Clone Sequence Records
BO07488.3prime Sequence
878 bp (820 high quality bases) assembled on 2006-01-06
> BO07488.3prime
ATGGTCTAGAAAGCTTGCCTTCTGCACCGGCTTCCCTCCCACGGACTCCT
CCTGGTCTCCCTTACGCAGAAGGTCTTCGATCTCCTTGCGCAACTTCTCT
GTGCCGGCGCAGATTAGATCCGGCTTCATTATGTCGAATGGTCCGCCAAA
GGGATGTGTTACCACGCCTCCCGCCTCCTTAACCAACAGGGAGCCGGCGG
CACAATCCCAGGGATACATGTCCTCAATGTAGAAGGCATCCAGATTGCCA
GCGGCCACCATGCACAGCTCATCCACCACACAGGAGTAGGCAACAAGTCG
TCTAGCATTCAATCCCACATGGTAGATCCTTTTGATATGCTTGTTGGCCA
CCGAATGGACATGCAGCAGGGACACTTCGTAGGCCACATTGGCATCCTTA
ACGCTCTCGCAGCTGCTCACGTGGATTGGTTTGCCATTGCAAAAGGCGCC
TTGGCCCAGTTTCGTTGTGAAGAGCTTTTTCTGGACAGGATTGTTGATTA
CTCCCACTACGATTTGTTTGTTGATTGCCAAACCGATTGAAACGCAAACG
TGTGGAATCTGCTTGATAAAGTTCGAAGTTCCATCGATGGGATCTATGAT
CCAGGTGGGAGCATTCGTCAGCTCTCCGGACACGTTGTTGTTCTTAGCCG
TCTCCTCCTCGCCGATGAACTTGTGATCCGGGTATCTGGCCAATATTTTC
TCCATGAGAAAGTCCTCAATCTTGTTGTCGTAGTCGGTGACCACGTCGTA
GAAATCGCCTTTGATTGAGACGTTTTTACTGGCCATCTCGTAGCCCTCCA
TGAAGATCTCGCCCGCTTTGATGGCCAGGGGATGGATAAAGTTGTACAAC
TCCTCGATATCAGCTTGACTTACTCCTG
BO07488.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17027-PA | 867 | CG17027-RA | 5..864 | 878..19 | 4275 | 99.8 | Minus |
CG17026-PA | 855 | CG17026-RA | 258..332 | 625..551 | 225 | 92 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:03:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17027-RB | 1558 | CG17027-RB | 275..1134 | 878..19 | 4285 | 99.9 | Minus |
CG17027-RA | 1362 | CG17027-RA | 79..938 | 878..19 | 4285 | 99.9 | Minus |
CG17026-RA | 1004 | CG17026-RA | 232..877 | 741..96 | 1085 | 78.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15980374..15980953 | 878..299 | 2885 | 99.8 | Minus |
3L | 28110227 | 3L | 15981184..15981464 | 299..19 | 1405 | 100 | Minus |
3L | 28110227 | 3L | 15975599..15976039 | 741..301 | 735 | 77.8 | Minus |
3L | 28110227 | 3L | 15976117..15976301 | 280..96 | 355 | 79.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:02:59 has no hits.
