Clone Sequence Records
BO07484.3prime Sequence
846 bp (844 high quality bases) assembled on 2006-01-06
> BO07484.3prime
ATGGTCTAGAAAGCTTGCATCCTCGACAGCACACATGACGGAGTAGACGC
ACTCTTCCTTGTTAATCAAGTGGCAGGTCTTGTTGACCAGGGACATCAGC
TGGTTGACGTCGGTGGCCCAGTTGTTCAGGATGTCGGAGGCGCTCTTTTT
TTGGGTGAAGTAAATGATGCCGGCGGGACGGTCGATCTTTACGCGGATGG
TGTCGGTGTTGGCCAGTTTAGAAAGATACTCCTCGCAGCGGCTGGTGGGC
AGGTTCAGCAGCTCACTCATGCGCGCCAAATGCAGGCGGGAGTAATACAT
GGCAATGATGCGAATGTTATGCTCTATCAGACGATCCTTAAGCTCGGTGA
TACATTTCTTGCCATGCTTGGTGCTATCCTTGAACATCTCGTTTTCAGCC
AACACGAGCCCAAAGTCTGCATTAAATGTGTCGAAGTTGATCAGCTCCTT
TGACATGAACAAGCGCAGAATTTCCTTATAGGCGGGCACTTCCTCCAGCT
TCTTGTTCTTCGAAAGATGTGCCATCATGTCGCTCTGTTCGTTGTCGAAG
GGAGCTAAAACGCAATAAAGCACGGCACAAACCAGCTTTTCCGTCAGTTC
CTTCTTCTGCTCCTCGGTAAGTTCAATTTCGACCTCAGCCTCTGTAGCAA
CCTCTGGCTTCTTATCCTTGTCATCTTCCTCCTTCTTTTTCTTATCGTCA
TCCTTCTTTTTTTGCTCATCCGTGGACGCGGCAGAGTCTACGGGTGTAAG
GCCAGTCTTCTTGCGCGGAGGCTCCGCTATGGCCTGATAATGGCGCGAAG
TATTCAGGAAGGAGGTGTCTCTGTTCAACTGAATCATTAGATAGTA
BO07484.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1100-PA | 1509 | Rpn5-RA | 679..1506 | 846..19 | 4140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:02:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn5-RA | 1897 | CG1100-RA | 903..1730 | 846..19 | 4140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5790454..5790825 | 846..475 | 1860 | 100 | Minus |
| 3R | 32079331 | 3R | 5791103..5791402 | 318..19 | 1500 | 100 | Minus |
| 3R | 32079331 | 3R | 5790884..5791040 | 475..319 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:02:11 has no hits.
BO07484.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:06 Download gff for
BO07484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-PA | 680..1509 | 15..845 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:54 Download gff for
BO07484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1100-PA | 680..1509 | 15..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:50 Download gff for
BO07484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 904..1733 | 15..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:04 Download gff for
BO07484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 904..1733 | 15..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:04 Download gff for
BO07484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5790455..5790824 | 476..845 | 100 | -> | Minus |
| 3R | 5790884..5791040 | 319..475 | 100 | -> | Minus |
| 3R | 5791103..5791405 | 15..318 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:50 Download gff for
BO07484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1616177..1616546 | 476..845 | 100 | -> | Minus |
| arm_3R | 1616606..1616762 | 319..475 | 100 | -> | Minus |
| arm_3R | 1616825..1617127 | 15..318 | 99 | | Minus |
BO07484.5prime Sequence
886 bp (785 high quality bases) assembled on 2006-01-06
> BO07484.5prime
GAAGTTATCAGTCGACATGGACACCTATTTGTTTGATGGCGGCCGCATCA
CCAAGATGGAGGTGGACTACGAGCCGGCGTGCAACGAGAAAATCCCCCTG
GCTAAGGAGCTGGCCAAGAAAAACCCCGACGCCTTTCACGAAGCCATCGA
GATGATGCTACAACTGGAGAAGCAGACGCGCCTGGGCGCCGACATGGTTT
