Clone BO07486 Report

Search the DGRC for BO07486

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG30118-RA
Protein status:BO07486.pep: validated full length
Sequenced Size:1459

Clone Sequence Records

BO07486.3prime Sequence

971 bp (897 high quality bases) assembled on 2006-01-06

> BO07486.3prime
ATGGTCTAGAAAGCTTGCATCGCTGTTCTCGTCATATGGATGATACTGCT
TTGCCGGCACTGGCGACTGCTCCTCCTGCTTACCGTGCGTCGCCGATCGG
CAAAACTTCTTCGTGGTGCTCCAGTCCTCCTTGAGGGATAGATTAAACAT
GGAGTAGTCCGGATCGCCGGTCACCTCCTTTACAATGTTCAGGAACTTGG
GCATGCAGTTCTTCAGGGCATCGCCGGTGAGTGACGAATACGTCTCCAAA
AGCACCAATCCCTTGCAGCGTGGGTGGCCTGGCTCCTTATAAATATCAAG
CTGAAAATATTGGTTGTTGATAAGGAAGCAGCGGCGCTTCTTGTAGATGG
TGAAGTGAGCATCGTCGCGCTGGGCCAGCAAGTTCATGTAGTCACGATGC
GTCAGCTGGGTCTTCACCTCAATGCGGGCCTGCCCGTGAACGTTTGGACG
CCGCTGCGTGTGGATGTAGCTCCAGTGGTTCTTCTGTCCACGCTTGCGAA
GGCGAGCCTGCACCTTGGGTCCGGCGGACTGCAGATAATGATGTACGACA
TCGAAATCCTGGAAGGGCGGAAACTCGCTGTCCGGCGGCAAAAGGGCCAC
CAAATATTTCAGCTTGCGCGACGTGGCCTGCAAACGGTCGCCAATATCAA
TGCCCAATTTCTGGCACACCGACTCAATCATGCGATTCATCTTGGTCTCG
AAGTTGGTGGAGTTGTCGATCACATCGAAGTAGGGATGGCCAACCCAGGC
GGCGGCGGATTTGTAGTCCAGTTCCCGGGCCAAATCAACGCCCTCCGAGC
GACAGGCATGGTCCTCTGTGGAGTAGAAATCCTCGGCGCCGTTGGCAGCC
GAAACCAAGTGCAGGATTTGGGTTGTACGATTGTCGCGCATCTCCACGGG
ATCCCATTATTGCCCGCCATCATCTTTTCCCATTTATCTTTGGATATGTA
TGCACTGGCATCCATAACGCC

BO07486.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG30118-PA 1428 CG30118-RA 573..1425 871..19 4265 100 Minus
CG30118-PA 1428 CG30118-RA 472..537 971..906 305 98.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG30118-RA 2317 CG30118-RA 993..1946 971..19 4670 99.5 Minus
CG30118-RC 2584 CG30118-RC 1125..2018 971..79 4355 99.3 Minus
CG30118-RB 2030 CG30118-RB 993..1886 971..79 4355 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18431412..18431747 265..600 1665 99.7 Plus
2R 25286936 2R 18431108..18431358 19..269 1255 100 Plus
2R 25286936 2R 18431809..18432024 600..815 1080 100 Plus
2R 25286936 2R 18432444..18432586 813..954 560 94.4 Plus
Blast to na_te.dros performed on 2015-02-12 07:14:16 has no hits.

BO07486.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:10 Download gff for BO07486.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30118-PA 472..1428 18..971 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:58 Download gff for BO07486.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30118-PA 472..1428 18..971 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:25 Download gff for BO07486.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 993..1946 19..971 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:19:28 Download gff for BO07486.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 993..1946 19..971 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:19:28 Download gff for BO07486.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18431108..18431357 19..268 100 <- Plus
2R 18431416..18431746 269..599 100 <- Plus
2R 18431809..18432022 600..813 100 <- Plus
2R 18432445..18432581 814..949 96 <- Plus
2R 18432647..18432668 950..971 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:25 Download gff for BO07486.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14318613..14318862 19..268 100 <- Plus
arm_2R 14318921..14319251 269..599 100 <- Plus
arm_2R 14319314..14319527 600..813 100 <- Plus
arm_2R 14319950..14320086 814..949 96 <- Plus
arm_2R 14320152..14320173 950..971 100   Plus

