Clone Sequence Records
BO07493.3prime Sequence
925 bp (830 high quality bases) assembled on 2006-01-06
> BO07493.3prime
ATGGTCTAGAAAGCTTGCTACAATAGCTTCTCCGTTCTTCAAAAAGTTTT
CATCGTCCAAAATCGTATACTTGTTGCTCCTGTACGTGTCCAATTCAAAA
ATGTACTTCTTGCCGCAGTCCTTCATTAGCTTGTGGATAACTGGCTTGAT
GTTCTCGATGCCCGCGATACTGGCCAGTTCATTGTAGTAGACAAACTGTC
GCTCGCCCATCTGATGTGCTTTCTTCTGGTTGCGCACGCCGCAGCCCCAC
CGCTCTCCGATCTCCTGCTCCAGATCGGCAATCATCTGCTCCCGGGAGGG
AAACTTCCGCTGACCTGTGAAGAACTTCAGCGTGAAGCGCACCTGCATGT
CGAAGATGTGGGTGGGAATCACGTTGAAGGGCAGGCCCACAAAGGCCATG
GTCGGGTGGTTGATGTTGATGCAGTGCTTCCACAGTGGCTGCACGAAGTT
GTCTATCACCTGGACACCCACATCGGTGCTGAGGCAGGGGAATGTGTACT
TGTAGCCGGTGCAGAACATCACGTGGTCAAAGCTCTCCGTGCTGCCGTCC
GTGAAGACGGCTCCATCCTTTGTGAAGCGTTTCACATCCGGCTTCTGCGT
TACGTTGCCCATGAATGCTGTGTTAGGGGTCGTGGAAAGGTGGTGGCTTA
GGAAGACCTGCTTGGCAGCCAAGCGAACATGGTTGGTGATGTCCATGCCA
CTGGGGCCGGCGCCAATGATCAGCACACGCGCGTCTTTAAACTTATCTGC
CTTGCGGTAGAGGTGGCTGTGCATCTTGTTGCCCTCGAACAGATCTAATC
CCTCGACTTCCGGGAGGTCCGGTTCCGTGTAGTGCCCGTTGCAGACATAA
ACGAAGTCGTAGTAGACTGGGTCACAGGTATCCGTGCTGTGGTCCCATAC
GTAGACCTCCCAGTCGTCCAAGCGA
BO07493.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3174-PA | 1290 | Fmo-2-RA | 381..1287 | 925..19 | 4535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmo-2-RA | 1663 | CG3174-RA | 468..1374 | 925..19 | 4535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:33:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6643003..6643547 | 196..740 | 2710 | 99.8 | Plus |
2R | 25286936 | 2R | 6642707..6642886 | 19..198 | 900 | 100 | Plus |
2R | 25286936 | 2R | 6644212..6644385 | 735..908 | 870 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:33:48 has no hits.
BO07493.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:23 Download gff for
BO07493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-2-PA | 382..1290 | 16..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:18 Download gff for
BO07493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3174-PA | 382..1290 | 16..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:24 Download gff for
BO07493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-2-RA | 469..1374 | 19..924 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:32:38 Download gff for
BO07493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-2-RA | 469..1374 | 19..924 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:32:38 Download gff for
BO07493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6642707..6642883 | 19..195 | 100 | <- | Plus |
2R | 6643003..6643541 | 196..734 | 100 | <- | Plus |
2R | 6644212..6644383 | 735..906 | 100 | <- | Plus |
2R | 6644494..6644511 | 907..924 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:24 Download gff for
BO07493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2530212..2530388 | 19..195 | 100 | <- | Plus |
arm_2R | 2530508..2531046 | 196..734 | 100 | <- | Plus |
arm_2R | 2531717..2531888 | 735..906 | 100 | <- | Plus |
arm_2R | 2531999..2532016 | 907..924 | 100 | | Plus |
BO07493.5prime Sequence
889 bp (866 high quality bases) assembled on 2006-01-06
> BO07493.5prime
GAAGTTATCAGTCGACATGATCAAAACTTCAGTGGACAAGCGTCGTGTTT
GCGTAATAGGAGCTGGAACAGCGGGGTTGTGCGCGCTGAAGAACTCCCTG
GAAGCGGGTCTGGATGCGGTGGCCTACGAACGAGGCACCGAAATCGGAGG
AACATGGATTTTCTCCGAGGAAATGCCCAAGGACGAGTACGACGAGGTGC
ACAGCAGCATGTACGAAGGCCTGCGCACCAATCTTCCAAAGGAGGTCATG
GGCTATCCGGACTACTCGTACCCCGACGATATCACCGAGTCTTTCATCAC
CTCCAACCAGGTGCTAGAATTTCTGCGCTCCTACGCGGAACACTTCAAGC
TAAAGGCCCACATCAAGCTCCAGCACGAGGTGATAAGAGTGCGTCCTCGC
TTGGACGACTGGGAGGTCTACGTATGGGACCACAGCACGGATACCTGTGA
