Clone BO07495 Report

Search the DGRC for BO07495

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG12290-RA
Protein status:BO07495.pep: validated full length
Sequenced Size:2428

Clone Sequence Records

BO07495.3prime Sequence

920 bp (766 high quality bases) assembled on 2006-01-06

> BO07495.3prime
ATGGTCTAGAAAGCTTGCGACCTCAGTGGGCAAACTCTGGCTCTGGCAGC
CCGCCTGCAGTTTCTTGGAGCTGCGGAAGAACATGTCGAAGAGCCTGGCG
CGCCGATTCTGGAACTTTTGGGGCATGGTTGGTGTTATAGCTATGTGCTC
AACGATGGTGATGCCCCTCTGCAGCTTGGGGCGCTGCGGTCGTGTGGGCG
GTGGAGCAACTGCCACAGTAGGTGGTGGTGTTGCCGGTGGCTGCTCATCG
GAGTCCGCTGAGCCCCTGGCGCCACCGAAATTGATGATGGTGCTGCAGCT
GCTGTTGGGCCTTAACGTCAAGGTCGTATGCACCGGCACTTGACTGACCA
GGGAACTCTGGGGGGTGAGATACTTGCAGCTGTTGCTGCTGTACTGCGAC
AACTTGCTGCTGTTGCGCTGCAATTGTGCACCACTTGCAGCAGGACCTGC
GGTGCCATTGGTCTTTACACTGCTGCTGCAGTTGCGCTGCAGGCCCGACG
ACGAATCCAGACCAAACAGCCGCTTGACTCCTCGCCTCACCCTCTTGTTC
CTGTAGGCGAAGATGAATGGCGAACTGAGATTGGCCAGCAGGATCATGAA
GATGGCCAGCTGGGAGGATCCGCCAAAGTTAGCAGCCGACAGTCGCGATT
GCAGGAGTACCAGCAGTCCGAAGGGCAGGTACGAGACCACAAACATCACC
ACCACCAGGATGCTGATGCGGGCTGCTCTCGACTCCTCACGGTATTTGAA
TAGCGAACTGGCGTTGCTCAAACGGTGTCGCAAGGAGCTCATGTAACTCA
GAGCCTTGGGGGAGGCATGAATGGCGGGTATCTGGAGGGCGTGNCCGTGT
TGCTGGTGGCGCGGCGAACTGAAGTGCGGATGATGTTGCTGGTGGTGATG
ATGCTGTTGCTGCTGATGTT

BO07495.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12290-PA 2397 CG12290-RA 1493..2394 920..19 4491 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12290-RB 4453 CG12290-RB 1950..2851 920..19 4499 99.9 Minus
CG12290-RA 3082 CG12290-RA 1950..2851 920..19 4499 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26232197..26233098 920..19 4499 99.9 Minus
Blast to na_te.dros performed 2015-02-11 21:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6834 920..842 170 70.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2320..2395 920..848 165 72.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6843 920..848 159 72.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2449..2560 920..812 157 64.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6804 920..848 157 71.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6807..6879 920..848 157 71.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2353..2422 920..848 150 71.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6795..6870 920..848 147 69.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6789 919..848 143 69.9 Minus
roo 9092 roo DM_ROO 9092bp 1122..1163 920..879 138 81 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1539..1579 915..875 133 80.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2494..2543 920..871 133 74 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6846..6946 920..822 132 62.7 Minus
roo 9092 roo DM_ROO 9092bp 1089..1158 920..848 132 68.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2419 920..875 131 76.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2851 920..848 130 67.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2623..2664 920..879 129 78.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2407..2482 920..842 128 65.8 Minus
roo 9092 roo DM_ROO 9092bp 1110..1164 920..867 128 72.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2368..2413 920..875 122 73.9 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7954..7988 916..882 112 80 Minus
TART-C 11124 TART-C TARTC 11124bp 9398..9432 916..882 112 80 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6828..6901 920..850 110 66.7 Minus