BO07486.5prime Sequence

861 bp (857 high quality bases) assembled on 2006-01-06

> BO07486.5prime
GAAGTTATCAGTCGACATGGCCACCCTCCTCAGCAACGGACAGCAGTCGG
TAATGGCCAGCACCAGTAATGGTCAGGAGCAGCAACGGCACCAGGACGAA
CCGGAGCAGCAGCAGCAGGTCGAGATCAGAAAGTCGAGCTCACCGAAACC
AGGCGCCATGCCCAGCTTGAAGCTGAACAGAATGGGTTCGGTGTCACCGA
AAGATAAACGAGTCTACAAAATCGTCCTCACTGGCGGGCCTTGCGGCGGA
AAGACGACGGGACAGTCCCGCTTGTGCACTTTCTTCGAAAACCTTGGATG
GAAGGTATTCCGCGTGCCTGAAACGGCCACTGTTTTACTCAGTGGCGGTG
TGAAGTTCTCCGATCTGACCGAGAAAGAGGCCTACAAGTTCCAGGAGAAT
CTGATCCGCACCATGGTTCAAATTGAGAACACCTACTTTGAGCTGGGCAA
CTCCAGCAATCGCAACTGTCTGATAATCTGCGATCGCGGCGTTATGGATG
CCAGTGCATACATATCCAAGGATAAATGGGAAAAGATGATGGCGGGCAAT
AATTGGAATCCCGTGGAGATGCGCGACAATCGTTACAACCAAATCCTGCA
CTTGGTTTCGGCTGCCAACGGCGCCGAGGATTTCTACTCCACAGAGGACC
ATGCCTGTCGCTCGGAGGGCGTTGATTTGGCCCGGGAACTGGACTACAAA
TCCGCCGCCGCCTGGGTTGGCCATCCCTACTTCGATGTGATCGACAACTC
CACCAACTTCGAGACCAAGATGAATCGCATGATTGAGTCGGTGTGCCAGA
AATTGGGCATTGATATTGGCGACCGTTTGCAGGCCACGTCGCGCAAGCTG
AAATATTTGGT

BO07486.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG30118-PA 1428 CG30118-RA 1..845 17..861 4225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG30118-RB 2030 CG30118-RB 519..1366 14..861 4240 100 Plus
CG30118-RA 2317 CG30118-RA 519..1366 14..861 4240 100 Plus
CG30118-RC 2584 CG30118-RC 1017..1498 380..861 2410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18439734..18439957 237..14 1120 100 Minus
2R 25286936 2R 18431809..18432024 860..645 1080 100 Minus
2R 25286936 2R 18432444..18432586 647..505 700 99.3 Minus
2R 25286936 2R 18432647..18432776 509..380 650 100 Minus
2R 25286936 2R 18438206..18438276 306..236 355 100 Minus
2R 25286936 2R 18437575..18437614 380..341 200 100 Minus
2R 25286936 2R 18437940..18437979 342..303 200 100 Minus
Blast to na_te.dros performed 2015-02-12 14:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6807 31..117 135 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6819 58..117 135 71.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2764..2862 23..125 134 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6858 31..117 133 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2289..2363 37..118 132 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2460 31..156 127 63.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6782..6877 58..152 126 64.6 Plus
roo 9092 roo DM_ROO 9092bp 1061..1146 31..117 125 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2765..2825 57..118 118 67.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6765 74..117 112 72.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2275..2360 31..118 111 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6786 58..117 108 66.7 Plus

BO07486.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:10 Download gff for BO07486.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30118-PA 1..845 17..861 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:00 Download gff for BO07486.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30118-PA 1..845 17..861 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:05:40 Download gff for BO07486.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 514..1366 8..861 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:30 Download gff for BO07486.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 514..1366 8..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:30 Download gff for BO07486.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18432647..18432775 381..509 100 <- Minus
2R 18437575..18437612 343..380 100 <- Minus
2R 18437940..18437977 305..342 100 <- Minus
2R 18438208..18438275 237..304 100 <- Minus
2R 18439735..18439962 8..236 98   Minus
2R 18431807..18432022 647..861 99 <- Minus
2R 18432445..18432581 510..646 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:05:40 Download gff for BO07486.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14319312..14319527 647..861 99 <- Minus
arm_2R 14319950..14320086 510..646 100 <- Minus
arm_2R 14320152..14320280 381..509 100 <- Minus
arm_2R 14325080..14325117 343..380 100 <- Minus
arm_2R 14325445..14325482 305..342 100 <- Minus
arm_2R 14325713..14325780 237..304 100 <- Minus
arm_2R 14327240..14327467 8..236 98   Minus

