Clone BO07488 Report

Search the DGRC for BO07488

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG17027-RA
Protein status:BO07488.pep: validated full length
Sequenced Size:898

Clone Sequence Records

BO07488.3prime Sequence

878 bp (820 high quality bases) assembled on 2006-01-06

> BO07488.3prime
ATGGTCTAGAAAGCTTGCCTTCTGCACCGGCTTCCCTCCCACGGACTCCT
CCTGGTCTCCCTTACGCAGAAGGTCTTCGATCTCCTTGCGCAACTTCTCT
GTGCCGGCGCAGATTAGATCCGGCTTCATTATGTCGAATGGTCCGCCAAA
GGGATGTGTTACCACGCCTCCCGCCTCCTTAACCAACAGGGAGCCGGCGG
CACAATCCCAGGGATACATGTCCTCAATGTAGAAGGCATCCAGATTGCCA
GCGGCCACCATGCACAGCTCATCCACCACACAGGAGTAGGCAACAAGTCG
TCTAGCATTCAATCCCACATGGTAGATCCTTTTGATATGCTTGTTGGCCA
CCGAATGGACATGCAGCAGGGACACTTCGTAGGCCACATTGGCATCCTTA
ACGCTCTCGCAGCTGCTCACGTGGATTGGTTTGCCATTGCAAAAGGCGCC
TTGGCCCAGTTTCGTTGTGAAGAGCTTTTTCTGGACAGGATTGTTGATTA
CTCCCACTACGATTTGTTTGTTGATTGCCAAACCGATTGAAACGCAAACG
TGTGGAATCTGCTTGATAAAGTTCGAAGTTCCATCGATGGGATCTATGAT
CCAGGTGGGAGCATTCGTCAGCTCTCCGGACACGTTGTTGTTCTTAGCCG
TCTCCTCCTCGCCGATGAACTTGTGATCCGGGTATCTGGCCAATATTTTC
TCCATGAGAAAGTCCTCAATCTTGTTGTCGTAGTCGGTGACCACGTCGTA
GAAATCGCCTTTGATTGAGACGTTTTTACTGGCCATCTCGTAGCCCTCCA
TGAAGATCTCGCCCGCTTTGATGGCCAGGGGATGGATAAAGTTGTACAAC
TCCTCGATATCAGCTTGACTTACTCCTG

BO07488.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17027-PA 867 CG17027-RA 5..864 878..19 4275 99.8 Minus
CG17026-PA 855 CG17026-RA 258..332 625..551 225 92 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17027-RB 1558 CG17027-RB 275..1134 878..19 4285 99.9 Minus
CG17027-RA 1362 CG17027-RA 79..938 878..19 4285 99.9 Minus
CG17026-RA 1004 CG17026-RA 232..877 741..96 1085 78.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15980374..15980953 878..299 2885 99.8 Minus
3L 28110227 3L 15981184..15981464 299..19 1405 100 Minus
3L 28110227 3L 15975599..15976039 741..301 735 77.8 Minus
3L 28110227 3L 15976117..15976301 280..96 355 79.5 Minus
Blast to na_te.dros performed on 2015-02-12 00:02:59 has no hits.

BO07488.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:13 Download gff for BO07488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17027-PA 5..867 15..878 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:05 Download gff for BO07488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17027-PA 5..867 15..878 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:54 Download gff for BO07488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 79..944 10..878 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:13 Download gff for BO07488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 79..944 10..878 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:13 Download gff for BO07488.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15980374..15980953 299..878 99 -> Minus
3L 15981185..15981470 10..298 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:54 Download gff for BO07488.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15973474..15974053 299..878 99 -> Minus
arm_3L 15974285..15974570 10..298 98   Minus

