Clone Sequence Records
BO07495.3prime Sequence
920 bp (766 high quality bases) assembled on 2006-01-06
> BO07495.3prime
ATGGTCTAGAAAGCTTGCGACCTCAGTGGGCAAACTCTGGCTCTGGCAGC
CCGCCTGCAGTTTCTTGGAGCTGCGGAAGAACATGTCGAAGAGCCTGGCG
CGCCGATTCTGGAACTTTTGGGGCATGGTTGGTGTTATAGCTATGTGCTC
AACGATGGTGATGCCCCTCTGCAGCTTGGGGCGCTGCGGTCGTGTGGGCG
GTGGAGCAACTGCCACAGTAGGTGGTGGTGTTGCCGGTGGCTGCTCATCG
GAGTCCGCTGAGCCCCTGGCGCCACCGAAATTGATGATGGTGCTGCAGCT
GCTGTTGGGCCTTAACGTCAAGGTCGTATGCACCGGCACTTGACTGACCA
GGGAACTCTGGGGGGTGAGATACTTGCAGCTGTTGCTGCTGTACTGCGAC
AACTTGCTGCTGTTGCGCTGCAATTGTGCACCACTTGCAGCAGGACCTGC
GGTGCCATTGGTCTTTACACTGCTGCTGCAGTTGCGCTGCAGGCCCGACG
ACGAATCCAGACCAAACAGCCGCTTGACTCCTCGCCTCACCCTCTTGTTC
CTGTAGGCGAAGATGAATGGCGAACTGAGATTGGCCAGCAGGATCATGAA
GATGGCCAGCTGGGAGGATCCGCCAAAGTTAGCAGCCGACAGTCGCGATT
GCAGGAGTACCAGCAGTCCGAAGGGCAGGTACGAGACCACAAACATCACC
ACCACCAGGATGCTGATGCGGGCTGCTCTCGACTCCTCACGGTATTTGAA
TAGCGAACTGGCGTTGCTCAAACGGTGTCGCAAGGAGCTCATGTAACTCA
GAGCCTTGGGGGAGGCATGAATGGCGGGTATCTGGAGGGCGTGNCCGTGT
TGCTGGTGGCGCGGCGAACTGAAGTGCGGATGATGTTGCTGGTGGTGATG
ATGCTGTTGCTGCTGATGTT
BO07495.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12290-PA | 2397 | CG12290-RA | 1493..2394 | 920..19 | 4491 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12290-RB | 4453 | CG12290-RB | 1950..2851 | 920..19 | 4499 | 99.9 | Minus |
CG12290-RA | 3082 | CG12290-RA | 1950..2851 | 920..19 | 4499 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:58:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26232197..26233098 | 920..19 | 4499 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-11 21:58:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6834 | 920..842 | 170 | 70.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2395 | 920..848 | 165 | 72.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6843 | 920..848 | 159 | 72.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2449..2560 | 920..812 | 157 | 64.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6804 | 920..848 | 157 | 71.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6879 | 920..848 | 157 | 71.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2422 | 920..848 | 150 | 71.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6870 | 920..848 | 147 | 69.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6789 | 919..848 | 143 | 69.9 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1122..1163 | 920..879 | 138 | 81 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1579 | 915..875 | 133 | 80.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2494..2543 | 920..871 | 133 | 74 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..6946 | 920..822 | 132 | 62.7 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1089..1158 | 920..848 | 132 | 68.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2419 | 920..875 | 131 | 76.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2851 | 920..848 | 130 | 67.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2623..2664 | 920..879 | 129 | 78.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2482 | 920..842 | 128 | 65.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1110..1164 | 920..867 | 128 | 72.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2368..2413 | 920..875 | 122 | 73.9 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7954..7988 | 916..882 | 112 | 80 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 9398..9432 | 916..882 | 112 | 80 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6828..6901 | 920..850 | 110 | 66.7 | Minus |
