Clone BO07482 Report

Search the DGRC for BO07482

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG8503-RA
Protein status:BO07482.pep: validated full length
Sequenced Size:1573

Clone Sequence Records

BO07482.3prime Sequence

887 bp (841 high quality bases) assembled on 2006-01-06

> BO07482.3prime
ATGGTCTAGAAAGCTTGCGGACATGACCATGCGAAGGGCATCGCGGTTGA
TCTTGGCCTGCTTAAGCACGTGACCCTCGATGAAGATGTCCGACTCGTAT
TTCAGATAGTTGACGCACTTGTCCACATAAAACAGGGACTCCTCCAGTCG
ATCCTTGGGCGACAGGCTCGTTTCAAGGGCTACACGACGAGTCTGTTCGG
CAATTGCCGAGTGCAGTTCGAAGCAAAGCGTGCCGAGCGTGCGAACTTCG
CACGGCGTCAGTTTCTCGTACAACTCAACAAGTTCCCTAGCGAAATTGAG
CTTTAGCAGCAGTCTGTCATCCGGGATCACCATTAGCTCCTTCTGATCCT
TGGCCAGCAGCTGAACGAGCAGGATTTTAATCTCACTCATGTGAAAATGC
TGTGGCGGCAGCCACTTTTCGTAATGCTTGAGGTATTTTAATCCATTTTC
AGCGATTTTCTCCATGCTCTGAATGTCTTTGCCAGCCCGTTCCAAAATGC
GTTCCACATAGTGTTTCTGGACCTGCTTGTGGCACTCGCGACAGCGCCAA
CTGCCGTTCCATTCGTCCGCCTTGGTGGGCAGCATCAATCCGCCGCACTG
GCGATCCTCGCACTTAATAGCGCTGTAGTTGGTGTCCAACTCGGTGACAT
CCACACATCTCTCGCAGGCACACTTGAACAGCTTTGTCTGCATCAGGTGG
CGCTGGCGATCGGCGGTGCCCCACATGGCGTCCGAGTAGCAGATGCTCAG
GTGGGCGTTCTTCTTGATCTCGCGCGGTGCCCAGAGGATGCAGTGTCCGT
TCTTGTTGAAGCTCTTGGCCAGATTGGGCAGGCAGGAGTTCTCCCGTAAG
GAGGCGGTATAAAAGACCGCTACATGAGATGGATCAG

BO07482.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8503-PA 1542 CG8503-RA 714..1539 844..19 4130 100 Minus
CG8503-PA 1542 CG8503-RA 671..710 887..848 200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8503-RA 1774 CG8503-RA 831..1699 887..19 4300 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14244928..14245270 887..545 1670 99.1 Minus
2R 25286936 2R 14245759..14245991 251..19 1165 100 Minus
2R 25286936 2R 14245500..14245685 436..251 930 100 Minus
2R 25286936 2R 14245335..14245443 545..437 545 100 Minus
Blast to na_te.dros performed 2015-02-13 05:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 1482..1586 696..593 117 58.1 Minus

BO07482.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:01 Download gff for BO07482.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8503-PA 671..1542 18..887 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:48 Download gff for BO07482.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8503-PA 671..1542 18..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:03:44 Download gff for BO07482.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 831..1704 13..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:59 Download gff for BO07482.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 831..1704 13..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:59 Download gff for BO07482.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14244928..14245270 545..887 99 -> Minus
2R 14245336..14245443 437..544 100 -> Minus
2R 14245500..14245684 252..436 100 -> Minus
2R 14245759..14245996 13..251 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:03:44 Download gff for BO07482.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10132433..10132775 545..887 99 -> Minus
arm_2R 10132841..10132948 437..544 100 -> Minus
arm_2R 10133005..10133189 252..436 100 -> Minus
arm_2R 10133264..10133501 13..251 98   Minus