BO07488.5prime Sequence

836 bp (821 high quality bases) assembled on 2006-01-06

> BO07488.5prime
GAAGTTATCAGTCGACATGGCAGGAGTAAGTCAAGCTGATATCGAGGAGT
TGTACAACTTTATCCATCCCCTGGCCATCAAAGCGGGCGAGATCCTCATG
GAGGGCTACGAGATGGCCAGTAAAAACGTCTCAATCAAAGGCGATTTCTA
CGACGTGGTCACCGACTACGACAACAAGATTGAGGACTTTCTCATGGAGA
AAATATTGGCCAGATACCCGGATCACAAGTTCATCGGCGAGGAGGAGACG
GCTAAGAACAACAACGTGTCCGGAGAGCTGACGAATGCTCCCACCTGGAT
CATAGATCCCATCGATGGAACTTCGAACTTTATCAAGCAGATTCCACACG
TTTGCGTTTCAATCGGTTTGGCAATCAACAAACAAATCGTAGTGGGAGTA
ATCAACAATCCTGTCCAGAAAAAGCTCTTCACAACGAAACTGGGCCAAGG
CGCCTTTTGCAATGGCAAACCAATCCACGTGAGCAGCTGCGAGAGCGTTA
AGGATGCCAATGTGGCCTACGAAGTGTCCCTGCTGCATGTCCATTCGGTG
GCCAACAAGCATATCAAAAGGATCTACCATGTGGGATTGAATGCTAGACG
ACTTGTTGCCTACTCCTGTGTGGTGGATGAGCTGTGCATGGTGGCCGCTG
GCAATCTGGATGCCTTCTACATTGAGGACATGTATCCCTGGGATTGTGCC
GCCGGCTCCCTGTTGGTTAAGGAGGCGGGAGGCGTGGTAACACATCCCTT
TGGCGGACCATTCGACATAATGAAGCCGGATCTAATCTGCGCCGGCACAG
AGAAGTTGCGCAAGGAGATCGAAGACCTTCTGCGTA

BO07488.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17027-PA 867 CG17027-RA 1..820 17..836 4100 100 Plus
CG17026-PA 855 CG17026-RA 258..332 274..348 225 92 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17027-RB 1558 CG17027-RB 271..1090 17..836 4100 100 Plus
CG17027-RA 1362 CG17027-RA 75..894 17..836 4100 100 Plus
CG17026-RA 1004 CG17026-RA 232..877 158..803 1085 78.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15980370..15980953 17..600 2920 100 Plus
3L 28110227 3L 15981184..15981420 600..836 1185 100 Plus
3L 28110227 3L 15975599..15976039 158..598 735 77.8 Plus
3L 28110227 3L 15976117..15976301 619..803 355 79.5 Plus
Blast to na_te.dros performed on 2015-02-04 20:25:32 has no hits.

BO07488.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:15 Download gff for BO07488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17027-PA 1..819 17..835 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:06 Download gff for BO07488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17027-PA 1..819 17..835 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:25:22 Download gff for BO07488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 65..893 6..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:49:28 Download gff for BO07488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 65..893 6..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:49:28 Download gff for BO07488.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15980360..15980953 6..600 99 -> Plus
3L 15981185..15981419 601..835 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:25:22 Download gff for BO07488.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15974285..15974519 601..835 100   Plus
arm_3L 15973460..15974053 6..600 99 -> Plus