BO07495.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:25 Download gff for
BO07495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12290-PA | 1493..2397 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:22 Download gff for
BO07495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12290-PA | 1493..2397 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:40 Download gff for
BO07495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12290-RA | 1950..2854 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:49:56 Download gff for
BO07495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12290-RA | 1950..2854 | 15..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:49:56 Download gff for
BO07495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26232197..26233101 | 15..920 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:40 Download gff for
BO07495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22057919..22058823 | 15..920 | 99 | | Minus |
BO07495.5prime Sequence
894 bp (785 high quality bases) assembled on 2006-01-06
> BO07495.5prime
GAAGTTATCAGTCGACATGGCCATAGACCTCCTGATCCTGGCCCTGCTGC
TCGTCTCGTTCCTGATCAACCTGCTGGCGCTGTGTGCCTTTTGGATAACG
CCTGGCTTGAGGACCACCGCCAATCGCTTTACGATCAACCTGCTGGCCAT
CAATCTCATTGGTTGCTGCATCTTGGCCCCCACTTTGTTCCTGGGACTGC
CGGGAAAGTCTGCGGAGGCATCCACTTCCAACGCCGAGACCCTGGAGTTC
TTCTCGAAGCCGGGAAACCATCAGGTGATACTTCGTCGCAATGGCCAGCT
GGTGGAACAGGACGGCGTGGTGGTGCGAAGGAACATCAGCGAAAACGGCG
ATACGGTGGAGACCTTCTTCAAGTGCAATGCCACCTACTGTCGCGAGTTG
ACCATCGATGAGCGCGGAGATGGTGGCTTTGTCATCACGGAAACCGAGAC
ACACGAAGAGAATCTCTCGGCCTTTGAGAGCTTACCCACGGAGGCTCCCA
TTTTGCCGCCCGTCCAACTGAGATGTTGGTCCATAGACATGACTGCTGCG
CTGGGAGCTCTGGCAGTACTGCTCGTGGTGGGGGACACCTGGTGTGCCGT
TACGGATCCCCTGCGCTACCACAGTCGCATTTCGGGCGTGAAAACCTGGA
TCTTCATAGCACTCACCTGGGTGGTGGGCATACTCTTTGGAGCCCTTTCC
GCCTTCCGAGTTTTGGACTTTGAGGCGGACGCCCTGTTCAGCAGACAACG
CCGCCTGGCAGTCACGTACTTCAACATCAGCAGCACCAATAGTATTTTCG
GAGTGGTGTACGCCAGTGTCTACTTCATCGTGATCATCCCTCTGCCCTTC
GGCTTCGTGTGCGGAATGTACTGGAGGATATTCAGTGAGGCGCG
BO07495.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12290-PA | 2397 | CG12290-RA | 1..878 | 17..894 | 4340 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12290-RB | 4453 | CG12290-RB | 458..1335 | 17..894 | 4360 | 99.8 | Plus |
CG12290-RA | 3082 | CG12290-RA | 458..1335 | 17..894 | 4360 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26230705..26231582 | 17..894 | 4360 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:50:51 has no hits.
BO07495.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:26 Download gff for
BO07495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12290-PA | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:23 Download gff for