CCCAGTCTACTACGACTTCGTTTATGTCTGCAACGGGCACTACACGGAAC
CGGACCTCCCGGAAGTCGAGGGATTAGATCTGTTCGAGGGCAACAAGATG
CACAGCCACCTCTACCGCAAGGCAGATAAGTTTAAAGACGCGCGTGTGCT
GATCATTGGCGCCGGCCCCAGTGGCATGGACATCACCAACCATGTTCGCT
TGGCTGCCAAGCAGGTCTTCCTAAGCCACCACCTTTCCACGACCCCTAAC
ACAGCATTCATGGGCAACGTAACGCAGAAGCCGGATGTGAAACGCTTCAC
AAAGGATGGAGCCGTCTTCACGGACGGCAGCACGGAGAGCTTTGACCACG
TGATGTTCTGCACCGGCTACAAGTACACATTCCCCTGCCTCAGCACCGAT
GTGGGTGTCCAGGTGATAGACAACTTCGTGCAGCCACTG
BO07493.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3174-PA | 1290 | Fmo-2-RA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:35:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmo-2-RA | 1663 | CG3174-RA | 88..960 | 17..889 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6643240..6643547 | 889..582 | 1525 | 99.7 | Minus |
2R | 25286936 | 2R | 6644492..6644684 | 417..225 | 965 | 100 | Minus |
2R | 25286936 | 2R | 6644212..6644385 | 587..414 | 870 | 100 | Minus |
2R | 25286936 | 2R | 6644742..6644906 | 225..61 | 825 | 100 | Minus |
2R | 25286936 | 2R | 6644966..6645011 | 62..17 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:35:54 has no hits.
BO07493.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:24 Download gff for
BO07493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-2-PA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:20 Download gff for
BO07493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3174-PA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:09:21 Download gff for
BO07493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-2-RA | 88..960 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:27 Download gff for
BO07493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-2-RA | 88..960 | 17..889 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:27 Download gff for
BO07493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6643240..6643541 | 588..889 | 100 | <- | Minus |
2R | 6644212..6644383 | 416..587 | 100 | <- | Minus |
2R | 6644494..6644683 | 226..415 | 100 | <- | Minus |
2R | 6644742..6644904 | 63..225 | 100 | <- | Minus |
2R | 6644966..6645011 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:09:21 Download gff for
BO07493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2530745..2531046 | 588..889 | 100 | <- | Minus |
arm_2R | 2531717..2531888 | 416..587 | 100 | <- | Minus |
arm_2R | 2531999..2532188 | 226..415 | 100 | <- | Minus |
arm_2R | 2532247..2532409 | 63..225 | 100 | <- | Minus |
arm_2R | 2532471..2532516 | 17..62 | 100 | | Minus |
BO07493.complete Sequence
1321 bp (1321 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630813
> BO07493.complete
GAAGTTATCAGTCGACATGATCAAAACTTCAGTGGACAAGCGTCGTGTTT
GCGTAATAGGAGCTGGAACAGCGGGGTTGTGCGCGCTGAAGAACTCCCTG
GAAGCGGGTCTGGATGCGGTGGCCTACGAACGAGGCACCGAAATCGGAGG
AACATGGATTTTCTCCGAGGAAATGCCCAAGGACGAGTACGACGAGGTGC
ACAGCAGCATGTACGAAGGCCTGCGCACCAATCTTCCAAAGGAGGTCATG
GGCTATCCGGACTACTCGTACCCCGACGATATCACCGAGTCTTTCATCAC
CTCCAACCAGGTGCTAGAATTTCTGCGCTCCTACGCGGAACACTTCAAGC
TAAAGGCCCACATCAAGCTCCAGCACGAGGTGATAAGAGTGCGTCCTCGC
TTGGACGACTGGGAGGTCTACGTATGGGACCACAGCACGGATACCTGTGA
CCCAGTCTACTACGACTTCGTTTATGTCTGCAACGGGCACTACACGGAAC
CGGACCTCCCGGAAGTCGAGGGATTAGATCTGTTCGAGGGCAACAAGATG
CACAGCCACCTCTACCGCAAGGCAGATAAGTTTAAAGACGCGCGTGTGCT
GATCATTGGCGCCGGCCCCAGTGGCATGGACATCACCAACCATGTTCGCT
TGGCTGCCAAGCAGGTCTTCCTAAGCCACCACCTTTCCACGACCCCTAAC
ACAGCATTCATGGGCAACGTAACGCAGAAGCCGGATGTGAAACGCTTCAC
AAAGGATGGAGCCGTCTTCACGGACGGCAGCACGGAGAGCTTTGACCACG
TGATGTTCTGCACCGGCTACAAGTACACATTCCCCTGCCTCAGCACCGAT
GTGGGTGTCCAGGTGATAGACAACTTCGTGCAGCCACTGTGGAAGCACTG