BO07495.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:25 Download gff for BO07495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12290-PA 1493..2397 15..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:22 Download gff for BO07495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12290-PA 1493..2397 15..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:40 Download gff for BO07495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 1950..2854 15..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:49:56 Download gff for BO07495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 1950..2854 15..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:49:56 Download gff for BO07495.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26232197..26233101 15..920 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:40 Download gff for BO07495.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22057919..22058823 15..920 99   Minus

BO07495.5prime Sequence

894 bp (785 high quality bases) assembled on 2006-01-06

> BO07495.5prime
GAAGTTATCAGTCGACATGGCCATAGACCTCCTGATCCTGGCCCTGCTGC
TCGTCTCGTTCCTGATCAACCTGCTGGCGCTGTGTGCCTTTTGGATAACG
CCTGGCTTGAGGACCACCGCCAATCGCTTTACGATCAACCTGCTGGCCAT
CAATCTCATTGGTTGCTGCATCTTGGCCCCCACTTTGTTCCTGGGACTGC
CGGGAAAGTCTGCGGAGGCATCCACTTCCAACGCCGAGACCCTGGAGTTC
TTCTCGAAGCCGGGAAACCATCAGGTGATACTTCGTCGCAATGGCCAGCT
GGTGGAACAGGACGGCGTGGTGGTGCGAAGGAACATCAGCGAAAACGGCG
ATACGGTGGAGACCTTCTTCAAGTGCAATGCCACCTACTGTCGCGAGTTG
ACCATCGATGAGCGCGGAGATGGTGGCTTTGTCATCACGGAAACCGAGAC
ACACGAAGAGAATCTCTCGGCCTTTGAGAGCTTACCCACGGAGGCTCCCA
TTTTGCCGCCCGTCCAACTGAGATGTTGGTCCATAGACATGACTGCTGCG
CTGGGAGCTCTGGCAGTACTGCTCGTGGTGGGGGACACCTGGTGTGCCGT
TACGGATCCCCTGCGCTACCACAGTCGCATTTCGGGCGTGAAAACCTGGA
TCTTCATAGCACTCACCTGGGTGGTGGGCATACTCTTTGGAGCCCTTTCC
GCCTTCCGAGTTTTGGACTTTGAGGCGGACGCCCTGTTCAGCAGACAACG
CCGCCTGGCAGTCACGTACTTCAACATCAGCAGCACCAATAGTATTTTCG
GAGTGGTGTACGCCAGTGTCTACTTCATCGTGATCATCCCTCTGCCCTTC
GGCTTCGTGTGCGGAATGTACTGGAGGATATTCAGTGAGGCGCG

BO07495.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12290-PA 2397 CG12290-RA 1..878 17..894 4340 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12290-RB 4453 CG12290-RB 458..1335 17..894 4360 99.8 Plus
CG12290-RA 3082 CG12290-RA 458..1335 17..894 4360 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26230705..26231582 17..894 4360 99.8 Plus
Blast to na_te.dros performed on 2015-02-11 02:50:51 has no hits.

BO07495.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:26 Download gff for BO07495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12290-PA 1..878 17..894 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:23 Download gff for BO07495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12290-PA 1..878 17..894 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:22:19 Download gff for BO07495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 456..1335 14..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:21:21 Download gff for BO07495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 456..1335 14..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:21:21 Download gff for BO07495.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26230703..26231582 14..894 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:22:19 Download gff for BO07495.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22056425..22057304 14..894 99   Plus