BO07488.complete Sequence

898 bp (898 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630810

> BO07488.complete
GAAGTTATCAGTCGACATGGCAGGAGTAAGTCAAGCTGATATCGAGGAGT
TGTACAACTTTATCCATCCCCTGGCCATCAAAGCGGGCGAGATCCTCATG
GAGGGCTACGAGATGGCCAGTAAAAACGTCTCAATCAAAGGCGATTTCTA
CGACGTGGTCACCGACTACGACAACAAGATTGAGGACTTTCTCATGGAGA
AAATATTGGCCAGATACCCGGATCACAAGTTCATCGGCGAGGAGGAGACG
GCTAAGAACAACAACGTGTCCGGAGAGCTGACGAATGCTCCCACCTGGAT
CATAGATCCCATCGATGGAACTTCGAACTTTATCAAGCAGATTCCACACG
TTTGCGTTTCAATCGGTTTGGCAATCAACAAACAAATCGTAGTGGGAGTA
ATCAACAATCCTGTCCAGAAAAAGCTCTTCACAACGAAACTGGGCCAAGG
CGCCTTTTGCAATGGCAAACCAATCCACGTGAGCAGCTGCGAGAGCGTTA
AGGATGCCAATGTGGCCTACGAAGTGTCCCTGCTGCATGTCCATTCGGTG
GCCAACAAGCATATCAAAAGGATCTACCATGTGGGATTGAATGCTAGACG
ACTTGTTGCCTACTCCTGTGTGGTGGATGAGCTGTGCATGGTGGCCGCTG
GCAATCTGGATGCCTTCTACATTGAGGACATGTATCCCTGGGATTGTGCC
GCCGGCTCCCTGTTGGTTAAGGAGGCGGGAGGCGTGGTAACACATCCCTT
TGGCGGACCATTCGACATAATGAAGCCGGATCTAATCTGCGCCGGCACAG
AGAAGTTGCGCAAGGAGATCGAAGACCTTCTGCGTAAGGGAGACCAGGAG
GAGTCCGTGGGAGGGAAGCCGGTGCAGAAGGCAAGCTTTCTAGACCAT

BO07488.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17027-RB 867 CG17027-PB 1..864 17..880 4320 100 Plus
CG17027-RA 867 CG17027-PA 1..864 17..880 4320 100 Plus
CG17026-RA 855 CG17026-PA 142..787 158..803 1070 77.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17027-RB 1558 CG17027-RB 271..1134 17..880 4320 100 Plus
CG17027-RA 1362 CG17027-RA 75..938 17..880 4320 100 Plus
CG17026-RA 1004 CG17026-RA 232..877 158..803 1070 77.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15980370..15980953 17..600 2920 100 Plus
3L 28110227 3L 15981184..15981464 600..880 1405 100 Plus
3L 28110227 3L 15975599..15976039 158..598 735 77.8 Plus
3L 28110227 3L 15976117..15976301 619..803 355 79.5 Plus
Blast to na_te.dros performed on 2014-11-27 13:55:57 has no hits.

BO07488.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:13 Download gff for BO07488.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 1..867 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:56 Download gff for BO07488.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 405..1284 6..889 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:57 Download gff for BO07488.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 75..938 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:13 Download gff for BO07488.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 405..1284 6..889 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:06 Download gff for BO07488.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 75..938 17..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:06 Download gff for BO07488.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15980370..15980953 17..600 100 -> Plus
3L 15981185..15981464 601..882 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:57 Download gff for BO07488.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15973470..15974053 17..600 100 -> Plus
arm_3L 15974285..15974564 601..882 99   Plus

BO07488.pep Sequence

Translation from 16 to 898

> BO07488.pep
MAGVSQADIEELYNFIHPLAIKAGEILMEGYEMASKNVSIKGDFYDVVTD
YDNKIEDFLMEKILARYPDHKFIGEEETAKNNNVSGELTNAPTWIIDPID
GTSNFIKQIPHVCVSIGLAINKQIVVGVINNPVQKKLFTTKLGQGAFCNG
KPIHVSSCESVKDANVAYEVSLLHVHSVANKHIKRIYHVGLNARRLVAYS
CVVDELCMVAAGNLDAFYIEDMYPWDCAAGSLLVKEAGGVVTHPFGGPFD
IMKPDLICAGTEKLRKEIEDLLRKGDQEESVGGKPVQKASFLDH

BO07488.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17027-PB 288 CG17027-PB 1..288 1..288 1510 100 Plus
CG17027-PA 288 CG17027-PA 1..288 1..288 1510 100 Plus
CG17026-PA 284 CG17026-PA 4..284 5..284 1170 77.6 Plus
CG17029-PB 284 CG17029-PB 3..277 2..277 713 46.7 Plus
CG17029-PA 284 CG17029-PA 3..277 2..277 713 46.7 Plus