BO07482.5prime Sequence

937 bp (860 high quality bases) assembled on 2006-01-06

> BO07482.5prime
GAAGTTATCAGTCGACATGAATCCCTGCCATGTGTGCGAGGAGCCGACGA
AGAACAAGTGCTCCAACTGTAACCAGGTCTCCTACTGCAGTGTCCAGCAC
CAGAAGCAGGACTGGAAAGTGCACAAGCCAAGCTGTCATCCATTCAAGAT
CGCCCACAATGAGCAGCTGGGCCGGCATCTGGTGGCCACCCGCACCATTA
AACCATACGAGATAGTCCTGAAGGAGGCGCCTCTGGTCCGGGGACCAGCA
CAGATCTCCGCACCCGTTTGCCTGGGCTGTTTGAACGGCATCGAGGCGGA
GGATCACATCGAGTGCGAGCAGTGCGGTTGGCCGCTGTGCGGACCGGAGT
GCAAGTCCCTGGATGAGCACAAGGCGGAGTGCGGTCTGACCAAGGATCGG
GGTCAGAAGGTTAATGTGCAGGAGTTCGGTGGACCACATCCCCTGTACAC
GTGTTTGAGCACCGTAAGGTGCCTGCTGATTGGCGAAACAAGTACGGAGA
AGGCCAGCAAGTTCCAGGACCTGGAGTCACTGGAGTCCACCAGAAGGGGG
TCCAACCAATGGAAGGCGGATCTGGTCAGCATCGGGCAGTTTATTCCAAA
GTTCTTTAAAACACAGAAGTTCACCGAGGAGGAGATTATGAAAGCAGTTG
GTGCTCTGCAAATAAATGGACACGAGGTGCCCACCACTGATCCATCTCAT
GTAGCGGTCTTTTATACCGCCTCCTTTACGGAGAACTCCTGCCTGCCCAA
TCTGGCCAAGAGCTTCAACAAGAACGGACACTGCATCCTCTGGGCACCGC
GCGAGATCAAGAAGAACGCCCACCTGAGCATCTGCTACTCGGACGCCATG
TGGGGCACCGCCGATCGCCAGCGCCACCTGATGCAGACNAAGCTGTTCAA
GTGTGCCTGCGAGAGATGTGTGAATGTCACCGAGTTG

BO07482.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8503-PA 1542 CG8503-RA 1..921 17..937 4561 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8503-RA 1774 CG8503-RA 160..1081 16..937 4584 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14244126..14244581 147..602 2280 100 Plus
2R 25286936 2R 14244842..14245178 601..937 1659 99.4 Plus
2R 25286936 2R 14243937..14244069 16..148 665 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:24:27 has no hits.

BO07482.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:03 Download gff for BO07482.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8503-PA 1..921 17..937 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:50 Download gff for BO07482.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8503-PA 1..921 17..937 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:47 Download gff for BO07482.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 160..1081 16..937 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:53:56 Download gff for BO07482.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 160..1081 16..937 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:53:56 Download gff for BO07482.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14243937..14244069 16..148 100 -> Plus
2R 14244128..14244579 149..600 100 -> Plus
2R 14244842..14245178 601..937 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:47 Download gff for BO07482.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10131442..10131574 16..148 100 -> Plus
arm_2R 10131633..10132084 149..600 100 -> Plus
arm_2R 10132347..10132683 601..937 99   Plus

BO07482.complete Sequence

1573 bp (1573 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630805

> BO07482.complete
GAAGTTATCAGTCGACATGAATCCCTGCCATGTGTGCGAGGAGCCGACGA
AGAACAAGTGCTCCAACTGTAACCAGGTCTCCTACTGCAGTGTCCAGCAC
CAGAAGCAGGACTGGAAAGTGCACAAGCCAAGCTGTCATCCATTCAAGAT
CGCCCACAATGAGCAGCTGGGCCGGCATCTGGTGGCCACCCGCACCATTA
AACCATACGAGATAGTCCTGAAGGAGGCGCCTCTGGTCCGGGGACCAGCA
CAGATCTCCGCACCCGTTTGCCTGGGCTGTTTGAACGGCATCGAGGCGGA
GGATCACATCGAGTGCGAGCAGTGCGGTTGGCCGCTGTGCGGACCGGAGT
GCAAGTCCCTGGATGAGCACAAGGCGGAGTGCGGTCTGACCAAGGATCGG
GGTCAGAAGGTTAATGTGCAGGAGTTCGGTGGACCACATCCCCTGTACAC
GTGTTTGAGCACCGTAAGGTGCCTGCTGATTGGCGAAACAAGTACGGAGA
AGGCCAGCAAGTTCCAGGACCTGGAGTCACTGGAGTCCACCAGAAGGGGG
TCCAACCAATGGAAGGCGGATCTGGTCAGCATCGGGCAGTTTATTCCAAA
GTTCTTTAAAACACAGAAGTTCACCGAGGAGGAGATTATGAAAGCAGTTG
GTGCTCTGCAAATAAATGGACACGAGGTGCCCACCACTGATCCATCTCAT
GTAGCGGTCTTTTATACCGCCTCCTTTACGGAGAACTCCTGCCTGCCCAA
TCTGGCCAAGAGCTTCAACAAGAACGGACACTGCATCCTCTGGGCACCGC
GCGAGATCAAGAAGAACGCCCACCTGAGCATCTGCTACTCGGACGCCATG
TGGGGCACCGCCGATCGCCAGCGCCACCTGATGCAGACAAAGCTGTTCAA
GTGTGCCTGCGAGAGATGTGTGGATGTCACCGAGTTGGACACCAACTACA
GCGCTATTAAGTGCGAGGATCGCCAGTGCGGCGGATTGATGCTGCCCACC
AAGGCGGACGAATGGAACGGCAGTTGGCGCTGTCGCGAGTGCCACAAGCA
GGTCCAGAAACACTATGTGGAACGCATTTTGGAACGGGCTGGCAAAGACA
TTCAGAGCATGGAGAAAATCGCTGAAAATGGATTAAAATACCTCAAGCAT
TACGAAAAGTGGCTGCCGCCACAGCATTTTCACATGAGTGAGATTAAAAT
CCTGCTCGTTCAGCTGCTGGCCAAGGATCAGAAGGAGCTAATGGTGATCC
CGGATGACAGACTGCTGCTAAAGCTCAATTTCGCTAGGGAACTTGTTGAG
TTGTACGAGAAACTGACGCCGTGCGAAGTTCGCACGCTCGGCACGCTTTG
CTTCGAACTGCACTCGGCAATTGCCGAACAGACTCGTCGTGTAGCCCTTG
AAACGAGCCTGTCGCCCAAGGATCGACTGGAGGAGTCCCTGTTTTATGTG
GACAAGTGCGTCAACTATCTGAAATACGAGTCGGACATCTTCATCGAGGG
TCACGTGCTTAAGCAGGCCAAGATCAACCGCGATGCCCTTCGCATGGTCA
TGTCCGCAAGCTTTCTAGACCAT

