Clone BO07485 Report

Search the DGRC for BO07485

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptIrc-RA
Protein status:BO07485.pep: validated full length
Sequenced Size:2125

Clone Sequence Records

BO07485.3prime Sequence

942 bp (754 high quality bases) assembled on 2006-01-06

> BO07485.3prime
ATGGTCTAGAAAGCTTGCGACGTCTTCACAAGAGACCATTTGATTTCTGG
CCGATGGCAACTGGAAGATATTCTGGGGAACAGCTGAAAGGCCGGAATTC
AGGCAAAGGAGTTTGGTTCCATTGAAGTGGCGATATTGCTCCACCAGTTC
AGTGTGTTTTTGGACAGCTTTTTGCTGGTTTTGTTTCAGAACATGTACGA
ATTGCTCAGAGATAATGCAACTGAAGGTGGGGCCAATGGATCCATGAACA
GGATTCTCCGAAATACCACCCACAATGAGGTCCACATCAGCCCAACTGGC
GTATATTGTTTTCAGCTTATCCAAGACATCACTGGGAATGAAATGCTCAA
AATCTTTCCAGCTTTCTACGGGTCTGGACAACACACACGATTCCAAGTAC
CGATAATATGGCAGCAGACCGTGATCTCTCCCCCTTTGGATATCGAAGGC
CAAAATATCGGCATGGGTTGGCTTGGTGTCCTTGTGCCAGACGACACCAC
CGGAGTAGGCAGCGTCCATCTTCATGGTCTCCTGATTGAGCAAACTCTCA
AGGATGTTATTCAACTTTTGGGAAGTGTACTGCAACTTTGGTTTGTAGAT
TTCTTCCTTGAGCTCAAAAAGGTTTTTAGTTGGTAGCTCCTTGCTAATAA
ACACATATTGGTTGTTTTTCTCAGTACCGTAGACTACGTTATCCTTGGTC
AGATTTAGGAGCTCATTGGGCAGCATAGAGAAGTAAAATCGAATGGCAGC
CACCGCAAACTCATTGGAGACCTCCAAAGCACGATTAGGCTGTTTTCTCC
TAATCTCACTGGACATCTTCTGGCCGAGCACCTCTGGCAGCCACTCCTCA
ATGACCACTCGACGATATATATCCACATTGACTGCCTTGGCAGCTTGGAA
GAGCTTTTCATCGCTCCACCGGGGATTCCTTTGCTTCAGCTC

BO07485.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8913-PA 2094 CG8913-RA 1168..2091 942..19 4620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Irc-RB 2390 CG8913-RB 1369..2292 942..19 4620 100 Minus
Irc-RA 2341 CG8913-RA 1369..2292 942..19 4620 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17005715..17005989 942..668 1375 100 Minus
3R 32079331 3R 17006105..17006278 667..494 870 100 Minus
3R 32079331 3R 17006334..17006503 495..326 850 100 Minus
3R 32079331 3R 17006750..17006912 209..47 815 100 Minus
3R 32079331 3R 17006576..17006693 327..210 590 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:43:48 has no hits.

BO07485.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:08 Download gff for BO07485.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8913-PA 1168..2094 18..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:56 Download gff for BO07485.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8913-PA 1168..2094 18..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:56:05 Download gff for BO07485.3prime
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 1369..2300 11..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:47:12 Download gff for BO07485.3prime
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 1369..2300 11..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:47:12 Download gff for BO07485.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17006750..17006912 47..209 100 -> Minus
3R 17005715..17005989 668..942 100 -> Minus
3R 17006105..17006276 496..667 100 -> Minus
3R 17006334..17006501 328..495 100 -> Minus
3R 17006576..17006693 210..327 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:56:05 Download gff for BO07485.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12831437..12831711 668..942 100 -> Minus
arm_3R 12831827..12831998 496..667 100 -> Minus
arm_3R 12832056..12832223 328..495 100 -> Minus
arm_3R 12832298..12832415 210..327 100 -> Minus
arm_3R 12832472..12832634 47..209 100 -> Minus

