGAGTAGATCACTTTGCGGGAAGTCTGAT
CGTGTCATGGCCAAAAGTTTCTGCAGAATGTAGGTGGCATCCGAGTGGTC
GTCGCCATAAAGCAGAAAGCAGAGGCCCACCTTTTGGGCAAGTTCATGTC
ACGTTCCACGTAGATCAGATCGTTCTGATCGATGGTGTCTAGATGAATCA
ACAGGTTTGATCCGGCCATGGCGATCGGGAATATACAAAAATGTTTCACT
TTAGGAAATG

BO07477.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7486-PC 921 Dredd-RC 146..918 791..19 3865 100 Minus
CG7486-PB 1551 Dredd-RB 146..900 791..37 3775 100 Minus
CG7486-PA 1533 Dredd-RA 146..882 791..55 3685 100 Minus
CG7486-PC 921 Dredd-RC 26..146 910..790 605 100 Minus
CG7486-PB 1551 Dredd-RB 26..146 910..790 605 100 Minus
CG7486-PA 1533 Dredd-RA 26..146 910..790 605 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dredd-RF 1689 CG7486-RF 22..914 910..19 4440 99.9 Minus
Dredd-RE 1631 CG7486-RE 22..896 910..37 4350 99.9 Minus
Dredd-RD 1613 CG7486-RD 22..878 910..55 4260 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 634528..635291 19..782 3820 100 Plus
X 23542271 X 635392..635524 779..910 615 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 00:01:23 has no hits.

BO07477.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:52 Download gff for BO07477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7486-PC 26..921 16..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:34 Download gff for BO07477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7486-PC 26..921 16..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:47 Download gff for BO07477.3prime
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 22..914 19..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:57 Download gff for BO07477.3prime
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 22..914 19..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:57 Download gff for BO07477.3prime
Subject Subject Range Query Range Percent Splice Strand
X 634528..635289 19..780 100 <- Plus
X 635394..635524 781..910 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:47 Download gff for BO07477.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 528561..529322 19..780 100 <- Plus
arm_X 529427..529557 781..910 99   Plus

BO07477.5prime Sequence

855 bp (847 high quality bases) assembled on 2006-01-06

> BO07477.5prime
GAAGTTATCAGTCGACATGTCAGCGAGTGCAATTTATCGGCCATTTCCTA
AAGTGAAACATTTTTGTATATTCCCGATCGCCATGGCCGGATCAAACCTG
TTGATTCATCTAGACACCATCGATCAGAACGATCTGATCTACGTGGAACG
TGACATGAACTTTGCCCAAAAGGTGGGCCTCTGCTTTCTGCTTTATGGCG
ACGACCACTCGGATGCCACCTACATTCTGCAGAAACTTTTGGCCATGACA
CGATCAGACTTCCCGCAAAGTGATCTACTCATAAAGTTCGCCAAGTCCCG
GCCAGAAACCTGGAGAAGACATCTCGTGGAGGCCCTGTGCATTATTGGGG
CCCGCAAGGTGCTCCGGAGACTGGGTTTCTGCTGGCAGGAGCTGCGAATG
CACTACTTGCCGCATATCGCTGGGATCACGCTGCATGTCCATCCTCTGTT
GAAGAGCCTCTACAGGATGTGTGAGGAGTTGTCGTTGGTGCAGAGTGGCC
GCTTGCTCCTAGATGTTCGCGAAAAGGTGGAGAGCCAGCAGGCAGGAGAT
CCACTTCGCTTCTACGATCCCGCGTACCTGGAGATCTTTTTGCTGGACTG
GCTGACCAGAAGGAGCATAAAGTTAGGGGACATAAATGCCGCAGGCAGCG
ATGTTCAGCTGCTGGTCGGCCATTTGAAGTCCAACGGTCTGCAGGCGCAA
GCAAATTTGCTCAAAGACACCATCATTAGTAACGCTCCGGAGCCAGATGC
GGCTGGCACTGCTGCGATGGCAGTCAAGCAAGAGATTGAATCGGATAACC
AGCAGTCGTACTGTTCCACACAAATAGATGCTCTTAAGTTGACCCGGGAG
AACGC

BO07477.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7486-PB 1551 Dredd-RB 1..839 17..855 4195 100 Plus
CG7486-PC 921 Dredd-RC 1..839 17..855 4195 100 Plus
CG7486-PA 1533 Dredd-RA 1..839 17..855 4195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dredd-RF 1689 CG7486-RF 1..835 21..855 4175 100 Plus
Dredd-RE 1631 CG7486-RE 1..835 21..855 4175 100 Plus
Dredd-RD 1613 CG7486-RD 1..835 21..855 4175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 634607..635291 855..171 3425 100 Minus
X 23542271 X 635392..635549 174..17 790 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:22:20 has no hits.

