Clone BO07478 Report

Search the DGRC for BO07478

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG4525-RA
Protein status:BO07478.pep: validated full length
Sequenced Size:1744

Clone Sequence Records

BO07478.3prime Sequence

916 bp (806 high quality bases) assembled on 2006-01-06

> BO07478.3prime
ATGGTCTAGAAAGCTTGCTTTAAAATGATTGATGTGCTTTCGAATCGTTT
TGATCATGGCCTCAGCCTGCGAGTTCGACGAGTCGCGTAGGATGCCGATG
ACCTCTGAGATTCCTCCACCAGGACGACCTCTTTGTGCCTTGGTGCACAA
GGCGAACAAAACTCCGGCGCAGGCGCCCCTTTTGCCCTCCCAATTCTCCG
GACTGGGATCTAGTTTTTCGAGCATATCAAATGCTTTGGCTGCCACCCAA
AATTCGGCACACTTGTAACACTCATTGGCAATCAGTTGCAACAGGATAAA
TGCCTCCGCATTCGTATCCCTGGTGATGAATACATTCCAAGCTAGCTCAG
GGTGACCGCAATGTATGTGGCACTTGGCCAGGATCATGCAGTAGGTATGC
TGGTTCTTGATATCCATGTCGGAGATCTGCATCAGCAACTCCTCCGCCTC
CTTGTAATATCCTGTGGCGCATTTCGCCTGGGCAAAGTTATAGTTGAAAA
CATCGTCGTTCACGAAGTAACTGCGAATGGAGTTCATGTAGACCAGCACC
TCCTCGAATTGCTCGTAGAGGAAAAAGGCGGAGGCCATACTCTGACGACC
CGGTATAGTGTCACACTCTGTTGCCGAACTGCCCACCAAATGCAGGTTTT
GCTGGGCCGTCTTGATGTGCTCTTTCGATCCCAATTGCTGGCCCAGGGCG
GCATGGACCACTCCTTTGAGTATGTACTCATGCGGCGAAGTTGGCTGTAG
TTCCTTCATCAGAGCATGAGCTTCCTGAACATCGCCCTGCTTCAGATAGT
ATATAGCCAGATTCAAGCGAGCCTCAGGAATGATATTCAATAATCCTGGC
AGGACTCTCAATGCCCCTTCACCGTTCCGAAAACGACCAAGTTGTGACGC
AGAAGATCGGCTCGGA

BO07478.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4525-PA 1713 CG4525-RA 846..1710 883..19 4325 100 Minus
CG4525-PA 1713 CG4525-RA 820..848 908..880 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4525-RA 1881 CG4525-RA 895..1790 913..19 4440 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15776833..15777294 676..215 2310 100 Minus
3R 32079331 3R 15776533..15776771 913..676 1130 99.2 Minus
3R 32079331 3R 15777354..15777549 214..19 980 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:30:35 has no hits.

BO07478.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:54 Download gff for BO07478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4525-PA 813..1713 15..915 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:36 Download gff for BO07478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4525-PA 813..1713 15..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:03:40 Download gff for BO07478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 934..1834 15..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:39 Download gff for BO07478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 893..1793 15..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:39 Download gff for BO07478.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15776531..15776771 676..915 98 -> Minus
3R 15776834..15777294 215..675 100 -> Minus
3R 15777354..15777552 15..214 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:03:40 Download gff for BO07478.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11602253..11602493 676..915 98 -> Minus
arm_3R 11602556..11603016 215..675 100 -> Minus
arm_3R 11603076..11603274 15..214 99   Minus