BO07485.5prime Sequence

906 bp (805 high quality bases) assembled on 2006-01-06

> BO07485.5prime
GAAGTTATCAGTCGACATGGGTGGAATTCAGTACATCTGCCTGCTGGCTT
TCATAATAGGAGCATCATTATTGACAACAATCGATGCTAATTCGAGCCGA
GATGTTAATGCCGAATTAAACAGGATTCCTGCTTCGAAATGGTTGCAATA
TGTAGAAACGGCGTTGGACTCAGTAAATAGGCAAAAGCGACTGGAGGACA
ATCTATTAGGTTCCGATATCACTGTTAAGAACGGCAGCCTTTCACACGCT
CAACTTCTGGATACTTTACCAAGCCTAGCTTCGAAGAAGGACAATAAGCT
CGCCCTGAAGATCCTTAAGTCCAGCTTGCTCGTTTTCAACAGCGAATGCC
TGCCTAATAATATCGATGGAGACAAGTGCCGCAGTTACCTGGAGCAAAAA
CCACTTCCGGAGGGCAGTAGCTTGCGAACTGAGTGTGAGAACTCACTCAA
GGGAAATCGAGAGGGTCACTATGCTTTCAGAAGGCTACTTGGGAGCAGCC
ACTACAGGAACGGTTTCTATCAGATGTTTCCCAATTCCGGAAGACGCGAA
ACAGTGCCGGCTGCGTGGTCCATTAGTAAGGAGCTGTATGAGCCCGATCA
CATTCAGATCTCCAAACAACAAACCTTCGAAAGCAATTCCAATTTGGCCC
TCCCTCAGTGGGCTCAATTTGTGGAGCATGATCTTAGCAAGCCGGTGTCG
CAATCAATGAGCAATGGAGCCCCAATAGAGTGCTGCAGCCGTGACCAGAT
CAACCTTCAGCCGCGTCACCACCACCCGGCATGTGCTCCGATTCTGTACC
AGCCCGGTGGGAAATACGACGTGCCCAGCTGCCTTAACTATGTGCGAAGT
GCTCTGGCCGTGGCTGATTTGCATTTCGGTGGCGCCCAAACAACTCACCA
GGCCAC

BO07485.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8913-PA 2094 CG8913-RA 1..853 17..869 4265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
Irc-RB 2390 CG8913-RB 202..1091 17..906 4345 99.4 Plus
Irc-RA 2341 CG8913-RA 202..1091 17..906 4345 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17004467..17004801 189..523 1675 100 Plus
3R 32079331 3R 17004864..17005053 522..711 950 100 Plus
3R 32079331 3R 17005170..17005345 711..886 835 98.3 Plus
3R 32079331 3R 17004204..17004300 93..189 485 100 Plus
3R 32079331 3R 17003076..17003151 17..92 380 100 Plus
Blast to na_te.dros performed on 2015-02-09 19:35:41 has no hits.

BO07485.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:09 Download gff for BO07485.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8913-PA 1..890 17..906 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:57 Download gff for BO07485.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8913-PA 1..890 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:09:19 Download gff for BO07485.5prime
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 202..1091 17..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:26 Download gff for BO07485.5prime
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 202..1091 17..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:26 Download gff for BO07485.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17004204..17004300 93..189 100 -> Plus
3R 17003076..17003151 17..92 100 -> Plus
3R 17004468..17004801 190..523 100 -> Plus
3R 17004866..17005052 524..710 100 -> Plus
3R 17005170..17005351 711..893 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:09:19 Download gff for BO07485.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12829926..12830022 93..189 100 -> Plus
arm_3R 12828798..12828873 17..92 100 -> Plus
arm_3R 12830190..12830523 190..523 100 -> Plus
arm_3R 12830588..12830774 524..710 100 -> Plus
arm_3R 12830892..12831073 711..893 97   Plus

