Clone Sequence Records
BO07482.3prime Sequence
887 bp (841 high quality bases) assembled on 2006-01-06
> BO07482.3prime
ATGGTCTAGAAAGCTTGCGGACATGACCATGCGAAGGGCATCGCGGTTGA
TCTTGGCCTGCTTAAGCACGTGACCCTCGATGAAGATGTCCGACTCGTAT
TTCAGATAGTTGACGCACTTGTCCACATAAAACAGGGACTCCTCCAGTCG
ATCCTTGGGCGACAGGCTCGTTTCAAGGGCTACACGACGAGTCTGTTCGG
CAATTGCCGAGTGCAGTTCGAAGCAAAGCGTGCCGAGCGTGCGAACTTCG
CACGGCGTCAGTTTCTCGTACAACTCAACAAGTTCCCTAGCGAAATTGAG
CTTTAGCAGCAGTCTGTCATCCGGGATCACCATTAGCTCCTTCTGATCCT
TGGCCAGCAGCTGAACGAGCAGGATTTTAATCTCACTCATGTGAAAATGC
TGTGGCGGCAGCCACTTTTCGTAATGCTTGAGGTATTTTAATCCATTTTC
AGCGATTTTCTCCATGCTCTGAATGTCTTTGCCAGCCCGTTCCAAAATGC
GTTCCACATAGTGTTTCTGGACCTGCTTGTGGCACTCGCGACAGCGCCAA
CTGCCGTTCCATTCGTCCGCCTTGGTGGGCAGCATCAATCCGCCGCACTG
GCGATCCTCGCACTTAATAGCGCTGTAGTTGGTGTCCAACTCGGTGACAT
CCACACATCTCTCGCAGGCACACTTGAACAGCTTTGTCTGCATCAGGTGG
CGCTGGCGATCGGCGGTGCCCCACATGGCGTCCGAGTAGCAGATGCTCAG
GTGGGCGTTCTTCTTGATCTCGCGCGGTGCCCAGAGGATGCAGTGTCCGT
TCTTGTTGAAGCTCTTGGCCAGATTGGGCAGGCAGGAGTTCTCCCGTAAG
GAGGCGGTATAAAAGACCGCTACATGAGATGGATCAG
BO07482.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8503-PA | 1542 | CG8503-RA | 714..1539 | 844..19 | 4130 | 100 | Minus |
CG8503-PA | 1542 | CG8503-RA | 671..710 | 887..848 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:30:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8503-RA | 1774 | CG8503-RA | 831..1699 | 887..19 | 4300 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:30:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14244928..14245270 | 887..545 | 1670 | 99.1 | Minus |
2R | 25286936 | 2R | 14245759..14245991 | 251..19 | 1165 | 100 | Minus |
2R | 25286936 | 2R | 14245500..14245685 | 436..251 | 930 | 100 | Minus |
2R | 25286936 | 2R | 14245335..14245443 | 545..437 | 545 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 05:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 1482..1586 | 696..593 | 117 | 58.1 | Minus |
BO07482.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:01 Download gff for
BO07482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-PA | 671..1542 | 18..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:48 Download gff for
BO07482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-PA | 671..1542 | 18..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:03:44 Download gff for
BO07482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 831..1704 | 13..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:59 Download gff for
BO07482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 831..1704 | 13..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:59 Download gff for
BO07482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14244928..14245270 | 545..887 | 99 | -> | Minus |
2R | 14245336..14245443 | 437..544 | 100 | -> | Minus |
2R | 14245500..14245684 | 252..436 | 100 | -> | Minus |
2R | 14245759..14245996 | 13..251 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:03:44 Download gff for
BO07482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10132433..10132775 | 545..887 | 99 | -> | Minus |
arm_2R | 10132841..10132948 | 437..544 | 100 | -> | Minus |
arm_2R | 10133005..10133189 | 252..436 | 100 | -> | Minus |
arm_2R | 10133264..10133501 | 13..251 | 98 | | Minus |
BO07482.5prime Sequence
937 bp (860 high quality bases) assembled on 2006-01-06
> BO07482.5prime
GAAGTTATCAGTCGACATGAATCCCTGCCATGTGTGCGAGGAGCCGACGA
AGAACAAGTGCTCCAACTGTAACCAGGTCTCCTACTGCAGTGTCCAGCAC
CAGAAGCAGGACTGGAAAGTGCACAAGCCAAGCTGTCATCCATTCAAGAT
CGCCCACAATGAGCAGCTGGGCCGGCATCTGGTGGCCACCCGCACCATTA
AACCATACGAGATAGTCCTGAAGGAGGCGCCTCTGGTCCGGGGACCAGCA
CAGATCTCCGCACCCGTTTGCCTGGGCTGTTTGAACGGCATCGAGGCGGA
GGATCACATCGAGTGCGAGCAGTGCGGTTGGCCGCTGTGCGGACCGGAGT
GCAAGTCCCTGGATGAGCACAAGGCGGAGTGCGGTCTGACCAAGGATCGG
