Clone Sequence Records
BO07487.3prime Sequence
918 bp (844 high quality bases) assembled on 2006-01-06
> BO07487.3prime
ATGGTCTAGAAAGCTTGCGTCCTCGTGCAAGAATCGAGCTTGGTAGACAC
GATCTCGGTGAACTGGAGTCAGGACGGCATTGAGAATGGGTGAAATCCGC
CGAATCCGCTGCTGAAAGCGATCCCGATCTCGCGCCATTACCTGCCATTC
GCTCTTTCTGGCAGCCCGATAAGCGTAGTCCCAGGCGAGCATTACGTGAA
CTTCGGGTTTCATGTTGAAACGAACCTTCTTGACAGGAGTCGAGCTGTCG
TCGCTGCACTGGCAGGCCTTTAGCTCCTCGGTATTTTCATCCTCACCGCA
TGCTGTAAACTGCACGCTGCTGTCGTCGTCATCATCATCCTCGTCTTCCT
CGACATCCTCATCCGCCTGCTCTGCGTCGTCCTCAAAGCAAATGAAGCTG
TCCTCACTGCACTCGGAAATACTACGCTGCCGCTGCCAGGAGCTCTTGGC
AGCCGATCCTTGCGAACAGCCAGCGTTGTTATTCCGGTCACTGGAGGCTT
GACTAGTAGGGCAATCCTCCGCGGTATCCTTAAAGCCGTGGTGCGGATGC
AGGTCAATAAAGAAGTAGCACGAGGACGGTACGCAACGCCGCAAGGCGTC
CAACTCGATTCCCGCCATCTTGGCGCCCGGCGGACTCTGGGCGTTGACGC
ACTTGTGCAGGGCGGTCTGCATTTGAGTTACTACGTCCATAGCCATTAGC
TTGAAAGACATCATGGTGGCCAGCGGATTCAGGGGGTCTGGCTGCAGGGT
TGGGATCCGCAAATCCTCGGGGACTTCGAGCGGTTTGACCTCGGGTGCCT
CCTGATGCACCTTGTTTGGCTTCCACAGTGTACGTGATCCAGCGGAGAGG
GGACGTGACGGCCCGAACCGATATTGCTCGTAGATAGGGGGACTCATGTT
TTGCATCAGGCGGAGAAC
BO07487.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3825-PA | 954 | CG3825-RA | 69..951 | 901..19 | 4390 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gadd34-RA | 1597 | CG3825-RA | 416..1315 | 918..19 | 4440 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23976146..23976840 | 224..918 | 3415 | 99.4 | Plus |
| 2R | 25286936 | 2R | 23975881..23976089 | 19..227 | 1045 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 07:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 563..604 | 355..315 | 108 | 76.2 | Minus |
BO07487.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:11 Download gff for
BO07487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3825-PA | 52..954 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:02 Download gff for
BO07487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3825-PA | 52..954 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:27 Download gff for
BO07487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gadd34-RA | 416..1320 | 12..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:19:51 Download gff for
BO07487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gadd34-RA | 416..1320 | 12..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:19:51 Download gff for
BO07487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23975876..23976087 | 12..225 | 98 | <- | Plus |
| 2R | 23976148..23976840 | 226..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:27 Download gff for
BO07487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19863399..19863610 | 12..225 | 98 | <- | Plus |
| arm_2R | 19863671..19864363 | 226..918 | 99 | | Plus |
BO07487.5prime Sequence
882 bp (800 high quality bases) assembled on 2006-01-06
> BO07487.5prime
GAAGTTATCAGTCGACATGTCGAAATTTCACACCCTTATGGGCGCACTGT
TTGACCCCTTCCTCTTTGTTCTCCGCCTGATTGCAAACATGAGTTCCCCT
ATCTACGAGCAATATCGGTTCGGGCCGTCACGTCCCCTCTCCGCTGGATC
ACGTACACTGTGGAAGCCAAACAAGGTGCATCAGGAGGCACCCGAGGTCA
AACCGCTCGAAGTCCCCGAGGATTTGCGGATCCCAACCCTGCAGCCAGAC
CCCCTGAATCCGCTGGCCACCATGATGTCTTTCAAGCTAATGGCTATGGA
CGTAGTAACTCAAATGCAGACCGCCCTGCACAAGTGCGTCAACGCCCAGA
GTCCGCCGGGCGCCAAGATGGCGGGAATCGAGTTGGACGCCTTGCGGCGT
TGCGTACCGTCCTCGTGCTACTTCTTTATTGACCTGCATCCGCACCACGG
CTTTAAGGATACCGCGGAGGATTGCCCTACTAGTCAAGCCTCCAGTGACC
GGAATAACAACGCTGGCTGTTCGCAAGGATCGGCTGCCAAGAGCTCCTGG
CAGCGGCAGCGTAGTATTTCCGAGTGCAGTGAGGACAGCTTCATTTGCTT
TGAGGACGACGCAGAGCAGGCGGATGAGGATGTCGAGGAAGACGAGGATG
ATGATGACGACGACAGCAGCGTGCAGTTTACAGCATGCGGTGAGGATGAA
AATACCGAGGAGCTAAAGGCCTGCCAGTGCAGCGACGACAGCTCGACTCC
TGTCAAGAAGGTTCGTTTCAACATGAAACCCGAAGTTCACGTAATGCTCG
CCTGGGACTACGCTTATCGGGCTGCCAGAAAGAGCGAATGGCAGGTAATG
GCGCGAGATCGGGATCGCTTTCAGCAGCGGAT
BO07487.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3825-PA | 954 | CG3825-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gadd34-RA | 1597 | CG3825-RA | 365..1230 | 17..882 | 4330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23976146..23976891 | 762..17 | 3730 | 100 | Minus |
| 2R | 25286936 | 2R | 23975966..23976089 | 882..759 | 620 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 01:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 563..604 | 631..671 | 108 | 76.2 | Plus |
BO07487.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:12 Download gff for
