Clone BO07493 Report

Search the DGRC for BO07493

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptFmo-2-RA
Protein status:BO07493.pep: validated full length
Sequenced Size:1321

Clone Sequence Records

BO07493.3prime Sequence

925 bp (830 high quality bases) assembled on 2006-01-06

> BO07493.3prime
ATGGTCTAGAAAGCTTGCTACAATAGCTTCTCCGTTCTTCAAAAAGTTTT
CATCGTCCAAAATCGTATACTTGTTGCTCCTGTACGTGTCCAATTCAAAA
ATGTACTTCTTGCCGCAGTCCTTCATTAGCTTGTGGATAACTGGCTTGAT
GTTCTCGATGCCCGCGATACTGGCCAGTTCATTGTAGTAGACAAACTGTC
GCTCGCCCATCTGATGTGCTTTCTTCTGGTTGCGCACGCCGCAGCCCCAC
CGCTCTCCGATCTCCTGCTCCAGATCGGCAATCATCTGCTCCCGGGAGGG
AAACTTCCGCTGACCTGTGAAGAACTTCAGCGTGAAGCGCACCTGCATGT
CGAAGATGTGGGTGGGAATCACGTTGAAGGGCAGGCCCACAAAGGCCATG
GTCGGGTGGTTGATGTTGATGCAGTGCTTCCACAGTGGCTGCACGAAGTT
GTCTATCACCTGGACACCCACATCGGTGCTGAGGCAGGGGAATGTGTACT
TGTAGCCGGTGCAGAACATCACGTGGTCAAAGCTCTCCGTGCTGCCGTCC
GTGAAGACGGCTCCATCCTTTGTGAAGCGTTTCACATCCGGCTTCTGCGT
TACGTTGCCCATGAATGCTGTGTTAGGGGTCGTGGAAAGGTGGTGGCTTA
GGAAGACCTGCTTGGCAGCCAAGCGAACATGGTTGGTGATGTCCATGCCA
CTGGGGCCGGCGCCAATGATCAGCACACGCGCGTCTTTAAACTTATCTGC
CTTGCGGTAGAGGTGGCTGTGCATCTTGTTGCCCTCGAACAGATCTAATC
CCTCGACTTCCGGGAGGTCCGGTTCCGTGTAGTGCCCGTTGCAGACATAA
ACGAAGTCGTAGTAGACTGGGTCACAGGTATCCGTGCTGTGGTCCCATAC
GTAGACCTCCCAGTCGTCCAAGCGA

BO07493.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3174-PA 1290 Fmo-2-RA 381..1287 925..19 4535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-2-RA 1663 CG3174-RA 468..1374 925..19 4535 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6643003..6643547 196..740 2710 99.8 Plus
2R 25286936 2R 6642707..6642886 19..198 900 100 Plus
2R 25286936 2R 6644212..6644385 735..908 870 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:33:48 has no hits.

BO07493.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:23 Download gff for BO07493.3prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-PA 382..1290 16..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:18 Download gff for BO07493.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3174-PA 382..1290 16..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:24 Download gff for BO07493.3prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 469..1374 19..924 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:32:38 Download gff for BO07493.3prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 469..1374 19..924 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:32:38 Download gff for BO07493.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6642707..6642883 19..195 100 <- Plus
2R 6643003..6643541 196..734 100 <- Plus
2R 6644212..6644383 735..906 100 <- Plus
2R 6644494..6644511 907..924 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:24 Download gff for BO07493.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2530212..2530388 19..195 100 <- Plus
arm_2R 2530508..2531046 196..734 100 <- Plus
arm_2R 2531717..2531888 735..906 100 <- Plus
arm_2R 2531999..2532016 907..924 100   Plus