CTTGCTCACGAGTCCTGGTTGCCATCTGTCAGATCTGCTTTGACGCGTCC
AACTGGAACGCCCTCAACGAGTACGTGTCTCTGCTGGTACGCCGTCGCTC
CCAGCTGAAGCAGGCTGTGGTCAAGATGATCCAGGAGTGCGTCACGTACG
TGGACAAGACGCCCGACAAAGAGACTAAGCTGAAGCTTATCGACACACTT
CGCTCGGTTACCGAGGGCAAGATTTACGTTGAGATCGAGCGGGCCCGTCT
TACTAAGATTCTGGCGGACATTAAGGAAGCCGATGGCGATGTCGCCGGAG
CTGCCACTGTCATGGAGGAGCTTCAAGTGGAGACTTATGGCTCGATGGAT
AAGCGCGAGAAGGTGGAGCTCATCCTGGAGCAGATGCGCCTTTGTCTGTT
GAAGGAGGATTACGTATCCACGCAGATCATTGCCAAGAAGATCAGTATAA
AGTTCTTTGACGATCCGGCACAGCATGATCTGAAGCTGAAGTTCTACTAT
CTAATGATTCAGTTGAACAGAGACACCTCCTTCCTGAATACTTCGCGCCA
TTATCAGGCCATAGCGGAGCCTCCGCGCAAGAAGACTGGCCTTACACCCG
TAGACTCTGCCGCGTCCACGGATGAGCNNAAAAAGAAGGATGACGATNAG
AAAAAGAAGGAGGAAGATGACAAGGATAAGAAGCCA
BO07484.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1100-PA | 1509 | Rpn5-RA | 1..870 | 17..886 | 4293 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn5-RA | 1897 | CG1100-RA | 225..1094 | 17..886 | 4317 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5789776..5790645 | 17..886 | 4317 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:02:47 has no hits.
BO07484.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:07 Download gff for
BO07484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:55 Download gff for
BO07484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1100-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:52 Download gff for
BO07484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 221..1093 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:11 Download gff for
BO07484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 221..1093 | 9..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:11 Download gff for
BO07484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5789772..5790644 | 9..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:52 Download gff for
BO07484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1615494..1616366 | 9..885 | 99 | | Plus |
BO07484.complete Sequence
1540 bp (1540 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630807
> BO07484.complete
GAAGTTATCAGTCGACATGGACACCTATTTGTTTGATGGCGGCCGCATCA
CCAAGATGGAGGTGGACTACGAGCCGGCGTGCAACGAGAAAATCCCCCTG
GCTAAGGAGCTGGCCAAGAAAAACCCCGACGCCTTTCACGAAGCCATCGA
GATGATGCTACAACTGGAGAAGCAGACGCGCCTGGGCGCCGACATGGTTT
CTTGCTCACGAGTCCTGGTTGCCATCTGTCAGATCTGCTTTGACGCGTCC
AACTGGAACGCCCTCAACGAGTACGTGTCTCTGCTGGTACGCCGTCGCTC
CCAGCTGAAGCAGGCTGTGGTCAAGATGATCCAGGAGTGCGTCACGTACG
TGGACAAGACGCCCGACAAAGAGACTAAGCTGAAGCTTATCGACACACTT
CGCTCGGTTACCGAGGGCAAGATTTACGTTGAGATCGAGCGGGCCCGTCT
TACTAAGATTCTGGCGGACATTAAGGAAGCCGATGGCGATGTCGCCGGAG
CTGCCACTGTCATGGAGGAGCTTCAAGTGGAGACTTATGGCTCGATGGAT
AAGCGCGAGAAGGTGGAGCTCATCCTGGAGCAGATGCGCCTTTGTCTGTT
GAAGGAGGATTACGTATCCACGCAGATCATTGCCAAGAAGATCAGTATAA
AGTTCTTTGACGATCCGGCACAGCATGATCTGAAGCTGAAGTTCTACTAT
CTAATGATTCAGTTGAACAGAGACACCTCCTTCCTGAATACTTCGCGCCA
TTATCAGGCCATAGCGGAGCCTCCGCGCAAGAAGACTGGCCTTACACCCG
TAGACTCTGCCGCGTCCACGGATGAGCAAAAAAAGAAGGATGACGATAAG
AAAAAGAAGGAGGAAGATGACAAGGATAAGAAGCCAGAGGTTGCTACAGA
GGCTGAGGTCGAAATTGAACTTACCGAGGAGCAGAAGAAGGAACTGACGG
AAAAGCTGGTTTGTGCCGTGCTTTATTGCGTTTTAGCTCCCTTCGACAAC
GAACAGAGCGACATGATGGCACATCTTTCGAAGAACAAGAAGCTGGAGGA