BO07495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12290-PA | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:22:19 Download gff for
BO07495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12290-RA | 456..1335 | 14..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:21:21 Download gff for
BO07495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12290-RA | 456..1335 | 14..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:21:21 Download gff for
BO07495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26230703..26231582 | 14..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:22:19 Download gff for
BO07495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22056425..22057304 | 14..894 | 99 | | Plus |
BO07495.complete Sequence
2428 bp (2428 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630814
> BO07495.complete
GAAGTTATCAGTCGACATGGCCATAGACCTCCTGATCCTGGCCCTGCTGC
TCGTCTCGTTCCTGATCAACCTGCTGGCGCTGTGTGCCTTTTGGATAACG
CCTGGCTTGAGGACCACCGCCAATCGCTTTACGATCAACCTGCTGGCCAT
CAATCTCATTGGTTGCTGCATCTTGGCCCCCACTTTGTTCCTGGGACTGC
CGGGAAAGTCTGCGGAGGCATCCACTTCCAACGCCGAGACCCTGGAGTTC
TTCTCGAAGCCGGGAAACCATCAGGTGATACTTCGTCGCAATGGCCAGCT
GGTGGAACAGGACGGCGTGGTGGTGCGAAGGAACATCAGCGAAAACGGCG
ATACGGTGGAGACCTTCTTCAAGTGCAATGCCACCTACTGTCGCGAGTTG
ACCATCGATGAGCGCGGAGATGGTGGCTTTGTCATCACGGAAACCGAGAC
ACACGAAGAGAATCTCTCGGCCTTTGAGAGCTTACCCACGGAGGCTCCCA
TTTTGCCGCCCGTCCAACTGAGATGTTGGTCCATAGACATGACTGCTGCG
CTGGGAGCTCTGGCAGTACTGCTCGTGGTGGGGGACACCTGGTGTGCCGT
TACGGATCCCCTGCGCTACCACAGTCGCATTTCGGGCGTGAAAACCTGGA
TCTTCATAGCACTCACCTGGGTGGTGGGCATACTCTTTGGAGCCCTTTCC
GCCTTCCGAGTTTTGGACTTTGAGGCGGACGCCCTGTTCAGCAGACAACG
CCGCCTGGCAGTCACGTACTTCAACATCAGCAGCACCAATAGTATTTTCG
GAGTGGTGTACGCCAGTGTCTACTTCATCGTGATCATCCTCCTGCCCTTC
GGCTTCGTGTGCGGAATGTACTGGAGGATATTCAGTGAGGCGCGCGGAAA
TGGGCTGCGCATGCGCCAGAATGGCTCTTCGCCGCTGCTGCAGAGCGCCT
TGAATCTGACGGCTGGCCAGCAGGCGGCTCAAGCCAACCAGTTCTCCAAT
AGCTTGTGTGTTCATCGGCATTCCATATCCTCGGCCAGTTCGCATGGCGG
CAACAGCAGCTTGGGCTTGGGCGGTCTGCAAATGCAAATTGATCAGCGCC
AACAGCCGAGGAGTTCGCCCAGTTGTCTCCGTCGGGACTCGGCCGCGAAA
GTACTTTTGCCCACCATCTCGGATGATGGTGGCTCAGATGCGGAAAGTGG
AGCCGGAGTTCAACTGATGCCCGTACAGGAGCACTCACTGTCAGATAGAA
ATCAGAACATTATGCTTACTCTGCAAACAGCCAGTGGTGAAATAAAGAGG
AACTACTCCGCCAGACAGCTGCCCCTGTTGGGCACTTCTTCGCAGGATCT
GAGGGAGACTAATCGTCTGCAGGGCATACGCCAGGTGCACAGTTCGCCCA
ATCTCCACAAGTACACGGAACTGCGCCAGGACTCGCTCAGTGAGGAGTGT
GGTTCTCCGCATCTTTTGGGTCACGCCCAGCGGCAGCAGCAGCAGCAATT
GCACCTGCAACATCAGCAGCAACAGCATCATCACCACCAGCAACATCATC
CGCACTTCAGTTCGCCGCGCCACCAGCAACACGGCCACGCCCTCCAGATA
CCCGCCATTCATGCCTCCCCCAAGGCTCTGAGTTACATGAGCTCCTTGCG
ACACCGTTTGAGCAACGCCAGTTCGCTATTCAAATACCGTGAGGAGTCGA
GAGCAGCCCGCATCAGCATCCTGGTGGTGGTGATGTTTGTGGTCTCGTAC
CTGCCCTTCGGACTGCTGGTACTCCTGCAATCGCGACTGTCGGCTGCTAA
CTTTGGCGGATCCTCCCAGCTGGCCATCTTCATGATCCTGCTGGCCAATC
TCAGTTCGCCATTCATCTTCGCCTACAGGAACAAGAGGGTGAGGCGAGGA
GTCAAGCGGCTGTTTGGTCTGGATTCGTCGTCGGGCCTGCAGCGCAACTG
CAGCAGCAGTGTAAAGACCAATGGCACCGCAGGTCCTGCTGCAAGTGGTG
CACAATTGCAGCGCAACAGCAGCAAGTTGTCGCAGTACAGCAGCAACAGC
TGCAAGTATCTCACCCCCCAGAGTTCCCTGGTCAGTCAAGTGCCGGTGCA
TACGACCTTGACGTTAAGGCCCAACAGCAGCTGCAGCACCATCATCAATT
