Clone Sequence Records
BO07490.3prime Sequence
838 bp (828 high quality bases) assembled on 2006-01-06
> BO07490.3prime
ATGGTCTAGAAAGCTTGCTTTGAACAAGAAACTATAGGGATAACCCTGCG
CCTTCGAACGAAAAACGGACAACAGGAAGGAGAAGAACACGGTGAGGAGC
ACCAAACCAGTCATCGCCATTATCCTGTTCTTGTTGTGAGCCTTTGGTGT
TCCCGATTCAATCAGCAGAATCATGCCCAGCACAATCATGGCATTCAGGA
ACATGACGATATAGGTCTCCACCACCAGCTGGCCCTGCGAGGAGCCATGG
ATGTAGGCCACGCCACCATTTTGCGACTTGTGGACCAGCGGTGGTCCACG
GATATGATTCCACATTTGACCCGAGATCATGGCGAAGCAGAAGAATACTG
CGATGGCACCCCACAGATTCTTGTTGTACAAGAACTCCAAGTTATTTCGC
CGAATGTAAAGAAAACTTCCCACCAGGGCCACCAATGTGATCATGGCCAC
GGTGCCAGAATAGTTTGGTGGACGGAAAATGCGAATGGTGATGTCCGTTC
GCTCGGCAACGAATTTCGCAATAGAATCGGCGGCGAAGCCGACGCGATGG
ATATCCATGGTGTCAGCTCCCTTTGGCTTGCCCTTGGCCGGGAAATGCAT
GAACACCGGGGCGGTGTTCAGGCGCAGAAGTTGGAAAACCTCGGAGCCGT
CATCGAAATCCACCATAGCAAAGAAGAGTTTGTTGGAGTAAGTCGAGGAG
AAGCGGTAGGAGTTGGCCACGATGGCGAACTCGTCGTGGGCGTGCCTACA
GATCTGGCATTGTCTCGATGGAGCCAATGCGGTGAGCATTACGATCATCG
AGTAATTCCGTGGTGCACTCTTCACATACTCCCGAAAC
BO07490.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7830-PA | 993 | CG7830-RA | 171..990 | 838..19 | 4100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ostgamma-RA | 1245 | CG7830-RA | 294..1113 | 838..19 | 4100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8307147..8307790 | 195..838 | 3220 | 100 | Plus |
2L | 23513712 | 2L | 8306906..8307068 | 32..194 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:49:07 has no hits.
BO07490.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:17 Download gff for
BO07490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7830-PA | 171..993 | 18..838 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:10 Download gff for
BO07490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7830-PA | 171..993 | 18..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:49 Download gff for
BO07490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ostgamma-RA | 294..1113 | 19..838 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:24:47 Download gff for
BO07490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ostgamma-RA | 294..1113 | 19..838 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:24:47 Download gff for
BO07490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8306906..8307068 | 32..194 | 100 | <- | Plus |
2L | 8307147..8307790 | 195..838 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:49 Download gff for
BO07490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8306906..8307068 | 32..194 | 100 | <- | Plus |
arm_2L | 8307147..8307790 | 195..838 | 100 | | Plus |
BO07490.5prime Sequence
876 bp (763 high quality bases) assembled on 2006-01-06
> BO07490.5prime
GAAGTTATCAGTCGACATGAGACTGCTGCACAAGACGCTGCTCAGCGGTC
TGCTGGTAGTGGCGTTATTCGCTATTTACGCAGCCGCGCAATCAAAATCG
AAGACGGGACTCTCGCTGTCGGAAAAAGTACAAAACCTGGTGGACATGAA
CGCCAAAAAGCCGCTGCTCCGCTTCAATGGACCCAAGTTTCGGGAGTATG
TGAAGAGTGCACCACGGAATTACTCGATGATCGTAATGCTCACCGCATTG
GCTCCATCGAGACAATGCCAGATCTGTAGGCACGCCCACGACGAGTTCGC
CATCGTGGCCAACTCCTACCGCTTCTCCTCGACTTACTCCAACAAACTCT
TCTTTGCTATGGTGGATTTCGATGACGGCTCCGAGGTTTTCCAACTTCTG
CGCCTGAACACCGCCCCGGTGTTCATGCATTTCCCGGCCAAGGGCAAGCC
AAAGGGAGCTGACACCATGGATATCCATCGCGTCGGCTTCGCCGCCGATT
CTATTGCGAAATTCGTTGCCGAGCGAACGGACATCACCATTCGCATTTTC
CGTCCACCAAACTATTCTGGCACCGTGGCCATGATCACATTGGTGGCCCT
GGTGGGAAGTTTTCTTTACATTCGGCGAAATAACTTGGAGTTCTTGTACA
ACAAGAATCTGTGGGGTGCCATCGCAGTATTCTTCTGCTTCGCCATGATC
TCGGGTCAAATGTGGAATCATATCCGTGGACCACCGCTGGTCCACAAGTC
GCAAAATGGTGGCGTGGCCTACATCCATGGCTCCTCGCAGGGCCAGCTGG
TGGTGGAGACCTATATCGTCATGTTCCTGAATGCCATGATTGTGCTGGGC
ATGATTCTGCTGATTGAATCGGGAAC
BO07490.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7830-PA | 993 | CG7830-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:33:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ostgamma-RA | 1245 | CG7830-RA | 124..983 | 17..876 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8307147..8307875 | 830..102 | 3645 | 100 | Minus |
2L | 23513712 | 2L | 8307983..8308069 | 103..17 | 435 | 100 | Minus |
2L | 23513712 | 2L | 8307023..8307068 | 876..831 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:33:17 has no hits.