AGTGCCCGCCTATAAGGAAATTCTGCGCTTGTTCATGTCAAAGGAGCTGA
TCAACTTCGACACATTTAATGCAGACTTTGGGCTCGTGTTGGCTGAAAAC
GAGATGTTCAAGGATAGCACCAAGCATGGCAAGAAATGTATCACCGAGCT
TAAGGATCGTCTGATAGAGCATAACATTCGCATCATTGCCATGTATTACT
CCCGCCTGCATTTGGCGCGCATGAGTGAGCTGCTGAACCTGCCCACCAGC
CGCTGCGAGGAGTATCTTTCTAAACTGGCCAACACCGACACCATCCGCGT
AAAGATCGACCGTCCCGCCGGCATCATTTACTTCACCCAAAAAAAGAGCG
CCTCCGACATCCTGAACAACTGGGCCACCGACGTCAACCAGCTGATGTCC
CTGGTCAACAAGACCTGCCACTTGATTAACAAGGAAGAGTGCGTCTACTC
CGTCATGTGTGCTGTCGAGGATGCAAGCTTTCTAGACCAT
BO07484.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn5-RA | 1509 | CG1100-PA | 1..1506 | 17..1522 | 7530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn5-RA | 1897 | CG1100-RA | 225..1730 | 17..1522 | 7530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5789776..5790825 | 17..1066 | 5250 | 100 | Plus |
| 3R | 32079331 | 3R | 5791103..5791402 | 1223..1522 | 1500 | 100 | Plus |
| 3R | 32079331 | 3R | 5790884..5791040 | 1066..1222 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:41:06 has no hits.
BO07484.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:18 Download gff for
BO07484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 1..1509 | 17..1526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:02 Download gff for
BO07484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 225..1737 | 9..1526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:05 Download gff for
BO07484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 225..1730 | 17..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:18 Download gff for
BO07484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 225..1737 | 9..1526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:01 Download gff for
BO07484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 225..1730 | 17..1524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:01 Download gff for
BO07484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5791103..5791402 | 1223..1524 | 99 | | Plus |
| 3R | 5789776..5790824 | 17..1065 | 100 | -> | Plus |
| 3R | 5790884..5791040 | 1066..1222 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:05 Download gff for
BO07484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1615498..1616546 | 17..1065 | 100 | -> | Plus |
| arm_3R | 1616606..1616762 | 1066..1222 | 100 | -> | Plus |
| arm_3R | 1616825..1617124 | 1223..1524 | 99 | | Plus |
BO07484.pep Sequence
Translation from 16 to 1540
> BO07484.pep
MDTYLFDGGRITKMEVDYEPACNEKIPLAKELAKKNPDAFHEAIEMMLQL
EKQTRLGADMVSCSRVLVAICQICFDASNWNALNEYVSLLVRRRSQLKQA
VVKMIQECVTYVDKTPDKETKLKLIDTLRSVTEGKIYVEIERARLTKILA
DIKEADGDVAGAATVMEELQVETYGSMDKREKVELILEQMRLCLLKEDYV
STQIIAKKISIKFFDDPAQHDLKLKFYYLMIQLNRDTSFLNTSRHYQAIA
EPPRKKTGLTPVDSAASTDEQKKKDDDKKKKEEDDKDKKPEVATEAEVEI
ELTEEQKKELTEKLVCAVLYCVLAPFDNEQSDMMAHLSKNKKLEEVPAYK
EILRLFMSKELINFDTFNADFGLVLAENEMFKDSTKHGKKCITELKDRLI
EHNIRIIAMYYSRLHLARMSELLNLPTSRCEEYLSKLANTDTIRVKIDRP
AGIIYFTQKKSASDILNNWATDVNQLMSLVNKTCHLINKEECVYSVMCAV
EDASFLDH
BO07484.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn5-PA | 502 | CG1100-PA | 1..502 | 1..502 | 2562 | 100 | Plus |
