Clone BO07490 Report

Search the DGRC for BO07490

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG7830-RA
Protein status:BO07490.pep: validated full length
Sequenced Size:1024

Clone Sequence Records

BO07490.3prime Sequence

838 bp (828 high quality bases) assembled on 2006-01-06

> BO07490.3prime
ATGGTCTAGAAAGCTTGCTTTGAACAAGAAACTATAGGGATAACCCTGCG
CCTTCGAACGAAAAACGGACAACAGGAAGGAGAAGAACACGGTGAGGAGC
ACCAAACCAGTCATCGCCATTATCCTGTTCTTGTTGTGAGCCTTTGGTGT
TCCCGATTCAATCAGCAGAATCATGCCCAGCACAATCATGGCATTCAGGA
ACATGACGATATAGGTCTCCACCACCAGCTGGCCCTGCGAGGAGCCATGG
ATGTAGGCCACGCCACCATTTTGCGACTTGTGGACCAGCGGTGGTCCACG
GATATGATTCCACATTTGACCCGAGATCATGGCGAAGCAGAAGAATACTG
CGATGGCACCCCACAGATTCTTGTTGTACAAGAACTCCAAGTTATTTCGC
CGAATGTAAAGAAAACTTCCCACCAGGGCCACCAATGTGATCATGGCCAC
GGTGCCAGAATAGTTTGGTGGACGGAAAATGCGAATGGTGATGTCCGTTC
GCTCGGCAACGAATTTCGCAATAGAATCGGCGGCGAAGCCGACGCGATGG
ATATCCATGGTGTCAGCTCCCTTTGGCTTGCCCTTGGCCGGGAAATGCAT
GAACACCGGGGCGGTGTTCAGGCGCAGAAGTTGGAAAACCTCGGAGCCGT
CATCGAAATCCACCATAGCAAAGAAGAGTTTGTTGGAGTAAGTCGAGGAG
AAGCGGTAGGAGTTGGCCACGATGGCGAACTCGTCGTGGGCGTGCCTACA
GATCTGGCATTGTCTCGATGGAGCCAATGCGGTGAGCATTACGATCATCG
AGTAATTCCGTGGTGCACTCTTCACATACTCCCGAAAC

BO07490.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7830-PA 993 CG7830-RA 171..990 838..19 4100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
Ostgamma-RA 1245 CG7830-RA 294..1113 838..19 4100 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8307147..8307790 195..838 3220 100 Plus
2L 23513712 2L 8306906..8307068 32..194 815 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:49:07 has no hits.

BO07490.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:17 Download gff for BO07490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7830-PA 171..993 18..838 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:10 Download gff for BO07490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7830-PA 171..993 18..838 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:49 Download gff for BO07490.3prime
Subject Subject Range Query Range Percent Splice Strand
Ostgamma-RA 294..1113 19..838 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:24:47 Download gff for BO07490.3prime
Subject Subject Range Query Range Percent Splice Strand
Ostgamma-RA 294..1113 19..838 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:24:47 Download gff for BO07490.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8306906..8307068 32..194 100 <- Plus
2L 8307147..8307790 195..838 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:49 Download gff for BO07490.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8306906..8307068 32..194 100 <- Plus
arm_2L 8307147..8307790 195..838 100   Plus