GGTCAGAAGGTTAATGTGCAGGAGTTCGGTGGACCACATCCCCTGTACAC
GTGTTTGAGCACCGTAAGGTGCCTGCTGATTGGCGAAACAAGTACGGAGA
AGGCCAGCAAGTTCCAGGACCTGGAGTCACTGGAGTCCACCAGAAGGGGG
TCCAACCAATGGAAGGCGGATCTGGTCAGCATCGGGCAGTTTATTCCAAA
GTTCTTTAAAACACAGAAGTTCACCGAGGAGGAGATTATGAAAGCAGTTG
GTGCTCTGCAAATAAATGGACACGAGGTGCCCACCACTGATCCATCTCAT
GTAGCGGTCTTTTATACCGCCTCCTTTACGGAGAACTCCTGCCTGCCCAA
TCTGGCCAAGAGCTTCAACAAGAACGGACACTGCATCCTCTGGGCACCGC
GCGAGATCAAGAAGAACGCCCACCTGAGCATCTGCTACTCGGACGCCATG
TGGGGCACCGCCGATCGCCAGCGCCACCTGATGCAGACNAAGCTGTTCAA
GTGTGCCTGCGAGAGATGTGTGAATGTCACCGAGTTG
BO07482.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8503-PA | 1542 | CG8503-RA | 1..921 | 17..937 | 4561 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8503-RA | 1774 | CG8503-RA | 160..1081 | 16..937 | 4584 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14244126..14244581 | 147..602 | 2280 | 100 | Plus |
2R | 25286936 | 2R | 14244842..14245178 | 601..937 | 1659 | 99.4 | Plus |
2R | 25286936 | 2R | 14243937..14244069 | 16..148 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:24:27 has no hits.
BO07482.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:03 Download gff for
BO07482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-PA | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:50 Download gff for
BO07482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-PA | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:47 Download gff for
BO07482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 160..1081 | 16..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:53:56 Download gff for
BO07482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 160..1081 | 16..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:53:56 Download gff for
BO07482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14243937..14244069 | 16..148 | 100 | -> | Plus |
2R | 14244128..14244579 | 149..600 | 100 | -> | Plus |
2R | 14244842..14245178 | 601..937 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:47 Download gff for
BO07482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10131442..10131574 | 16..148 | 100 | -> | Plus |
arm_2R | 10131633..10132084 | 149..600 | 100 | -> | Plus |
arm_2R | 10132347..10132683 | 601..937 | 99 | | Plus |
BO07482.complete Sequence
1573 bp (1573 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630805
> BO07482.complete
GAAGTTATCAGTCGACATGAATCCCTGCCATGTGTGCGAGGAGCCGACGA
AGAACAAGTGCTCCAACTGTAACCAGGTCTCCTACTGCAGTGTCCAGCAC
CAGAAGCAGGACTGGAAAGTGCACAAGCCAAGCTGTCATCCATTCAAGAT
CGCCCACAATGAGCAGCTGGGCCGGCATCTGGTGGCCACCCGCACCATTA
AACCATACGAGATAGTCCTGAAGGAGGCGCCTCTGGTCCGGGGACCAGCA
CAGATCTCCGCACCCGTTTGCCTGGGCTGTTTGAACGGCATCGAGGCGGA
GGATCACATCGAGTGCGAGCAGTGCGGTTGGCCGCTGTGCGGACCGGAGT
GCAAGTCCCTGGATGAGCACAAGGCGGAGTGCGGTCTGACCAAGGATCGG
GGTCAGAAGGTTAATGTGCAGGAGTTCGGTGGACCACATCCCCTGTACAC
GTGTTTGAGCACCGTAAGGTGCCTGCTGATTGGCGAAACAAGTACGGAGA
AGGCCAGCAAGTTCCAGGACCTGGAGTCACTGGAGTCCACCAGAAGGGGG
TCCAACCAATGGAAGGCGGATCTGGTCAGCATCGGGCAGTTTATTCCAAA
GTTCTTTAAAACACAGAAGTTCACCGAGGAGGAGATTATGAAAGCAGTTG
GTGCTCTGCAAATAAATGGACACGAGGTGCCCACCACTGATCCATCTCAT
GTAGCGGTCTTTTATACCGCCTCCTTTACGGAGAACTCCTGCCTGCCCAA
TCTGGCCAAGAGCTTCAACAAGAACGGACACTGCATCCTCTGGGCACCGC
GCGAGATCAAGAAGAACGCCCACCTGAGCATCTGCTACTCGGACGCCATG
TGGGGCACCGCCGATCGCCAGCGCCACCTGATGCAGACAAAGCTGTTCAA
GTGTGCCTGCGAGAGATGTGTGGATGTCACCGAGTTGGACACCAACTACA
GCGCTATTAAGTGCGAGGATCGCCAGTGCGGCGGATTGATGCTGCCCACC
AAGGCGGACGAATGGAACGGCAGTTGGCGCTGTCGCGAGTGCCACAAGCA
GGTCCAGAAACACTATGTGGAACGCATTTTGGAACGGGCTGGCAAAGACA
TTCAGAGCATGGAGAAAATCGCTGAAAATGGATTAAAATACCTCAAGCAT
TACGAAAAGTGGCTGCCGCCACAGCATTTTCACATGAGTGAGATTAAAAT
CCTGCTCGTTCAGCTGCTGGCCAAGGATCAGAAGGAGCTAATGGTGATCC
CGGATGACAGACTGCTGCTAAAGCTCAATTTCGCTAGGGAACTTGTTGAG
TTGTACGAGAAACTGACGCCGTGCGAAGTTCGCACGCTCGGCACGCTTTG