BO07488.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:13 Download gff for
BO07488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-PA | 5..867 | 15..878 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:05 Download gff for
BO07488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-PA | 5..867 | 15..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:54 Download gff for
BO07488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 79..944 | 10..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:13 Download gff for
BO07488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 79..944 | 10..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:13 Download gff for
BO07488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15980374..15980953 | 299..878 | 99 | -> | Minus |
3L | 15981185..15981470 | 10..298 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:54 Download gff for
BO07488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15973474..15974053 | 299..878 | 99 | -> | Minus |
arm_3L | 15974285..15974570 | 10..298 | 98 | | Minus |
BO07488.5prime Sequence
836 bp (821 high quality bases) assembled on 2006-01-06
> BO07488.5prime
GAAGTTATCAGTCGACATGGCAGGAGTAAGTCAAGCTGATATCGAGGAGT
TGTACAACTTTATCCATCCCCTGGCCATCAAAGCGGGCGAGATCCTCATG
GAGGGCTACGAGATGGCCAGTAAAAACGTCTCAATCAAAGGCGATTTCTA
CGACGTGGTCACCGACTACGACAACAAGATTGAGGACTTTCTCATGGAGA
AAATATTGGCCAGATACCCGGATCACAAGTTCATCGGCGAGGAGGAGACG
GCTAAGAACAACAACGTGTCCGGAGAGCTGACGAATGCTCCCACCTGGAT
CATAGATCCCATCGATGGAACTTCGAACTTTATCAAGCAGATTCCACACG
TTTGCGTTTCAATCGGTTTGGCAATCAACAAACAAATCGTAGTGGGAGTA
ATCAACAATCCTGTCCAGAAAAAGCTCTTCACAACGAAACTGGGCCAAGG
CGCCTTTTGCAATGGCAAACCAATCCACGTGAGCAGCTGCGAGAGCGTTA
AGGATGCCAATGTGGCCTACGAAGTGTCCCTGCTGCATGTCCATTCGGTG
GCCAACAAGCATATCAAAAGGATCTACCATGTGGGATTGAATGCTAGACG
ACTTGTTGCCTACTCCTGTGTGGTGGATGAGCTGTGCATGGTGGCCGCTG
GCAATCTGGATGCCTTCTACATTGAGGACATGTATCCCTGGGATTGTGCC
GCCGGCTCCCTGTTGGTTAAGGAGGCGGGAGGCGTGGTAACACATCCCTT
TGGCGGACCATTCGACATAATGAAGCCGGATCTAATCTGCGCCGGCACAG
AGAAGTTGCGCAAGGAGATCGAAGACCTTCTGCGTA
BO07488.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17027-PA | 867 | CG17027-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
CG17026-PA | 855 | CG17026-RA | 258..332 | 274..348 | 225 | 92 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17027-RB | 1558 | CG17027-RB | 271..1090 | 17..836 | 4100 | 100 | Plus |
CG17027-RA | 1362 | CG17027-RA | 75..894 | 17..836 | 4100 | 100 | Plus |
CG17026-RA | 1004 | CG17026-RA | 232..877 | 158..803 | 1085 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:25:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15980370..15980953 | 17..600 | 2920 | 100 | Plus |
3L | 28110227 | 3L | 15981184..15981420 | 600..836 | 1185 | 100 | Plus |
3L | 28110227 | 3L | 15975599..15976039 | 158..598 | 735 | 77.8 | Plus |
3L | 28110227 | 3L | 15976117..15976301 | 619..803 | 355 | 79.5 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:25:32 has no hits.
BO07488.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:15 Download gff for
BO07488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:06 Download gff for
BO07488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:25:22 Download gff for
BO07488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 65..893 | 6..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:49:28 Download gff for
BO07488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 65..893 | 6..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:49:28 Download gff for
BO07488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15980360..15980953 | 6..600 | 99 | -> | Plus |
3L | 15981185..15981419 | 601..835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:25:22 Download gff for
BO07488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15974285..15974519 | 601..835 | 100 | | Plus |
arm_3L | 15973460..15974053 | 6..600 | 99 | -> | Plus |
BO07488.complete Sequence