BO07490.5prime Sequence

876 bp (763 high quality bases) assembled on 2006-01-06

> BO07490.5prime
GAAGTTATCAGTCGACATGAGACTGCTGCACAAGACGCTGCTCAGCGGTC
TGCTGGTAGTGGCGTTATTCGCTATTTACGCAGCCGCGCAATCAAAATCG
AAGACGGGACTCTCGCTGTCGGAAAAAGTACAAAACCTGGTGGACATGAA
CGCCAAAAAGCCGCTGCTCCGCTTCAATGGACCCAAGTTTCGGGAGTATG
TGAAGAGTGCACCACGGAATTACTCGATGATCGTAATGCTCACCGCATTG
GCTCCATCGAGACAATGCCAGATCTGTAGGCACGCCCACGACGAGTTCGC
CATCGTGGCCAACTCCTACCGCTTCTCCTCGACTTACTCCAACAAACTCT
TCTTTGCTATGGTGGATTTCGATGACGGCTCCGAGGTTTTCCAACTTCTG
CGCCTGAACACCGCCCCGGTGTTCATGCATTTCCCGGCCAAGGGCAAGCC
AAAGGGAGCTGACACCATGGATATCCATCGCGTCGGCTTCGCCGCCGATT
CTATTGCGAAATTCGTTGCCGAGCGAACGGACATCACCATTCGCATTTTC
CGTCCACCAAACTATTCTGGCACCGTGGCCATGATCACATTGGTGGCCCT
GGTGGGAAGTTTTCTTTACATTCGGCGAAATAACTTGGAGTTCTTGTACA
ACAAGAATCTGTGGGGTGCCATCGCAGTATTCTTCTGCTTCGCCATGATC
TCGGGTCAAATGTGGAATCATATCCGTGGACCACCGCTGGTCCACAAGTC
GCAAAATGGTGGCGTGGCCTACATCCATGGCTCCTCGCAGGGCCAGCTGG
TGGTGGAGACCTATATCGTCATGTTCCTGAATGCCATGATTGTGCTGGGC
ATGATTCTGCTGATTGAATCGGGAAC

BO07490.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7830-PA 993 CG7830-RA 1..860 17..876 4300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
Ostgamma-RA 1245 CG7830-RA 124..983 17..876 4300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8307147..8307875 830..102 3645 100 Minus
2L 23513712 2L 8307983..8308069 103..17 435 100 Minus
2L 23513712 2L 8307023..8307068 876..831 230 100 Minus
Blast to na_te.dros performed on 2015-02-12 23:33:17 has no hits.

BO07490.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:18 Download gff for BO07490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7830-PA 1..860 17..876 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:11 Download gff for BO07490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7830-PA 1..860 17..876 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:19 Download gff for BO07490.5prime
Subject Subject Range Query Range Percent Splice Strand
Ostgamma-RA 122..983 14..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:32:31 Download gff for BO07490.5prime
Subject Subject Range Query Range Percent Splice Strand
Ostgamma-RA 122..983 14..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:32:31 Download gff for BO07490.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8307023..8307068 831..876 100 <- Minus
2L 8307147..8307873 104..830 100 <- Minus
2L 8307983..8308071 14..103 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:19 Download gff for BO07490.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8307023..8307068 831..876 100 <- Minus
arm_2L 8307147..8307873 104..830 100 <- Minus
arm_2L 8307983..8308071 14..103 98   Minus