TCGGTGGCGCCAGGGGCTCAGCGGACTCCGATGAGCAGCCACCGGCAACA
CCACCACCTACTGTGGCAGTTGCTCCACCGCCCACACGACCGCAGCGCCC
CAAGCTGCAGAGGGGCATCACCATCGTTGAGCACATAGCTATAACACCAA
CCATGCCCCAAAAGTTCCAGAATCGGCGCGCCAGGCTCTTCGACATGTTC
TTCCGCAGCTCCAAGAAACTGCAGGCGGGCTGCCAGAGCCAGAGTTTGCC
CACTGAGGTCGCAAGCTTTCTAGACCAT
BO07495.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12290-RB | 2397 | CG12290-PB | 1..2394 | 17..2410 | 11970 | 100 | Plus |
CG12290-RA | 2397 | CG12290-PA | 1..2394 | 17..2410 | 11970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12290-RB | 4453 | CG12290-RB | 458..2851 | 17..2410 | 11970 | 100 | Plus |
CG12290-RA | 3082 | CG12290-RA | 458..2851 | 17..2410 | 11970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26230705..26233098 | 17..2410 | 11970 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:21:28 has no hits.
BO07495.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:53 Download gff for
BO07495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12290-RA | 1..2397 | 17..2414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:54 Download gff for
BO07495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12290-RA | 452..2850 | 14..2414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:39 Download gff for
BO07495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12290-RA | 458..2851 | 17..2412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:53 Download gff for
BO07495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12290-RA | 452..2850 | 14..2414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:00 Download gff for
BO07495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12290-RA | 458..2851 | 17..2412 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:00 Download gff for
BO07495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26230705..26233098 | 17..2412 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:39 Download gff for
BO07495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22056427..22058820 | 17..2412 | 99 | | Plus |
BO07495.pep Sequence
Translation from 16 to 2428
> BO07495.pep
MAIDLLILALLLVSFLINLLALCAFWITPGLRTTANRFTINLLAINLIGC
CILAPTLFLGLPGKSAEASTSNAETLEFFSKPGNHQVILRRNGQLVEQDG
VVVRRNISENGDTVETFFKCNATYCRELTIDERGDGGFVITETETHEENL
SAFESLPTEAPILPPVQLRCWSIDMTAALGALAVLLVVGDTWCAVTDPLR
YHSRISGVKTWIFIALTWVVGILFGALSAFRVLDFEADALFSRQRRLAVT
YFNISSTNSIFGVVYASVYFIVIILLPFGFVCGMYWRIFSEARGNGLRMR
QNGSSPLLQSALNLTAGQQAAQANQFSNSLCVHRHSISSASSHGGNSSLG
LGGLQMQIDQRQQPRSSPSCLRRDSAAKVLLPTISDDGGSDAESGAGVQL
MPVQEHSLSDRNQNIMLTLQTASGEIKRNYSARQLPLLGTSSQDLRETNR
LQGIRQVHSSPNLHKYTELRQDSLSEECGSPHLLGHAQRQQQQQLHLQHQ
QQQHHHHQQHHPHFSSPRHQQHGHALQIPAIHASPKALSYMSSLRHRLSN
ASSLFKYREESRAARISILVVVMFVVSYLPFGLLVLLQSRLSAANFGGSS
QLAIFMILLANLSSPFIFAYRNKRVRRGVKRLFGLDSSSGLQRNCSSSVK
TNGTAGPAASGAQLQRNSSKLSQYSSNSCKYLTPQSSLVSQVPVHTTLTL
RPNSSCSTIINFGGARGSADSDEQPPATPPPTVAVAPPPTRPQRPKLQRG
ITIVEHIAITPTMPQKFQNRRARLFDMFFRSSKKLQAGCQSQSLPTEVAS
FLDH
BO07495.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12290-PB | 798 | CG12290-PB | 1..798 | 1..798 | 4085 | 100 | Plus |
CG12290-PA | 798 | CG12290-PA | 1..798 | 1..798 | 4085 | 100 | Plus |