BO07495.complete Sequence

2428 bp (2428 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630814

> BO07495.complete
GAAGTTATCAGTCGACATGGCCATAGACCTCCTGATCCTGGCCCTGCTGC
TCGTCTCGTTCCTGATCAACCTGCTGGCGCTGTGTGCCTTTTGGATAACG
CCTGGCTTGAGGACCACCGCCAATCGCTTTACGATCAACCTGCTGGCCAT
CAATCTCATTGGTTGCTGCATCTTGGCCCCCACTTTGTTCCTGGGACTGC
CGGGAAAGTCTGCGGAGGCATCCACTTCCAACGCCGAGACCCTGGAGTTC
TTCTCGAAGCCGGGAAACCATCAGGTGATACTTCGTCGCAATGGCCAGCT
GGTGGAACAGGACGGCGTGGTGGTGCGAAGGAACATCAGCGAAAACGGCG
ATACGGTGGAGACCTTCTTCAAGTGCAATGCCACCTACTGTCGCGAGTTG
ACCATCGATGAGCGCGGAGATGGTGGCTTTGTCATCACGGAAACCGAGAC
ACACGAAGAGAATCTCTCGGCCTTTGAGAGCTTACCCACGGAGGCTCCCA
TTTTGCCGCCCGTCCAACTGAGATGTTGGTCCATAGACATGACTGCTGCG
CTGGGAGCTCTGGCAGTACTGCTCGTGGTGGGGGACACCTGGTGTGCCGT
TACGGATCCCCTGCGCTACCACAGTCGCATTTCGGGCGTGAAAACCTGGA
TCTTCATAGCACTCACCTGGGTGGTGGGCATACTCTTTGGAGCCCTTTCC
GCCTTCCGAGTTTTGGACTTTGAGGCGGACGCCCTGTTCAGCAGACAACG
CCGCCTGGCAGTCACGTACTTCAACATCAGCAGCACCAATAGTATTTTCG
GAGTGGTGTACGCCAGTGTCTACTTCATCGTGATCATCCTCCTGCCCTTC
GGCTTCGTGTGCGGAATGTACTGGAGGATATTCAGTGAGGCGCGCGGAAA
TGGGCTGCGCATGCGCCAGAATGGCTCTTCGCCGCTGCTGCAGAGCGCCT
TGAATCTGACGGCTGGCCAGCAGGCGGCTCAAGCCAACCAGTTCTCCAAT
AGCTTGTGTGTTCATCGGCATTCCATATCCTCGGCCAGTTCGCATGGCGG
CAACAGCAGCTTGGGCTTGGGCGGTCTGCAAATGCAAATTGATCAGCGCC
AACAGCCGAGGAGTTCGCCCAGTTGTCTCCGTCGGGACTCGGCCGCGAAA
GTACTTTTGCCCACCATCTCGGATGATGGTGGCTCAGATGCGGAAAGTGG
AGCCGGAGTTCAACTGATGCCCGTACAGGAGCACTCACTGTCAGATAGAA
ATCAGAACATTATGCTTACTCTGCAAACAGCCAGTGGTGAAATAAAGAGG
AACTACTCCGCCAGACAGCTGCCCCTGTTGGGCACTTCTTCGCAGGATCT
GAGGGAGACTAATCGTCTGCAGGGCATACGCCAGGTGCACAGTTCGCCCA
ATCTCCACAAGTACACGGAACTGCGCCAGGACTCGCTCAGTGAGGAGTGT
GGTTCTCCGCATCTTTTGGGTCACGCCCAGCGGCAGCAGCAGCAGCAATT
GCACCTGCAACATCAGCAGCAACAGCATCATCACCACCAGCAACATCATC
CGCACTTCAGTTCGCCGCGCCACCAGCAACACGGCCACGCCCTCCAGATA
CCCGCCATTCATGCCTCCCCCAAGGCTCTGAGTTACATGAGCTCCTTGCG
ACACCGTTTGAGCAACGCCAGTTCGCTATTCAAATACCGTGAGGAGTCGA
GAGCAGCCCGCATCAGCATCCTGGTGGTGGTGATGTTTGTGGTCTCGTAC
CTGCCCTTCGGACTGCTGGTACTCCTGCAATCGCGACTGTCGGCTGCTAA
CTTTGGCGGATCCTCCCAGCTGGCCATCTTCATGATCCTGCTGGCCAATC
TCAGTTCGCCATTCATCTTCGCCTACAGGAACAAGAGGGTGAGGCGAGGA
GTCAAGCGGCTGTTTGGTCTGGATTCGTCGTCGGGCCTGCAGCGCAACTG
CAGCAGCAGTGTAAAGACCAATGGCACCGCAGGTCCTGCTGCAAGTGGTG
CACAATTGCAGCGCAACAGCAGCAAGTTGTCGCAGTACAGCAGCAACAGC
TGCAAGTATCTCACCCCCCAGAGTTCCCTGGTCAGTCAAGTGCCGGTGCA
TACGACCTTGACGTTAAGGCCCAACAGCAGCTGCAGCACCATCATCAATT
TCGGTGGCGCCAGGGGCTCAGCGGACTCCGATGAGCAGCCACCGGCAACA
CCACCACCTACTGTGGCAGTTGCTCCACCGCCCACACGACCGCAGCGCCC
CAAGCTGCAGAGGGGCATCACCATCGTTGAGCACATAGCTATAACACCAA
CCATGCCCCAAAAGTTCCAGAATCGGCGCGCCAGGCTCTTCGACATGTTC
TTCCGCAGCTCCAAGAAACTGCAGGCGGGCTGCCAGAGCCAGAGTTTGCC
CACTGAGGTCGCAAGCTTTCTAGACCAT