BO07485.complete Sequence

2125 bp (2125 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ638650

> BO07485.complete
GAAGTTATCAGTCGACATGGGTGGAATTCAGTACATCTGCCTGCTGGCTT
TCATAATAGGAGCATCATTATTGACAACAATCGATGCTAATTCGAGCCGA
GATGTTAATGCCGAATTAAACAGGATTCCTGCTTCGAAATGGTTGCAATA
TGTAGAAACGGCGTTGGACTCAGTAAATAGGCAAAAGCGACTGGAGGACA
ATCTATTAGGTTCCGATATCACTGTTAAGAACGGCAGCCTTTCACACGCT
CAACTTCTGGATACTTTACCAAGCCTAGCTTCGAAGAAGGACAATAAGCT
CGCCCTGAAGATCCTTAAGTCCAGCTTGCTCGTTTTCAACAGCGAATGCC
TGCCTAATAATATCGATGGAGACAAGTGCCGCAGTTACCTGGAGCAAAAA
CCACTTCCGGAGGGCAGTAGCTTGCGAACTGAGTGTGAGAACTCACTCAA
GGGAAATCGAGAGGGTCACTATGCTTTCAGAAGGCTACTTGGGAGCAGCC
ACTACAGGAACGGTTTCTATCAGATGTTTCCCAATTCCGGAAGACGCGAA
ACAGTGCCGGCTGCGTGGTCCATTAGTAAGGAGCTGTATGAGCCCGATCA
CATTCAGATCTCCAAACAACAAACCTTCGAAAGCAATTCCAATTTGGCCC
TCCCTCAGTGGGCTCAATTTGTGGAGCATGATCTTAGCAAGCCGGTGTCG
CAATCAATGAGCAATGGAGCCCCAATAGAGTGCTGCAGCCGTGACCAGAT
CAACCTTCAGCCGCGTCACCACCACCCGGCATGTGCTCCGATTCTGTACC
AGCCCGGTGGGAAATACGACGTGCCCAGCTGCCTTAACTATGTGCGAAGT
GCTCTGGCCGTGGCTGATTGCAATTTCGGTGGCGCCGAACAACTCAACCA
GGCCACGGGGTCCTTGGATCTATCGCAACTCTATGGTTTCACCGCAGCGG
CGGAGAGAAAGTTGCGTGTTCTCGAGGGCGGTTTGTTAAGGTCAACTCCT
CGTGGAGAATTCGACAACGCCCTCCTGCCCATCGCCACCGATACGGAAGG
ACCATCGTTCTGCGCCAGGGCAACAATTGGTGATGGCACCTGCTTTGCTG
CCGGAGATTCGCGGGTGAATAGCAGTCCGTTCTCCATACTGATCTACACG
ATCTTCATGCGCAATCACAACAAAGTGGCTGCCGAGCTGAAGCAAAGGAA
TCCCCGGTGGAGCGATGAAAAGCTCTTCCAAGCTGCCAAGGCAGTCAATG
TGGATATATATCGTCGAGTGGTCATTGAGGAGTGGCTGCCAGAGGTGCTC
GGCCAGAAGATGTCCAGTGAGATTAGGAGAAAACAGCCTAATCGTGCTTT
GGAGGTCTCCAATGAGTTTGCGGTGGCTGCCATTCGATTTTACTTCTCTA
TGCTGCCCAATGAGCTCCTAAATCTGACCAAGGATAACGTAGTCTACGGT
ACTGAGAAAAACAACCAATATGTGTTTATTAGCAAGGAGCTACCAACTAA
AAACCTTTTTGAGCTCAAGGAAGAAATCTACAAACCAAAGTTGCAGTACA
CTTCCCAAAAGTTGAATAACATCCTTGAGAGTTTGCTCAATCAGGAGACC
ATGAAGATGGACGCTGCCTACTCCGGTGGTGTCGTCTGGCACAAGGACAC
CAAGCCAACCCATGCCGATATTTTGGCCTTCGATATCCAAAGGGGGAGAG
ATCACGGTCTGCTGCCATATTATCGGTACTTGGAATCGTGTGTGTTGTCC
AGACCCGTAGAAAGCTGGAAAGATTTTGAGCATTTCATTCCCAGTGATGT
CTTGGATAAGCTGAAAACAATATACGCCAGTTGGGCTGATGTGGACCTCA
TTGTGGGTGGTATTTCGGAGAATCCTGTTCATGGATCCATTGGCCCCACC
TTCAGTTGCATTATCTCTGAGCAATTCGTACATGTTCTGAAACAAAACCA
GCAAAAAGCTGTCCAAAAACACACTGAACTGGTGGAGCAATATCGCCACT
TCAATGGAACCAAACTCCTTTGCCTGAATTCCGGCCTTTCAGCTGTTCCC
CAGAATATCTTCCAGTTGCCATCGGCCAGAAATCAAATGGTCTCTTGTGA
AGACGTCGCAAGCTTTCTAGACCAT

BO07485.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
Irc-RB 2094 CG8913-PB 1..2091 17..2107 10455 100 Plus
Irc-RA 2094 CG8913-PA 1..2091 17..2107 10455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
Irc-RB 2390 CG8913-RB 202..2292 17..2107 10455 100 Plus
Irc-RA 2341 CG8913-RA 202..2292 17..2107 10455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17005424..17005989 893..1458 2830 100 Plus
3R 32079331 3R 17004467..17004801 189..523 1675 100 Plus
3R 32079331 3R 17004864..17005053 522..711 950 100 Plus
3R 32079331 3R 17005170..17005351 711..892 910 100 Plus
3R 32079331 3R 17006105..17006278 1459..1632 870 100 Plus
3R 32079331 3R 17006334..17006503 1631..1800 850 100 Plus
3R 32079331 3R 17006750..17006912 1917..2079 815 100 Plus
3R 32079331 3R 17006576..17006693 1799..1916 590 100 Plus
3R 32079331 3R 17004204..17004300 93..189 485 100 Plus
3R 32079331 3R 17003076..17003151 17..92 380 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:42:28 has no hits.