BO07493.5prime Sequence

889 bp (866 high quality bases) assembled on 2006-01-06

> BO07493.5prime
GAAGTTATCAGTCGACATGATCAAAACTTCAGTGGACAAGCGTCGTGTTT
GCGTAATAGGAGCTGGAACAGCGGGGTTGTGCGCGCTGAAGAACTCCCTG
GAAGCGGGTCTGGATGCGGTGGCCTACGAACGAGGCACCGAAATCGGAGG
AACATGGATTTTCTCCGAGGAAATGCCCAAGGACGAGTACGACGAGGTGC
ACAGCAGCATGTACGAAGGCCTGCGCACCAATCTTCCAAAGGAGGTCATG
GGCTATCCGGACTACTCGTACCCCGACGATATCACCGAGTCTTTCATCAC
CTCCAACCAGGTGCTAGAATTTCTGCGCTCCTACGCGGAACACTTCAAGC
TAAAGGCCCACATCAAGCTCCAGCACGAGGTGATAAGAGTGCGTCCTCGC
TTGGACGACTGGGAGGTCTACGTATGGGACCACAGCACGGATACCTGTGA
CCCAGTCTACTACGACTTCGTTTATGTCTGCAACGGGCACTACACGGAAC
CGGACCTCCCGGAAGTCGAGGGATTAGATCTGTTCGAGGGCAACAAGATG
CACAGCCACCTCTACCGCAAGGCAGATAAGTTTAAAGACGCGCGTGTGCT
GATCATTGGCGCCGGCCCCAGTGGCATGGACATCACCAACCATGTTCGCT
TGGCTGCCAAGCAGGTCTTCCTAAGCCACCACCTTTCCACGACCCCTAAC
ACAGCATTCATGGGCAACGTAACGCAGAAGCCGGATGTGAAACGCTTCAC
AAAGGATGGAGCCGTCTTCACGGACGGCAGCACGGAGAGCTTTGACCACG
TGATGTTCTGCACCGGCTACAAGTACACATTCCCCTGCCTCAGCACCGAT
GTGGGTGTCCAGGTGATAGACAACTTCGTGCAGCCACTG

BO07493.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3174-PA 1290 Fmo-2-RA 1..873 17..889 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-2-RA 1663 CG3174-RA 88..960 17..889 4365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6643240..6643547 889..582 1525 99.7 Minus
2R 25286936 2R 6644492..6644684 417..225 965 100 Minus
2R 25286936 2R 6644212..6644385 587..414 870 100 Minus
2R 25286936 2R 6644742..6644906 225..61 825 100 Minus
2R 25286936 2R 6644966..6645011 62..17 230 100 Minus
Blast to na_te.dros performed on 2015-02-09 19:35:54 has no hits.

BO07493.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:24 Download gff for BO07493.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-PA 1..873 17..889 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:20 Download gff for BO07493.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3174-PA 1..873 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:09:21 Download gff for BO07493.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 88..960 17..889 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:27 Download gff for BO07493.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 88..960 17..889 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:27 Download gff for BO07493.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6643240..6643541 588..889 100 <- Minus
2R 6644212..6644383 416..587 100 <- Minus
2R 6644494..6644683 226..415 100 <- Minus
2R 6644742..6644904 63..225 100 <- Minus
2R 6644966..6645011 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:09:21 Download gff for BO07493.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2530745..2531046 588..889 100 <- Minus
arm_2R 2531717..2531888 416..587 100 <- Minus
arm_2R 2531999..2532188 226..415 100 <- Minus
arm_2R 2532247..2532409 63..225 100 <- Minus
arm_2R 2532471..2532516 17..62 100   Minus

BO07493.complete Sequence

1321 bp (1321 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630813

> BO07493.complete
GAAGTTATCAGTCGACATGATCAAAACTTCAGTGGACAAGCGTCGTGTTT
GCGTAATAGGAGCTGGAACAGCGGGGTTGTGCGCGCTGAAGAACTCCCTG
GAAGCGGGTCTGGATGCGGTGGCCTACGAACGAGGCACCGAAATCGGAGG
AACATGGATTTTCTCCGAGGAAATGCCCAAGGACGAGTACGACGAGGTGC
ACAGCAGCATGTACGAAGGCCTGCGCACCAATCTTCCAAAGGAGGTCATG
GGCTATCCGGACTACTCGTACCCCGACGATATCACCGAGTCTTTCATCAC
CTCCAACCAGGTGCTAGAATTTCTGCGCTCCTACGCGGAACACTTCAAGC
TAAAGGCCCACATCAAGCTCCAGCACGAGGTGATAAGAGTGCGTCCTCGC
TTGGACGACTGGGAGGTCTACGTATGGGACCACAGCACGGATACCTGTGA
CCCAGTCTACTACGACTTCGTTTATGTCTGCAACGGGCACTACACGGAAC
CGGACCTCCCGGAAGTCGAGGGATTAGATCTGTTCGAGGGCAACAAGATG
CACAGCCACCTCTACCGCAAGGCAGATAAGTTTAAAGACGCGCGTGTGCT
GATCATTGGCGCCGGCCCCAGTGGCATGGACATCACCAACCATGTTCGCT
TGGCTGCCAAGCAGGTCTTCCTAAGCCACCACCTTTCCACGACCCCTAAC
ACAGCATTCATGGGCAACGTAACGCAGAAGCCGGATGTGAAACGCTTCAC
AAAGGATGGAGCCGTCTTCACGGACGGCAGCACGGAGAGCTTTGACCACG
TGATGTTCTGCACCGGCTACAAGTACACATTCCCCTGCCTCAGCACCGAT
GTGGGTGTCCAGGTGATAGACAACTTCGTGCAGCCACTGTGGAAGCACTG
CATCAACATCAACCACCCGACCATGGCCTTTGTGGGCCTGCCCTTCAACG
TGATTCCCACCCACATCTTCGACATGCAGGTGCGCTTCACGCTGAAGTTC
TTCACAGGTCAGCGGAAGTTTCCCTCCCGGGAGCAGATGATTGCCGATCT
GGAGCAGGAGATCGGAGAGCGGTGGGGCTGCGGCGTGCGCAACCAGAAGA
AAGCACATCAGATGGGCGAGCGACAGTTTGTCTACTACAATGAACTGGCC
AGTATCGCGGGCATCGAGAACATCAAGCCAGTTATCCACAAGCTAATGAA
GGACTGCGGCAAGAAGTACATTTTTGAATTGGACACGTACAGGAGCAACA
AGTATACGATTTTGGACGATGAAAACTTTTTGAAGAACGGAGAAGCTATT
GTAGCAAGCTTTCTAGACCAT