BO07478.5prime Sequence

794 bp (792 high quality bases) assembled on 2006-01-06

> BO07478.5prime
GAAGTTATCAGTCGACATGATACTTTCGCGCGGAAAAACCGACTCGGCGA
GCTCGAGAAATGCCAGCGGAGGTCCTGGCAGTGGACTCGGCGTTGGAAGG
CAGGCAAGGAAGACTCCGGCACCGGCCTCCCTAGAGGATTTCATCATCAG
GCGGGACTACACGGGAGCCCGGGCTTTTCTGGAGTTCGCCAACGACGACG
AGGACGAGGAGGAGGGTGCTCATGGATCCAAGCAGAGTCAGGTGGATCAG
TGGATTGCCTTTTGCAATTTCCATTTGGGTGACTACCAACAGGCGCTGGC
CCAATACAAGGCCATACAGCAGGGTTCGTCAACTCCTGATGGGAAATTGG
ATCTCAACCTGGCCGTGTGTATGTTCTACTTGGGCTTGTACGAGGAGGCC
CAACAACTGATGGCCAATGCGGCTGACAATCCGCTGAAGCAGCGACTCCT
CTTCCACTTGGCCCACAAGCTGGGCAACGAGGAGGAGTGGAGCCAGCTGC
AGGAGGAGCTGCAGGATTCCTCGAGCTTGGAACAGCAGCTCAGCCTGGCT
TCGATGCACTACATGCGGGCCCATTACCAGGAGGCCATCGATGTGTACAA
ACGGGTGCTGGTGGACAACAAGGAATACCAGGCCATCAATGTCTATTTGG
CCTTGTGTTTTTACAAGCTCGACTATTACGACATGTCCCAGGAGGTCTTG
GATGTGTATCTCAGTCAACATGGCGATAGTACCATAGCTATTAACCTAAA
GGCTTGCAATCGATTTCGTTTGTTCAACGGTCGTGTGGCCGAGC

BO07478.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4525-PA 1713 CG4525-RA 1..778 17..794 3890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4525-RA 1881 CG4525-RA 81..858 17..794 3890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15775885..15776496 183..794 3060 100 Plus
3R 32079331 3R 15774559..15774724 19..184 830 100 Plus
Blast to na_te.dros performed on 2015-02-12 14:09:30 has no hits.

BO07478.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:55 Download gff for BO07478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4525-PA 1..778 17..794 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:39 Download gff for BO07478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4525-PA 1..778 17..794 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:05:34 Download gff for BO07478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 122..899 17..794 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:35:58 Download gff for BO07478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 81..858 17..794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:35:58 Download gff for BO07478.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15774554..15774724 11..184 98 -> Plus
3R 15775887..15776496 185..794 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:05:34 Download gff for BO07478.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11600276..11600446 11..184 98 -> Plus
arm_3R 11601609..11602218 185..794 100   Plus

BO07478.complete Sequence

1744 bp (1744 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630803

> BO07478.complete
GAAGTTATCAGTCGACATGATACTTTCGCGCGGAAAAACCGACTCGGCGA
GCTCGAGAAATGCCAGCGGAGGTCCTGGCAGTGGACTCGGCGTTGGAAGG
CAGGCAAGGAAGACTCCGGCACCGGCCTCCCTAGAGGATTTCATCATCAG
GCGGGACTACACGGGAGCCCGGGCTTTTCTGGAGTTCGCCAACGACGACG
AGGACGAGGAGGAGGGTGCTCATGGATCCAAGCAGAGTCAGGTGGATCAG
TGGATTGCCTTTTGCAATTTCCATTTGGGTGACTACCAACAGGCGCTGGC
CCAATACAAGGCCATACAGCAGGGTTCGTCAACTCCTGATGGGAAATTGG
ATCTCAACCTGGCCGTGTGTATGTTCTACTTGGGCTTGTACGAGGAGGCC
CAACAACTGATGGCCAATGCGGCTGACAATCCGCTGAAGCAGCGACTCCT
CTTCCACTTGGCCCACAAGCTGGGCAACGAGGAGGAGTGGAGCCAGCTGC
AGGAGGAGCTGCAGGATTCCTCGAGCTTGGAACAGCAGCTCAGCCTGGCT
TCGATGCACTACATGCGGGCCCATTACCAGGAGGCCATCGATGTGTACAA
ACGGGTGCTGGTGGACAACAAGGAATACCAGGCCATCAATGTCTATTTGG
CCTTGTGTTTTTACAAGCTCGACTATTACGACATGTCCCAGGAGGTCTTG
GATGTGTATCTCAGTCAACATGGCGATAGTACCATAGCTATTAACCTAAA
GGCTTGCAATCGATTTCGTTTGTTCAACGGTCGTGTGGCCGAGCAGGAAA
TCAAGAATATAGCCGATAATGGCACCTTCGGAGCGGATCTTCTGCGTCAC
AACTTGGTCGTTTTTCGGAACGGTGAAGGGGCATTGAGAGTCCTGCCAGG
ATTATTGAATATCATTCCTGAGGCTCGCTTGAATCTGGCTATATACTATC
TGAAGCAGGGCGATGTTCAGGAAGCTCATGCTCTGATGAAGGAACTACAG
CCAACTTCGCCGCATGAGTACATACTCAAAGGAGTGGTCCATGCCGCCCT
GGGCCAGCAATTGGGATCGAAAGAGCACATCAAGACGGCCCAGCAAAACC
TGCATTTGGTGGGCAGTTCGGCAACAGAGTGTGACACTATACCGGGTCGT
CAGAGTATGGCCTCCGCCTTTTTCCTCTACGAGCAATTCGAGGAGGTGCT
GGTCTACATGAACTCCATTCGCAGTTACTTCGTGAACGACGATGTTTTCA
ACTATAACTTTGCCCAGGCGAAATGCGCCACAGGATATTACAAGGAGGCG
GAGGAGTTGCTGATGCAGATCTCCGACATGGATATCAAGAACCAGCATAC
CTACTGCATGATCCTGGCCAAGTGCCACATACATTGCGGTCACCCTGAGC
TAGCTTGGAATGTATTCATCACCAGGGATACGAATGCGGAGGCATTTATC
CTGTTGCAACTGATTGCCAATGAGTGTTACAAGTGTGCCGAATTTTGGGT
GGCAGCCAAAGCATTTGATATGCTCGAAAAACTAGATCCCAGTCCGGAGA
ATTGGGAGGGCAAAAGGGGCGCCTGCGCCGGAGTTTTGTTCGCCTTGTGC
ACCAAGGCACAAAGAGGTCGTCCTGGTGGAGGAATCTCAGAGGTCATCGG
CATCCTACGCGACTCGTCGAACTCGCAGGCTGAGGCCATGATCAAAACGA
TTCGAAAGCACATCAATCATTTTAAAGCAAGCTTTCTAGACCAT