BO07485.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:37 Download gff for BO07485.complete
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 1..2094 17..2108 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:28 Download gff for BO07485.complete
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 200..2298 17..2115 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:35 Download gff for BO07485.complete
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 202..2292 17..2109 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:37 Download gff for BO07485.complete
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 200..2298 17..2115 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:44 Download gff for BO07485.complete
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 202..2292 17..2109 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:44 Download gff for BO07485.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17006750..17006912 1917..2079 100 -> Plus
3R 17007083..17007110 2080..2109 93   Plus
3R 17003076..17003151 17..92 100 -> Plus
3R 17004204..17004300 93..189 100 -> Plus
3R 17004468..17004801 190..523 100 -> Plus
3R 17004866..17005052 524..710 100 -> Plus
3R 17005170..17005351 711..892 100 -> Plus
3R 17005424..17005989 893..1458 100 -> Plus
3R 17006105..17006276 1459..1630 100 -> Plus
3R 17006334..17006501 1631..1798 100 -> Plus
3R 17006576..17006693 1799..1916 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:35 Download gff for BO07485.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12828798..12828873 17..92 100 -> Plus
arm_3R 12829926..12830022 93..189 100 -> Plus
arm_3R 12830190..12830523 190..523 100 -> Plus
arm_3R 12830588..12830774 524..710 100 -> Plus
arm_3R 12830892..12831073 711..892 100 -> Plus
arm_3R 12831146..12831711 893..1458 100 -> Plus
arm_3R 12831827..12831998 1459..1630 100 -> Plus
arm_3R 12832056..12832223 1631..1798 100 -> Plus
arm_3R 12832298..12832415 1799..1916 100 -> Plus
arm_3R 12832472..12832634 1917..2079 100 -> Plus
arm_3R 12832805..12832832 2080..2109 93   Plus

BO07485.pep Sequence

Translation from 16 to 2125

> BO07485.pep
MGGIQYICLLAFIIGASLLTTIDANSSRDVNAELNRIPASKWLQYVETAL
DSVNRQKRLEDNLLGSDITVKNGSLSHAQLLDTLPSLASKKDNKLALKIL
KSSLLVFNSECLPNNIDGDKCRSYLEQKPLPEGSSLRTECENSLKGNREG
HYAFRRLLGSSHYRNGFYQMFPNSGRRETVPAAWSISKELYEPDHIQISK
QQTFESNSNLALPQWAQFVEHDLSKPVSQSMSNGAPIECCSRDQINLQPR
HHHPACAPILYQPGGKYDVPSCLNYVRSALAVADCNFGGAEQLNQATGSL
DLSQLYGFTAAAERKLRVLEGGLLRSTPRGEFDNALLPIATDTEGPSFCA
RATIGDGTCFAAGDSRVNSSPFSILIYTIFMRNHNKVAAELKQRNPRWSD
EKLFQAAKAVNVDIYRRVVIEEWLPEVLGQKMSSEIRRKQPNRALEVSNE
FAVAAIRFYFSMLPNELLNLTKDNVVYGTEKNNQYVFISKELPTKNLFEL
KEEIYKPKLQYTSQKLNNILESLLNQETMKMDAAYSGGVVWHKDTKPTHA
DILAFDIQRGRDHGLLPYYRYLESCVLSRPVESWKDFEHFIPSDVLDKLK
TIYASWADVDLIVGGISENPVHGSIGPTFSCIISEQFVHVLKQNQQKAVQ
KHTELVEQYRHFNGTKLLCLNSGLSAVPQNIFQLPSARNQMVSCEDVASF
LDH

BO07485.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
Irc-PB 697 CG8913-PB 1..697 1..697 3637 100 Plus
Irc-PA 697 CG8913-PA 1..697 1..697 3637 100 Plus
cd-PA 830 CG6969-PA 96..781 31..700 516 26.7 Plus
CG4009-PC 649 CG4009-PC 26..629 85..694 485 28.2 Plus
CG4009-PB 649 CG4009-PB 26..629 85..694 485 28.2 Plus