BO07493.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-2-RA 1290 CG3174-PA 1..1287 17..1303 6435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-2-RA 1663 CG3174-RA 88..1374 17..1303 6435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6643003..6643547 1126..582 2710 99.8 Minus
2R 25286936 2R 6644492..6644684 417..225 965 100 Minus
2R 25286936 2R 6642707..6642886 1303..1124 900 100 Minus
2R 25286936 2R 6644212..6644385 587..414 870 100 Minus
2R 25286936 2R 6644742..6644906 225..61 825 100 Minus
2R 25286936 2R 6644966..6645011 62..17 230 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:40:24 has no hits.

BO07493.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:01 Download gff for BO07493.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 1..1290 17..1306 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:55 Download gff for BO07493.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 70..1356 17..1303 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:44 Download gff for BO07493.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 88..1374 17..1305 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:01 Download gff for BO07493.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 70..1356 17..1303 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:57 Download gff for BO07493.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 88..1374 17..1305 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:57 Download gff for BO07493.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6644494..6644683 226..415 100 <- Minus
2R 6644742..6644904 63..225 100 <- Minus
2R 6644966..6645011 17..62 100   Minus
2R 6642704..6642883 1127..1305 98 <- Minus
2R 6643003..6643541 588..1126 100 <- Minus
2R 6644212..6644383 416..587 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:44 Download gff for BO07493.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2531717..2531888 416..587 100 <- Minus
arm_2R 2532471..2532516 17..62 100   Minus
arm_2R 2530209..2530388 1127..1305 98 <- Minus
arm_2R 2530508..2531046 588..1126 100 <- Minus
arm_2R 2531999..2532188 226..415 100 <- Minus
arm_2R 2532247..2532409 63..225 100 <- Minus

BO07493.pep Sequence

Translation from 16 to 1321

> BO07493.pep
MIKTSVDKRRVCVIGAGTAGLCALKNSLEAGLDAVAYERGTEIGGTWIFS
EEMPKDEYDEVHSSMYEGLRTNLPKEVMGYPDYSYPDDITESFITSNQVL
EFLRSYAEHFKLKAHIKLQHEVIRVRPRLDDWEVYVWDHSTDTCDPVYYD
FVYVCNGHYTEPDLPEVEGLDLFEGNKMHSHLYRKADKFKDARVLIIGAG
PSGMDITNHVRLAAKQVFLSHHLSTTPNTAFMGNVTQKPDVKRFTKDGAV
FTDGSTESFDHVMFCTGYKYTFPCLSTDVGVQVIDNFVQPLWKHCININH
PTMAFVGLPFNVIPTHIFDMQVRFTLKFFTGQRKFPSREQMIADLEQEIG
ERWGCGVRNQKKAHQMGERQFVYYNELASIAGIENIKPVIHKLMKDCGKK
YIFELDTYRSNKYTILDDENFLKNGEAIVASFLDH

BO07493.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-2-PA 429 CG3174-PA 1..429 1..429 2312 100 Plus
Fmo-1-PA 416 CG3006-PA 4..414 11..423 969 44.1 Plus