898 bp (898 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630810
> BO07488.complete
GAAGTTATCAGTCGACATGGCAGGAGTAAGTCAAGCTGATATCGAGGAGT
TGTACAACTTTATCCATCCCCTGGCCATCAAAGCGGGCGAGATCCTCATG
GAGGGCTACGAGATGGCCAGTAAAAACGTCTCAATCAAAGGCGATTTCTA
CGACGTGGTCACCGACTACGACAACAAGATTGAGGACTTTCTCATGGAGA
AAATATTGGCCAGATACCCGGATCACAAGTTCATCGGCGAGGAGGAGACG
GCTAAGAACAACAACGTGTCCGGAGAGCTGACGAATGCTCCCACCTGGAT
CATAGATCCCATCGATGGAACTTCGAACTTTATCAAGCAGATTCCACACG
TTTGCGTTTCAATCGGTTTGGCAATCAACAAACAAATCGTAGTGGGAGTA
ATCAACAATCCTGTCCAGAAAAAGCTCTTCACAACGAAACTGGGCCAAGG
CGCCTTTTGCAATGGCAAACCAATCCACGTGAGCAGCTGCGAGAGCGTTA
AGGATGCCAATGTGGCCTACGAAGTGTCCCTGCTGCATGTCCATTCGGTG
GCCAACAAGCATATCAAAAGGATCTACCATGTGGGATTGAATGCTAGACG
ACTTGTTGCCTACTCCTGTGTGGTGGATGAGCTGTGCATGGTGGCCGCTG
GCAATCTGGATGCCTTCTACATTGAGGACATGTATCCCTGGGATTGTGCC
GCCGGCTCCCTGTTGGTTAAGGAGGCGGGAGGCGTGGTAACACATCCCTT
TGGCGGACCATTCGACATAATGAAGCCGGATCTAATCTGCGCCGGCACAG
AGAAGTTGCGCAAGGAGATCGAAGACCTTCTGCGTAAGGGAGACCAGGAG
GAGTCCGTGGGAGGGAAGCCGGTGCAGAAGGCAAGCTTTCTAGACCAT
BO07488.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17027-RB | 867 | CG17027-PB | 1..864 | 17..880 | 4320 | 100 | Plus |
CG17027-RA | 867 | CG17027-PA | 1..864 | 17..880 | 4320 | 100 | Plus |
CG17026-RA | 855 | CG17026-PA | 142..787 | 158..803 | 1070 | 77.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17027-RB | 1558 | CG17027-RB | 271..1134 | 17..880 | 4320 | 100 | Plus |
CG17027-RA | 1362 | CG17027-RA | 75..938 | 17..880 | 4320 | 100 | Plus |
CG17026-RA | 1004 | CG17026-RA | 232..877 | 158..803 | 1070 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15980370..15980953 | 17..600 | 2920 | 100 | Plus |
3L | 28110227 | 3L | 15981184..15981464 | 600..880 | 1405 | 100 | Plus |
3L | 28110227 | 3L | 15975599..15976039 | 158..598 | 735 | 77.8 | Plus |
3L | 28110227 | 3L | 15976117..15976301 | 619..803 | 355 | 79.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:55:57 has no hits.
BO07488.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:13 Download gff for
BO07488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 1..867 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:56 Download gff for
BO07488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 405..1284 | 6..889 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:57 Download gff for
BO07488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 75..938 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:13 Download gff for
BO07488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 405..1284 | 6..889 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:06 Download gff for
BO07488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 75..938 | 17..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:06 Download gff for
BO07488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15980370..15980953 | 17..600 | 100 | -> | Plus |
3L | 15981185..15981464 | 601..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:57 Download gff for
BO07488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15973470..15974053 | 17..600 | 100 | -> | Plus |
arm_3L | 15974285..15974564 | 601..882 | 99 | | Plus |
BO07488.pep Sequence
Translation from 16 to 898
> BO07488.pep
MAGVSQADIEELYNFIHPLAIKAGEILMEGYEMASKNVSIKGDFYDVVTD
YDNKIEDFLMEKILARYPDHKFIGEEETAKNNNVSGELTNAPTWIIDPID
GTSNFIKQIPHVCVSIGLAINKQIVVGVINNPVQKKLFTTKLGQGAFCNG
KPIHVSSCESVKDANVAYEVSLLHVHSVANKHIKRIYHVGLNARRLVAYS
CVVDELCMVAAGNLDAFYIEDMYPWDCAAGSLLVKEAGGVVTHPFGGPFD
IMKPDLICAGTEKLRKEIEDLLRKGDQEESVGGKPVQKASFLDH
BO07488.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17027-PB | 288 | CG17027-PB | 1..288 | 1..288 | 1510 | 100 | Plus |
CG17027-PA | 288 | CG17027-PA | 1..288 | 1..288 | 1510 | 100 | Plus |
CG17026-PA | 284 | CG17026-PA | 4..284 | 5..284 | 1170 | 77.6 | Plus |
CG17029-PB | 284 | CG17029-PB | 3..277 | 2..277 | 713 | 46.7 | Plus |
CG17029-PA | 284 | CG17029-PA | 3..277 | 2..277 | 713 | 46.7 | Plus |