BO07486.complete Sequence

1459 bp (1459 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630808

> BO07486.complete
GAAGTTATCAGTCGACATGGCCACCCTCCTCAGCAACGGACAGCAGTCGG
TAATGGCCAGCACCAGTAATGGTCAGGAGCAGCAACGGCACCAGGACGAA
CCGGAGCAGCAGCAGCAGGTCGAGATCAGAAAGTCGAGCTCACCGAAACC
AGGCGCCATGCCCAGCTTGAAGCTGAACAGAATGGGTTCGGTGTCACCGA
AAGATAAACGAGTCTACAAAATCGTCCTCACTGGCGGGCCTTGCGGCGGA
AAGACGACGGGACAGTCCCGCTTGTGCACTTTCTTCGAAAACCTTGGATG
GAAGGTATTCCGCGTGCCTGAAACGGCCACTGTTTTACTCAGTGGCGGTG
TGAAGTTCTCCGATCTGACCGAGAAAGAGGCCTACAAGTTCCAGGAGAAT
CTGATCCGCACCATGGTTCAAATTGAGAACACCTACTTTGAGCTGGGCAA
CTCCAGCAATCGCAACTGTCTGATAATCTGCGATCGCGGCGTTATGGATG
CCAGTGCATACATATCCAAGGATAAATGGGAAAAGATGATGGCGGGCAAT
AATTGGAATCCCGTGGAGATGCGCGACAATCGTTACAACCAAATCCTGCA
CTTGGTTTCGGCTGCCAACGGCGCCGAGGATTTCTACTCCACAGAGGACC
ATGCCTGTCGCTCGGAGGGCGTTGATTTGGCCCGGGAACTGGACTACAAA
TCCGCCGCCGCCTGGGTTGGCCATCCCTACTTCGATGTGATCGACAACTC
CACCAACTTCGAGACCAAGATGAATCGCATGATTGAGTCGGTGTGCCAGA
AATTGGGCATTGATATTGGCGACCGTTTGCAGGCCACGTCGCGCAAGCTG
AAATATTTGGTGGCCCTTTTGCCGCCGGACAGCGAGTTTCCGCCCTTCCA
GGATTTCGATGTCGTACATCATTATCTGCAGTCCGCCGGACCCAAGGTGC
AGGCTCGCCTTCGCAAGCGTGGACAGAAGAACCACTGGAGCTACATCCAC
ACGCAGCGGCGTCCAAACGTTCACGGGCAGGCCCGCATTGAGGTGAAGAC
CCAGCTGACGCATCGTGACTACATGAACTTGCTGGCCCAGCGCGACGATG
CTCACTTCACCATCTACAAGAAGCGCCGCTGCTTCCTTATCAACAACCAA
TATTTTCAGCTTGATATTTATAAGGAGCCAGGCCACCCACGCTGCAAGGG
ATTGGTGCTTTTGGAGACGTATTCGTCACTCACCGGCGATGCCCTGAAGA
ACTGCATGCCCAAGTTCCTGAACATTGTAAAGGAGGTGACCGGCGATCCG
GACTACTCCATGTTTAATCTATCCCTCAAGGAGGACTGGAGCACCACGAA
GAAGTTTTGCCGATCGGCGACGCACGGTAAGCAGGAGGAGCAGTCGCCAG
TGCCGGCAAAGCAGTATCATCCATATGACGAGAACAGCGATGCAAGCTTT
CTAGACCAT