CTTCGAACTGCACTCGGCAATTGCCGAACAGACTCGTCGTGTAGCCCTTG
AAACGAGCCTGTCGCCCAAGGATCGACTGGAGGAGTCCCTGTTTTATGTG
GACAAGTGCGTCAACTATCTGAAATACGAGTCGGACATCTTCATCGAGGG
TCACGTGCTTAAGCAGGCCAAGATCAACCGCGATGCCCTTCGCATGGTCA
TGTCCGCAAGCTTTCTAGACCAT
BO07482.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8503-RA | 1542 | CG8503-PA | 1..1539 | 17..1555 | 7695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8503-RA | 1774 | CG8503-RA | 160..1699 | 16..1555 | 7700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14244126..14244581 | 147..602 | 2280 | 100 | Plus |
2R | 25286936 | 2R | 14244842..14245270 | 601..1029 | 2145 | 100 | Plus |
2R | 25286936 | 2R | 14245759..14245991 | 1323..1555 | 1165 | 100 | Plus |
2R | 25286936 | 2R | 14245500..14245685 | 1138..1323 | 930 | 100 | Plus |
2R | 25286936 | 2R | 14243937..14244069 | 16..148 | 665 | 100 | Plus |
2R | 25286936 | 2R | 14245335..14245443 | 1029..1137 | 545 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 1482..1586 | 878..981 | 117 | 58.1 | Plus |
BO07482.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:26 Download gff for
BO07482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 1..1542 | 17..1556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:20 Download gff for
BO07482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 251..1795 | 16..1561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:52 Download gff for
BO07482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 161..1699 | 17..1557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:26 Download gff for
BO07482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 251..1795 | 16..1561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:32 Download gff for
BO07482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 161..1699 | 17..1557 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:32 Download gff for
BO07482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14243938..14244069 | 17..148 | 100 | -> | Plus |
2R | 14244128..14244579 | 149..600 | 100 | -> | Plus |
2R | 14244842..14245270 | 601..1029 | 100 | -> | Plus |
2R | 14245336..14245443 | 1030..1137 | 100 | -> | Plus |
2R | 14245500..14245684 | 1138..1322 | 100 | -> | Plus |
2R | 14245759..14245991 | 1323..1557 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:52 Download gff for
BO07482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10133005..10133189 | 1138..1322 | 100 | -> | Plus |
arm_2R | 10131443..10131574 | 17..148 | 100 | -> | Plus |
arm_2R | 10131633..10132084 | 149..600 | 100 | -> | Plus |
arm_2R | 10132347..10132775 | 601..1029 | 100 | -> | Plus |
arm_2R | 10132841..10132948 | 1030..1137 | 100 | -> | Plus |
arm_2R | 10133264..10133496 | 1323..1557 | 99 | | Plus |
BO07482.pep Sequence
Translation from 16 to 1573
> BO07482.pep
MNPCHVCEEPTKNKCSNCNQVSYCSVQHQKQDWKVHKPSCHPFKIAHNEQ
LGRHLVATRTIKPYEIVLKEAPLVRGPAQISAPVCLGCLNGIEAEDHIEC
EQCGWPLCGPECKSLDEHKAECGLTKDRGQKVNVQEFGGPHPLYTCLSTV
RCLLIGETSTEKASKFQDLESLESTRRGSNQWKADLVSIGQFIPKFFKTQ
KFTEEEIMKAVGALQINGHEVPTTDPSHVAVFYTASFTENSCLPNLAKSF
NKNGHCILWAPREIKKNAHLSICYSDAMWGTADRQRHLMQTKLFKCACER
CVDVTELDTNYSAIKCEDRQCGGLMLPTKADEWNGSWRCRECHKQVQKHY
VERILERAGKDIQSMEKIAENGLKYLKHYEKWLPPQHFHMSEIKILLVQL
LAKDQKELMVIPDDRLLLKLNFARELVELYEKLTPCEVRTLGTLCFELHS
AIAEQTRRVALETSLSPKDRLEESLFYVDKCVNYLKYESDIFIEGHVLKQ
AKINRDALRMVMSASFLDH
BO07482.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8503-PA | 513 | CG8503-PA | 1..513 | 1..513 | 2776 | 100 | Plus |
CG18136-PA | 530 | CG18136-PA | 6..524 | 1..505 | 513 | 28.1 | Plus |
CG14590-PA | 553 | CG14590-PA | 7..514 | 4..480 | 500 | 29.4 | Plus |
CG43129-PC | 503 | CG43129-PC | 5..485 | 44..502 | 478 | 29.3 | Plus |
CG43129-PE | 507 | CG43129-PE | 21..489 | 52..502 | 463 | 29 | Plus |