BO07477.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:53 Download gff for BO07477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7486-PB 1..839 17..855 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:35 Download gff for BO07477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7486-PA 1..839 17..855 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:43:27 Download gff for BO07477.5prime
Subject Subject Range Query Range Percent Splice Strand
Dredd-RD 1..835 21..855 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:20 Download gff for BO07477.5prime
Subject Subject Range Query Range Percent Splice Strand
Dredd-RD 1..835 21..855 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:20 Download gff for BO07477.5prime
Subject Subject Range Query Range Percent Splice Strand
X 634607..635289 173..855 100 <- Minus
X 635394..635553 12..172 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:43:27 Download gff for BO07477.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 528640..529322 173..855 100 <- Minus
arm_X 529427..529586 12..172 98   Minus

BO07477.complete Sequence

952 bp (952 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630802

> BO07477.complete
GAAGTTATCAGTCGACATGTCAGCGAGTGCAATTTATCGGCCATTTCCTA
AAGTGAAACATTTTTGTATATTCCCGATCGCCATGGCCGGATCAAACCTG
TTGATTCATCTAGACACCATCGATCAGAACGATCTGATCTACGTGGAACG
TGACATGAACTTTGCCCAAAAGGTGGGCCTCTGCTTTCTGCTTTATGGCG
ACGACCACTCGGATGCCACCTACATTCTGCAGAAACTTTTGGCCATGACA
CGATCAGACTTCCCGCAAAGTGATCTACTCATAAAGTTCGCCAAGTCCCG
GCCAGAAACCTGGAGAAGACATCTCGTGGAGGCCCTGTGCATTATTGGGG
CCCGCAAGGTGCTCCGGAGACTGGGTTTCTGCTGGCAGGAGCTGCGAATG
CACTACTTGCCGCATATCGCTGGGATCACGCTGCATGTCCATCCTCTGTT
GAAGAGCCTCTACAGGATGTGTGAGGAGTTGTCGTTGGTGCAGAGTGGCC
GCTTGCTCCTAGATGTTCGCGAAAAGGTGGAGAGCCAGCAGGCAGGAGAT
CCACTTCGCTTCTACGATCCCGCGTACCTGGAGATCTTTTTGCTGGACTG
GCTGACCAGAAGGAGCATAAAGTTAGGGGACATAAATGCCGCAGGCAGCG
ATGTTCAGCTGCTGGTCGGCCATTTGAAGTCCAACGGTCTGCAGGCGCAA
GCAAATTTGCTCAAAGACACCATCATTAGTAACGCTCCGGAGCCAGATGC
GGCTGGCACTGCTGCGATGGCAGTCAAGCAAGAGATTGAATCGGATAACC
AGCAGTCGTACTGTTCCACACAAATAGATGCTCTTAAGTTGACCCGGGAG
AACGCAGGAATCGCCTTGATTATCAACCAGCAGAAGTTTCACCGGAATGT
TAGCAGGGATAATATGGTTTCATCTCTGCAATATGCAAGCTTTCTAGACC
AT

BO07477.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dredd-RF 855 CG7486-PF 1..852 83..934 4260 100 Plus
Dredd-RE 1485 CG7486-PE 1..834 83..916 4170 100 Plus
Dredd-RD 1467 CG7486-PD 1..816 83..898 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dredd-RF 1689 CG7486-RF 1..914 21..934 4570 100 Plus
Dredd-RE 1631 CG7486-RE 1..896 21..916 4480 100 Plus
Dredd-RD 1613 CG7486-RD 1..878 21..898 4390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 634528..635291 934..171 3820 100 Minus
X 23542271 X 635392..635549 174..17 790 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:24:46 has no hits.

BO07477.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:23 Download gff for BO07477.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 1..855 83..937 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:16 Download gff for BO07477.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 175..1096 12..934 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:04 Download gff for BO07477.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 1..914 21..936 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:23 Download gff for BO07477.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 175..1096 12..934 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:23 Download gff for BO07477.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 1..914 21..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:23 Download gff for BO07477.complete
Subject Subject Range Query Range Percent Splice Strand
X 635394..635549 17..172 100   Minus
X 634525..635289 173..936 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:04 Download gff for BO07477.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 528558..529322 173..936 99 <- Minus
arm_X 529427..529582 17..172 100   Minus

BO07477.pep Sequence

Translation from 16 to 952

> BO07477.pep
MSASAIYRPFPKVKHFCIFPIAMAGSNLLIHLDTIDQNDLIYVERDMNFA
QKVGLCFLLYGDDHSDATYILQKLLAMTRSDFPQSDLLIKFAKSRPETWR
RHLVEALCIIGARKVLRRLGFCWQELRMHYLPHIAGITLHVHPLLKSLYR
MCEELSLVQSGRLLLDVREKVESQQAGDPLRFYDPAYLEIFLLDWLTRRS
IKLGDINAAGSDVQLLVGHLKSNGLQAQANLLKDTIISNAPEPDAAGTAA
MAVKQEIESDNQQSYCSTQIDALKLTRENAGIALIINQQKFHRNVSRDNM
VSSLQYASFLDH

BO07477.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dredd-PF 284 CG7486-PF 1..284 23..306 1456 100 Plus
Dredd-PE 494 CG7486-PE 1..278 23..300 1428 100 Plus
Dredd-PD 488 CG7486-PD 1..272 23..294 1398 100 Plus
Dredd-PG 440 CG7486-PG 1..224 77..300 1149 100 Plus