BO07490.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:18 Download gff for
BO07490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7830-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:11 Download gff for
BO07490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7830-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:19 Download gff for
BO07490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ostgamma-RA | 122..983 | 14..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:32:31 Download gff for
BO07490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ostgamma-RA | 122..983 | 14..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:32:31 Download gff for
BO07490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8307023..8307068 | 831..876 | 100 | <- | Minus |
2L | 8307147..8307873 | 104..830 | 100 | <- | Minus |
2L | 8307983..8308071 | 14..103 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:19 Download gff for
BO07490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8307023..8307068 | 831..876 | 100 | <- | Minus |
arm_2L | 8307147..8307873 | 104..830 | 100 | <- | Minus |
arm_2L | 8307983..8308071 | 14..103 | 98 | | Minus |
BO07490.complete Sequence
1024 bp (1024 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630811
> BO07490.complete
GAAGTTATCAGTCGACATGAGACTGCTGCACAAGACGCTGCTCAGCGGTC
TGCTGGTAGTGGCGTTATTCGCTATTTACGCAGCCGCGCAATCAAAATCG
AAGACGGGACTCTCGCTGTCGGAAAAAGTACAAAACCTGGTGGACATGAA
CGCCAAAAAGCCGCTGCTCCGCTTCAATGGACCCAAGTTTCGGGAGTATG
TGAAGAGTGCACCACGGAATTACTCGATGATCGTAATGCTCACCGCATTG
GCTCCATCGAGACAATGCCAGATCTGTAGGCACGCCCACGACGAGTTCGC
CATCGTGGCCAACTCCTACCGCTTCTCCTCGACTTACTCCAACAAACTCT
TCTTTGCTATGGTGGATTTCGATGACGGCTCCGAGGTTTTCCAACTTCTG
CGCCTGAACACCGCCCCGGTGTTCATGCATTTCCCGGCCAAGGGCAAGCC
AAAGGGAGCTGACACCATGGATATCCATCGCGTCGGCTTCGCCGCCGATT
CTATTGCGAAATTCGTTGCCGAGCGAACGGACATCACCATTCGCATTTTC
CGTCCACCAAACTATTCTGGCACCGTGGCCATGATCACATTGGTGGCCCT
GGTGGGAAGTTTTCTTTACATTCGGCGAAATAACTTGGAGTTCTTGTACA
ACAAGAATCTGTGGGGTGCCATCGCAGTATTCTTCTGCTTCGCCATGATC
TCGGGTCAAATGTGGAATCATATCCGTGGACCACCGCTGGTCCACAAGTC
GCAAAATGGTGGCGTGGCCTACATCCATGGCTCCTCGCAGGGCCAGCTGG
TGGTGGAGACCTATATCGTCATGTTCCTGAATGCCATGATTGTGCTGGGC
ATGATTCTGCTGATTGAATCGGGAACACCAAAGGCTCACAACAAGAACAG
GATAATGGCGATGACTGGTTTGGTGCTCCTCACCGTGTTCTTCTCCTTCC
TGTTGTCCGTTTTTCGTTCGAAGGCGCAGGGTTATCCCTATAGTTTCTTG
TTCAAAGCAAGCTTTCTAGACCAT
BO07490.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ostgamma-RA | 993 | CG7830-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ostgamma-RA | 1245 | CG7830-RA | 124..1113 | 17..1006 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8307147..8307875 | 830..102 | 3645 | 100 | Minus |
2L | 23513712 | 2L | 8306906..8307068 | 993..831 | 815 | 100 | Minus |
2L | 23513712 | 2L | 8307983..8308069 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:45:29 has no hits.
BO07490.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:36 Download gff for
BO07490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7830-RA | 1..993 | 17..1007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:49 Download gff for
BO07490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7830-RA | 118..1109 | 14..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:56 Download gff for
BO07490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ostgamma-RA | 124..1113 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:36 Download gff for
BO07490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7830-RA | 118..1109 | 14..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:08 Download gff for
BO07490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ostgamma-RA | 124..1113 | 17..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:08 Download gff for
BO07490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8306906..8307068 | 831..993 | 100 | <- | Minus |
2L | 8307147..8307873 | 104..830 | 100 | <- | Minus |
2L | 8307983..8308069 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:56 Download gff for
BO07490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8306906..8307068 | 831..993 | 100 | <- | Minus |
arm_2L | 8307147..8307873 | 104..830 | 100 | <- | Minus |
arm_2L | 8307983..8308069 | 17..103 | 100 | | Minus |
BO07490.pep Sequence
Translation from 16 to 1024
> BO07490.pep
MRLLHKTLLSGLLVVALFAIYAAAQSKSKTGLSLSEKVQNLVDMNAKKPL
LRFNGPKFREYVKSAPRNYSMIVMLTALAPSRQCQICRHAHDEFAIVANS
YRFSSTYSNKLFFAMVDFDDGSEVFQLLRLNTAPVFMHFPAKGKPKGADT
MDIHRVGFAADSIAKFVAERTDITIRIFRPPNYSGTVAMITLVALVGSFL
YIRRNNLEFLYNKNLWGAIAVFFCFAMISGQMWNHIRGPPLVHKSQNGGV
AYIHGSSQGQLVVETYIVMFLNAMIVLGMILLIESGTPKAHNKNRIMAMT
GLVLLTVFFSFLLSVFRSKAQGYPYSFLFKASFLDH
BO07490.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ostgamma-PA | 330 | CG7830-PA | 1..330 | 1..330 | 1687 | 100 | Plus |