BO07487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3825-PA | 1..866 | 17..882 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:03 Download gff for
BO07487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3825-PA | 1..866 | 17..882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:48 Download gff for
BO07487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gadd34-RA | 354..1230 | 5..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:24:19 Download gff for
BO07487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gadd34-RA | 354..1230 | 5..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:24:19 Download gff for
BO07487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23975966..23976087 | 761..882 | 100 | <- | Minus |
| 2R | 23976148..23976901 | 5..760 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:48 Download gff for
BO07487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19863489..19863610 | 761..882 | 100 | <- | Minus |
| arm_2R | 19863671..19864424 | 5..760 | 99 | | Minus |
BO07487.complete Sequence
985 bp (985 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630809
> BO07487.complete
GAAGTTATCAGTCGACATGTCGAAATTTCACACCCTTATGGGCGCACTGT
TTGACCCCTTCCTCTTTGTTCTCCGCCTGATTGCAAACATGAGTTCCCCT
ATCTACGAGCAATATCGGTTCGGGCCGTCACGTCCCCTCTCCGCTGGATC
ACGTACACTGTGGAAGCCAAACAAGGTGCATCAGGAGGCACCCGAGGTCA
AACCGCTCGAAGTCCCCGAGGATTTGCGGATCCCAACCCTGCAGCCAGAC
CCCCTGAATCCGCTGGCCACCATGATGTCTTTCAAGCTAATGGCTATGGA
CGTAGTAACTCAAATGCAGACCGCCCTGCACAAGTGCGTCAACGCCCAGA
GTCCGCCGGGCGCCAAGATGGCGGGAATCGAGTTGGACGCCTTGCGGCGT
TGCGTACCGTCCTCGTGCTACTTCTTTATTGACCTGCATCCGCACCACGG
CTTTAAGGATACCGCGGAGGATTGCCCTACTAGTCAAGCCTCCAGTGACC
GGAATAACAACGCTGGCTGTTCGCAAGGATCGGCTGCCAAGAGCTCCTGG
CAGCGGCAGCGTAGTATTTCCGAGTGCAGTGAGGACAGCTTCATTTGCTT
TGAGGACGACGCAGAGCAGGCGGATGAGGATGTCGAGGAAGACGAGGATG
ATGATGACGACGACAGCAGCGTGCAGTTTACAGCATGCGGTGAGGATGAA
AATACCGAGGAGCTAAAGGCCTGCCAGTGCAGCGACGACAGCTCGACTCC
TGTCAAGAAGGTTCGTTTCAACATGAAACCCGAAGTTCACGTAATGCTCG
CCTGGGACTACGCTTATCGGGCTGCCAGAAAGAGCGAATGGCAGGTAATG
GCGCGAGATCGGGATCGCTTTCAGCAGCGGATTCGGCGGATTTCACCCAT
TCTCAATGCCGTCCTGACTCCAGTTCACCGAGATCGTGTCTACCAAGCTC
GATTCTTGCACGAGGACGCAAGCTTTCTAGACCAT
BO07487.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:42:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gadd34-RA | 954 | CG3825-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gadd34-RA | 1597 | CG3825-RA | 365..1315 | 17..967 | 4755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23976146..23976891 | 762..17 | 3730 | 100 | Minus |
| 2R | 25286936 | 2R | 23975881..23976089 | 967..759 | 1045 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:42:26 has no hits.
BO07487.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:11 Download gff for
BO07487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3825-RA | 1..954 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:06 Download gff for
BO07487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3825-RA | 377..1343 | 5..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:14 Download gff for
BO07487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gadd34-RA | 365..1315 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:12 Download gff for
BO07487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3825-RA | 377..1343 | 5..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:10 Download gff for
BO07487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gadd34-RA | 365..1315 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:10 Download gff for
BO07487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23975877..23976087 | 761..969 | 99 | <- | Minus |
| 2R | 23976148..23976891 | 17..760 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:14 Download gff for
BO07487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19863400..19863610 | 761..969 | 99 | <- | Minus |
| arm_2R | 19863671..19864414 | 17..760 | 100 | | Minus |
BO07487.pep Sequence
Translation from 16 to 985
> BO07487.pep
MSKFHTLMGALFDPFLFVLRLIANMSSPIYEQYRFGPSRPLSAGSRTLWK
PNKVHQEAPEVKPLEVPEDLRIPTLQPDPLNPLATMMSFKLMAMDVVTQM
QTALHKCVNAQSPPGAKMAGIELDALRRCVPSSCYFFIDLHPHHGFKDTA
EDCPTSQASSDRNNNAGCSQGSAAKSSWQRQRSISECSEDSFICFEDDAE
QADEDVEEDEDDDDDDSSVQFTACGEDENTEELKACQCSDDSSTPVKKVR
FNMKPEVHVMLAWDYAYRAARKSEWQVMARDRDRFQQRIRRISPILNAVL
TPVHRDRVYQARFLHEDASFLDH
BO07487.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gadd34-PA | 317 | CG3825-PA | 1..317 | 1..317 | 1688 | 100 | Plus |