BO07482.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8503-RA 1542 CG8503-PA 1..1539 17..1555 7695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8503-RA 1774 CG8503-RA 160..1699 16..1555 7700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14244126..14244581 147..602 2280 100 Plus
2R 25286936 2R 14244842..14245270 601..1029 2145 100 Plus
2R 25286936 2R 14245759..14245991 1323..1555 1165 100 Plus
2R 25286936 2R 14245500..14245685 1138..1323 930 100 Plus
2R 25286936 2R 14243937..14244069 16..148 665 100 Plus
2R 25286936 2R 14245335..14245443 1029..1137 545 100 Plus
Blast to na_te.dros performed 2014-11-28 00:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 1482..1586 878..981 117 58.1 Plus

BO07482.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:26 Download gff for BO07482.complete
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 1..1542 17..1556 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:20 Download gff for BO07482.complete
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 251..1795 16..1561 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:52 Download gff for BO07482.complete
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 161..1699 17..1557 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:26 Download gff for BO07482.complete
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 251..1795 16..1561 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:32 Download gff for BO07482.complete
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 161..1699 17..1557 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:32 Download gff for BO07482.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14243938..14244069 17..148 100 -> Plus
2R 14244128..14244579 149..600 100 -> Plus
2R 14244842..14245270 601..1029 100 -> Plus
2R 14245336..14245443 1030..1137 100 -> Plus
2R 14245500..14245684 1138..1322 100 -> Plus
2R 14245759..14245991 1323..1557 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:52 Download gff for BO07482.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10133005..10133189 1138..1322 100 -> Plus
arm_2R 10131443..10131574 17..148 100 -> Plus
arm_2R 10131633..10132084 149..600 100 -> Plus
arm_2R 10132347..10132775 601..1029 100 -> Plus
arm_2R 10132841..10132948 1030..1137 100 -> Plus
arm_2R 10133264..10133496 1323..1557 99   Plus

BO07482.pep Sequence

Translation from 16 to 1573

> BO07482.pep
MNPCHVCEEPTKNKCSNCNQVSYCSVQHQKQDWKVHKPSCHPFKIAHNEQ
LGRHLVATRTIKPYEIVLKEAPLVRGPAQISAPVCLGCLNGIEAEDHIEC
EQCGWPLCGPECKSLDEHKAECGLTKDRGQKVNVQEFGGPHPLYTCLSTV
RCLLIGETSTEKASKFQDLESLESTRRGSNQWKADLVSIGQFIPKFFKTQ
KFTEEEIMKAVGALQINGHEVPTTDPSHVAVFYTASFTENSCLPNLAKSF
NKNGHCILWAPREIKKNAHLSICYSDAMWGTADRQRHLMQTKLFKCACER
CVDVTELDTNYSAIKCEDRQCGGLMLPTKADEWNGSWRCRECHKQVQKHY
VERILERAGKDIQSMEKIAENGLKYLKHYEKWLPPQHFHMSEIKILLVQL
LAKDQKELMVIPDDRLLLKLNFARELVELYEKLTPCEVRTLGTLCFELHS
AIAEQTRRVALETSLSPKDRLEESLFYVDKCVNYLKYESDIFIEGHVLKQ
AKINRDALRMVMSASFLDH

BO07482.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8503-PA 513 CG8503-PA 1..513 1..513 2776 100 Plus
CG18136-PA 530 CG18136-PA 6..524 1..505 513 28.1 Plus
CG14590-PA 553 CG14590-PA 7..514 4..480 500 29.4 Plus
CG43129-PC 503 CG43129-PC 5..485 44..502 478 29.3 Plus
CG43129-PE 507 CG43129-PE 21..489 52..502 463 29 Plus