BO07490.complete Sequence

1024 bp (1024 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630811

> BO07490.complete
GAAGTTATCAGTCGACATGAGACTGCTGCACAAGACGCTGCTCAGCGGTC
TGCTGGTAGTGGCGTTATTCGCTATTTACGCAGCCGCGCAATCAAAATCG
AAGACGGGACTCTCGCTGTCGGAAAAAGTACAAAACCTGGTGGACATGAA
CGCCAAAAAGCCGCTGCTCCGCTTCAATGGACCCAAGTTTCGGGAGTATG
TGAAGAGTGCACCACGGAATTACTCGATGATCGTAATGCTCACCGCATTG
GCTCCATCGAGACAATGCCAGATCTGTAGGCACGCCCACGACGAGTTCGC
CATCGTGGCCAACTCCTACCGCTTCTCCTCGACTTACTCCAACAAACTCT
TCTTTGCTATGGTGGATTTCGATGACGGCTCCGAGGTTTTCCAACTTCTG
CGCCTGAACACCGCCCCGGTGTTCATGCATTTCCCGGCCAAGGGCAAGCC
AAAGGGAGCTGACACCATGGATATCCATCGCGTCGGCTTCGCCGCCGATT
CTATTGCGAAATTCGTTGCCGAGCGAACGGACATCACCATTCGCATTTTC
CGTCCACCAAACTATTCTGGCACCGTGGCCATGATCACATTGGTGGCCCT
GGTGGGAAGTTTTCTTTACATTCGGCGAAATAACTTGGAGTTCTTGTACA
ACAAGAATCTGTGGGGTGCCATCGCAGTATTCTTCTGCTTCGCCATGATC
TCGGGTCAAATGTGGAATCATATCCGTGGACCACCGCTGGTCCACAAGTC
GCAAAATGGTGGCGTGGCCTACATCCATGGCTCCTCGCAGGGCCAGCTGG
TGGTGGAGACCTATATCGTCATGTTCCTGAATGCCATGATTGTGCTGGGC
ATGATTCTGCTGATTGAATCGGGAACACCAAAGGCTCACAACAAGAACAG
GATAATGGCGATGACTGGTTTGGTGCTCCTCACCGTGTTCTTCTCCTTCC
TGTTGTCCGTTTTTCGTTCGAAGGCGCAGGGTTATCCCTATAGTTTCTTG
TTCAAAGCAAGCTTTCTAGACCAT

BO07490.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
Ostgamma-RA 993 CG7830-PA 1..990 17..1006 4950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
Ostgamma-RA 1245 CG7830-RA 124..1113 17..1006 4950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8307147..8307875 830..102 3645 100 Minus
2L 23513712 2L 8306906..8307068 993..831 815 100 Minus
2L 23513712 2L 8307983..8308069 103..17 435 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:45:29 has no hits.

BO07490.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:36 Download gff for BO07490.complete
Subject Subject Range Query Range Percent Splice Strand
CG7830-RA 1..993 17..1007 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:49 Download gff for BO07490.complete
Subject Subject Range Query Range Percent Splice Strand
CG7830-RA 118..1109 14..1006 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:56 Download gff for BO07490.complete
Subject Subject Range Query Range Percent Splice Strand
Ostgamma-RA 124..1113 17..1008 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:36 Download gff for BO07490.complete
Subject Subject Range Query Range Percent Splice Strand
CG7830-RA 118..1109 14..1006 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:08 Download gff for BO07490.complete
Subject Subject Range Query Range Percent Splice Strand
Ostgamma-RA 124..1113 17..1008 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:08 Download gff for BO07490.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8306906..8307068 831..993 100 <- Minus
2L 8307147..8307873 104..830 100 <- Minus
2L 8307983..8308069 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:56 Download gff for BO07490.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8306906..8307068 831..993 100 <- Minus
arm_2L 8307147..8307873 104..830 100 <- Minus
arm_2L 8307983..8308069 17..103 100   Minus

BO07490.pep Sequence

Translation from 16 to 1024

> BO07490.pep
MRLLHKTLLSGLLVVALFAIYAAAQSKSKTGLSLSEKVQNLVDMNAKKPL
LRFNGPKFREYVKSAPRNYSMIVMLTALAPSRQCQICRHAHDEFAIVANS
YRFSSTYSNKLFFAMVDFDDGSEVFQLLRLNTAPVFMHFPAKGKPKGADT
MDIHRVGFAADSIAKFVAERTDITIRIFRPPNYSGTVAMITLVALVGSFL
YIRRNNLEFLYNKNLWGAIAVFFCFAMISGQMWNHIRGPPLVHKSQNGGV
AYIHGSSQGQLVVETYIVMFLNAMIVLGMILLIESGTPKAHNKNRIMAMT
GLVLLTVFFSFLLSVFRSKAQGYPYSFLFKASFLDH

BO07490.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ostgamma-PA 330 CG7830-PA 1..330 1..330 1687 100 Plus