BO07495.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12290-RB 2397 CG12290-PB 1..2394 17..2410 11970 100 Plus
CG12290-RA 2397 CG12290-PA 1..2394 17..2410 11970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12290-RB 4453 CG12290-RB 458..2851 17..2410 11970 100 Plus
CG12290-RA 3082 CG12290-RA 458..2851 17..2410 11970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26230705..26233098 17..2410 11970 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:21:28 has no hits.

BO07495.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:53 Download gff for BO07495.complete
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 1..2397 17..2414 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:54 Download gff for BO07495.complete
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 452..2850 14..2414 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:39 Download gff for BO07495.complete
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 458..2851 17..2412 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:53 Download gff for BO07495.complete
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 452..2850 14..2414 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:00 Download gff for BO07495.complete
Subject Subject Range Query Range Percent Splice Strand
CG12290-RA 458..2851 17..2412 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:00 Download gff for BO07495.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26230705..26233098 17..2412 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:39 Download gff for BO07495.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22056427..22058820 17..2412 99   Plus

BO07495.pep Sequence

Translation from 16 to 2428

> BO07495.pep
MAIDLLILALLLVSFLINLLALCAFWITPGLRTTANRFTINLLAINLIGC
CILAPTLFLGLPGKSAEASTSNAETLEFFSKPGNHQVILRRNGQLVEQDG
VVVRRNISENGDTVETFFKCNATYCRELTIDERGDGGFVITETETHEENL
SAFESLPTEAPILPPVQLRCWSIDMTAALGALAVLLVVGDTWCAVTDPLR
YHSRISGVKTWIFIALTWVVGILFGALSAFRVLDFEADALFSRQRRLAVT
YFNISSTNSIFGVVYASVYFIVIILLPFGFVCGMYWRIFSEARGNGLRMR
QNGSSPLLQSALNLTAGQQAAQANQFSNSLCVHRHSISSASSHGGNSSLG
LGGLQMQIDQRQQPRSSPSCLRRDSAAKVLLPTISDDGGSDAESGAGVQL
MPVQEHSLSDRNQNIMLTLQTASGEIKRNYSARQLPLLGTSSQDLRETNR
LQGIRQVHSSPNLHKYTELRQDSLSEECGSPHLLGHAQRQQQQQLHLQHQ
QQQHHHHQQHHPHFSSPRHQQHGHALQIPAIHASPKALSYMSSLRHRLSN
ASSLFKYREESRAARISILVVVMFVVSYLPFGLLVLLQSRLSAANFGGSS
QLAIFMILLANLSSPFIFAYRNKRVRRGVKRLFGLDSSSGLQRNCSSSVK
TNGTAGPAASGAQLQRNSSKLSQYSSNSCKYLTPQSSLVSQVPVHTTLTL
RPNSSCSTIINFGGARGSADSDEQPPATPPPTVAVAPPPTRPQRPKLQRG
ITIVEHIAITPTMPQKFQNRRARLFDMFFRSSKKLQAGCQSQSLPTEVAS
FLDH

BO07495.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12290-PB 798 CG12290-PB 1..798 1..798 4085 100 Plus
CG12290-PA 798 CG12290-PA 1..798 1..798 4085 100 Plus