BO07486.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG30118-RA 1428 CG30118-PA 1..1425 17..1441 7125 100 Plus
CG30118-RB 1416 CG30118-PB 1..1365 17..1381 6810 99.9 Plus
CG30118-RC 1548 CG30118-PC 496..1497 380..1381 4995 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG30118-RA 2317 CG30118-RA 519..1946 14..1441 7140 100 Plus
CG30118-RB 2030 CG30118-RB 519..1886 14..1381 6825 99.9 Plus
CG30118-RC 2584 CG30118-RC 1017..2018 380..1381 4995 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18431412..18431747 1195..860 1665 99.7 Minus
2R 25286936 2R 18431108..18431358 1441..1191 1255 100 Minus
2R 25286936 2R 18439734..18439957 237..14 1120 100 Minus
2R 25286936 2R 18431809..18432024 860..645 1080 100 Minus
2R 25286936 2R 18432444..18432586 647..505 700 99.3 Minus
2R 25286936 2R 18432647..18432776 509..380 650 100 Minus
2R 25286936 2R 18438206..18438276 306..236 355 100 Minus
2R 25286936 2R 18437575..18437614 380..341 200 100 Minus
2R 25286936 2R 18437940..18437979 342..303 200 100 Minus
Blast to na_te.dros performed 2014-11-27 13:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6807 31..117 135 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6819 58..117 135 71.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2764..2862 23..125 134 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6858 31..117 133 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2289..2363 37..118 132 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2460 31..156 127 63.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6782..6877 58..152 126 64.6 Plus
roo 9092 roo DM_ROO 9092bp 1061..1146 31..117 125 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2765..2825 57..118 118 67.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6765 74..117 112 72.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2275..2360 31..118 111 63.3 Plus

BO07486.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:10 Download gff for BO07486.complete
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 1..1428 17..1442 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:03 Download gff for BO07486.complete
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 520..1952 8..1441 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:12 Download gff for BO07486.complete
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 522..1946 17..1443 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:10 Download gff for BO07486.complete
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 520..1952 8..1441 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:44 Download gff for BO07486.complete
Subject Subject Range Query Range Percent Splice Strand
CG30118-RA 522..1946 17..1443 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:44 Download gff for BO07486.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18431106..18431357 1192..1443 99 <- Minus
2R 18431416..18431746 861..1191 100 <- Minus
2R 18431809..18432022 647..860 100 <- Minus
2R 18432445..18432581 510..646 100 <- Minus
2R 18432647..18432775 381..509 100 <- Minus
2R 18437575..18437612 343..380 100 <- Minus
2R 18437940..18437977 305..342 100 <- Minus
2R 18438208..18438275 237..304 100 <- Minus
2R 18439735..18439954 17..236 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:12 Download gff for BO07486.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14318611..14318862 1192..1443 99 <- Minus
arm_2R 14318921..14319251 861..1191 100 <- Minus
arm_2R 14319314..14319527 647..860 100 <- Minus
arm_2R 14319950..14320086 510..646 100 <- Minus
arm_2R 14320152..14320280 381..509 100 <- Minus
arm_2R 14325080..14325117 343..380 100 <- Minus
arm_2R 14325445..14325482 305..342 100 <- Minus
arm_2R 14325713..14325780 237..304 100 <- Minus
arm_2R 14327240..14327459 17..236 100   Minus

BO07486.pep Sequence

Translation from 16 to 1459

> BO07486.pep
MATLLSNGQQSVMASTSNGQEQQRHQDEPEQQQQVEIRKSSSPKPGAMPS
LKLNRMGSVSPKDKRVYKIVLTGGPCGGKTTGQSRLCTFFENLGWKVFRV
PETATVLLSGGVKFSDLTEKEAYKFQENLIRTMVQIENTYFELGNSSNRN
CLIICDRGVMDASAYISKDKWEKMMAGNNWNPVEMRDNRYNQILHLVSAA
NGAEDFYSTEDHACRSEGVDLARELDYKSAAAWVGHPYFDVIDNSTNFET
KMNRMIESVCQKLGIDIGDRLQATSRKLKYLVALLPPDSEFPPFQDFDVV
HHYLQSAGPKVQARLRKRGQKNHWSYIHTQRRPNVHGQARIEVKTQLTHR
DYMNLLAQRDDAHFTIYKKRRCFLINNQYFQLDIYKEPGHPRCKGLVLLE
TYSSLTGDALKNCMPKFLNIVKEVTGDPDYSMFNLSLKEDWSTTKKFCRS
ATHGKQEEQSPVPAKQYHPYDENSDASFLDH

BO07486.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG30118-PA 475 CG30118-PA 1..475 1..475 2532 100 Plus
CG30118-PB 471 CG30118-PB 1..455 1..455 2411 99.8 Plus
CG30118-PC 515 CG30118-PC 1..499 1..455 2356 91 Plus