BO07478.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4525-RA 1713 CG4525-PA 1..1710 17..1726 8550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4525-RA 1881 CG4525-RA 81..1790 17..1726 8550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15775885..15776771 183..1069 4435 100 Plus
3R 32079331 3R 15776833..15777294 1069..1530 2310 100 Plus
3R 32079331 3R 15777354..15777549 1531..1726 980 100 Plus
3R 32079331 3R 15774559..15774724 19..184 830 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:59:38 has no hits.

BO07478.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:05 Download gff for BO07478.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 1..1713 17..1730 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:04 Download gff for BO07478.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 122..1834 17..1730 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:15 Download gff for BO07478.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 122..1831 17..1728 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:05 Download gff for BO07478.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 122..1834 17..1730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:43 Download gff for BO07478.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 81..1790 17..1728 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:43 Download gff for BO07478.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15777354..15777549 1531..1728 98   Plus
3R 15774558..15774724 17..184 99 -> Plus
3R 15775887..15776771 185..1069 100 -> Plus
3R 15776834..15777294 1070..1530 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:15 Download gff for BO07478.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11600280..11600446 17..184 99 -> Plus
arm_3R 11601609..11602493 185..1069 100 -> Plus
arm_3R 11602556..11603016 1070..1530 100 -> Plus
arm_3R 11603076..11603271 1531..1728 98   Plus

BO07478.pep Sequence

Translation from 16 to 1744

> BO07478.pep
MILSRGKTDSASSRNASGGPGSGLGVGRQARKTPAPASLEDFIIRRDYTG
ARAFLEFANDDEDEEEGAHGSKQSQVDQWIAFCNFHLGDYQQALAQYKAI
QQGSSTPDGKLDLNLAVCMFYLGLYEEAQQLMANAADNPLKQRLLFHLAH
KLGNEEEWSQLQEELQDSSSLEQQLSLASMHYMRAHYQEAIDVYKRVLVD
NKEYQAINVYLALCFYKLDYYDMSQEVLDVYLSQHGDSTIAINLKACNRF
RLFNGRVAEQEIKNIADNGTFGADLLRHNLVVFRNGEGALRVLPGLLNII
PEARLNLAIYYLKQGDVQEAHALMKELQPTSPHEYILKGVVHAALGQQLG
SKEHIKTAQQNLHLVGSSATECDTIPGRQSMASAFFLYEQFEEVLVYMNS
IRSYFVNDDVFNYNFAQAKCATGYYKEAEELLMQISDMDIKNQHTYCMIL
AKCHIHCGHPELAWNVFITRDTNAEAFILLQLIANECYKCAEFWVAAKAF
DMLEKLDPSPENWEGKRGACAGVLFALCTKAQRGRPGGGISEVIGILRDS
SNSQAEAMIKTIRKHINHFKASFLDH

BO07478.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4525-PA 570 CG4525-PA 1..570 1..570 2979 100 Plus