CATCAACATCAACCACCCGACCATGGCCTTTGTGGGCCTGCCCTTCAACG
TGATTCCCACCCACATCTTCGACATGCAGGTGCGCTTCACGCTGAAGTTC
TTCACAGGTCAGCGGAAGTTTCCCTCCCGGGAGCAGATGATTGCCGATCT
GGAGCAGGAGATCGGAGAGCGGTGGGGCTGCGGCGTGCGCAACCAGAAGA
AAGCACATCAGATGGGCGAGCGACAGTTTGTCTACTACAATGAACTGGCC
AGTATCGCGGGCATCGAGAACATCAAGCCAGTTATCCACAAGCTAATGAA
GGACTGCGGCAAGAAGTACATTTTTGAATTGGACACGTACAGGAGCAACA
AGTATACGATTTTGGACGATGAAAACTTTTTGAAGAACGGAGAAGCTATT
GTAGCAAGCTTTCTAGACCAT
BO07493.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmo-2-RA | 1290 | CG3174-PA | 1..1287 | 17..1303 | 6435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmo-2-RA | 1663 | CG3174-RA | 88..1374 | 17..1303 | 6435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6643003..6643547 | 1126..582 | 2710 | 99.8 | Minus |
2R | 25286936 | 2R | 6644492..6644684 | 417..225 | 965 | 100 | Minus |
2R | 25286936 | 2R | 6642707..6642886 | 1303..1124 | 900 | 100 | Minus |
2R | 25286936 | 2R | 6644212..6644385 | 587..414 | 870 | 100 | Minus |
2R | 25286936 | 2R | 6644742..6644906 | 225..61 | 825 | 100 | Minus |
2R | 25286936 | 2R | 6644966..6645011 | 62..17 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:40:24 has no hits.
BO07493.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:01 Download gff for
BO07493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-2-RA | 1..1290 | 17..1306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:55 Download gff for
BO07493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-2-RA | 70..1356 | 17..1303 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:44 Download gff for
BO07493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-2-RA | 88..1374 | 17..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:01 Download gff for
BO07493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-2-RA | 70..1356 | 17..1303 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:57 Download gff for
BO07493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-2-RA | 88..1374 | 17..1305 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:57 Download gff for
BO07493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6644494..6644683 | 226..415 | 100 | <- | Minus |
2R | 6644742..6644904 | 63..225 | 100 | <- | Minus |
2R | 6644966..6645011 | 17..62 | 100 | | Minus |
2R | 6642704..6642883 | 1127..1305 | 98 | <- | Minus |
2R | 6643003..6643541 | 588..1126 | 100 | <- | Minus |
2R | 6644212..6644383 | 416..587 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:44 Download gff for
BO07493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2531717..2531888 | 416..587 | 100 | <- | Minus |
arm_2R | 2532471..2532516 | 17..62 | 100 | | Minus |
arm_2R | 2530209..2530388 | 1127..1305 | 98 | <- | Minus |
arm_2R | 2530508..2531046 | 588..1126 | 100 | <- | Minus |
arm_2R | 2531999..2532188 | 226..415 | 100 | <- | Minus |
arm_2R | 2532247..2532409 | 63..225 | 100 | <- | Minus |
BO07493.pep Sequence
Translation from 16 to 1321
> BO07493.pep
MIKTSVDKRRVCVIGAGTAGLCALKNSLEAGLDAVAYERGTEIGGTWIFS
EEMPKDEYDEVHSSMYEGLRTNLPKEVMGYPDYSYPDDITESFITSNQVL
EFLRSYAEHFKLKAHIKLQHEVIRVRPRLDDWEVYVWDHSTDTCDPVYYD
FVYVCNGHYTEPDLPEVEGLDLFEGNKMHSHLYRKADKFKDARVLIIGAG
PSGMDITNHVRLAAKQVFLSHHLSTTPNTAFMGNVTQKPDVKRFTKDGAV
FTDGSTESFDHVMFCTGYKYTFPCLSTDVGVQVIDNFVQPLWKHCININH
PTMAFVGLPFNVIPTHIFDMQVRFTLKFFTGQRKFPSREQMIADLEQEIG
ERWGCGVRNQKKAHQMGERQFVYYNELASIAGIENIKPVIHKLMKDCGKK
YIFELDTYRSNKYTILDDENFLKNGEAIVASFLDH
BO07493.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmo-2-PA | 429 | CG3174-PA | 1..429 | 1..429 | 2312 | 100 | Plus |
Fmo-1-PA | 416 | CG3006-PA | 4..414 | 11..423 | 969 | 44.1 | Plus |