Clone Sequence Records
BO07503.5prime Sequence
536 bp (535 high quality bases) assembled on 2006-01-06
> BO07503.5prime
GAAGTTATCAGTCGACATGGGGCTTCCTCCATTCAATGTCAGCGGCAGCC
CGTTCAATGTGGTTCCCATTCACAACTACCCGGAGCTTATGAAAGACACT
TGCGCCCTAATCAACGCAGAGTGGCCACGATCGGAAACGGCGCGCATGCG
CTCCCTGGAGGCCTCCTGTGACAGCCTACCCTGCAGCCTGGTGCTGACCA
CCGAGGGAATGTGCCGCGTGATCGCTCACCTCAAGCTCAGCCCGATCAAT
TCCAAGAAGAAGGCCTGCTTCGTCGAGTCCGTGGTGGTGGACAAGCGGCA
CCGTGGCCAGGGATTCGGCAAGCTGATCATGAAGTTCGCCGAGGACTATT
GCCGCGTCGTGCTGGACCTCAAGACCATATATCTGTCCACCATCGACCAG
GATGGATTCTACGAACGCATTGGCTACGAGTACTGCGCTCCCATTACAAT
GTATGGGCCGCGCCACTGTGAGCTGCCCAGCTTGCAAAATGCCAAAAAGA
AATACATGAAGAAGGTCTTAGCAAGCTTTCTAGACC
BO07503.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8481-PA | 507 | CG8481-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
| CG8481-PB | 537 | CG8481-RB | 34..534 | 20..520 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8481-RA | 1412 | CG8481-RA | 305..808 | 17..520 | 2520 | 100 | Plus |
| CG8481-RB | 1506 | CG8481-RB | 402..902 | 20..520 | 2505 | 100 | Plus |
| MED6-RB | 1758 | CG9473-RB | 1..63 | 81..19 | 315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9768922..9769423 | 19..520 | 2510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 14:10:12 has no hits.
BO07503.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:35 Download gff for
BO07503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8481-PA | 1..507 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:34 Download gff for
BO07503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8481-PA | 1..507 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:05:48 Download gff for
BO07503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8481-RA | 298..808 | 8..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:37:11 Download gff for
BO07503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8481-RA | 298..808 | 8..520 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:37:11 Download gff for
BO07503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9768911..9769423 | 6..520 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:05:48 Download gff for
BO07503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5594633..5595145 | 6..520 | 99 | | Plus |
BO07503.3prime Sequence
536 bp (535 high quality bases) assembled on 2006-01-06
> BO07503.3prime
ATGGTCTAGAAAGCTTGCTAAGACCTTCTTCATGTATTTCTTTTTGGCAT
TTTGCAAGCTGGGCAGCTCACAGTGGCGCGGCCCATACATTGTAATGGGA
GCGCAGTACTCGTAGCCAATGCGTTCGTAGAATCCATCCTGGTCGATGGT
GGACAGATATATGGTCTTGAGGTCCAGCACGACGCGGCAATAGTCCTCGG
CGAACTTCATGATCAGCTTGCCGAATCCCTGGCCACGGTGCCGCTTGTCC
ACCACCACGGACTCGACGAAGCAGGCCTTCTTCTTGGAATTGATCGGGCT
GAGCTTGAGGTGAGCGATCACGCGGCACATTCCCTCGGTGGTCAGCACCA
GGCTGCAGGGTAGGCTGTCACAGGAGGCCTCCAGGGAGCGCATGCGCGCC
GTTTCCGATCGTGGCCACTCTGCGTTGATTAGGGCGCAAGTGTCTTTCAT
AAGCTCCGGGTAGTTGTGAATGGGAACCACATTGAACGGGCTGCCGCTGA
CATTGAATGGAGGAAGCCCCATGTCGACTGATAACT
BO07503.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8481-PA | 507 | CG8481-RA | 1..504 | 522..19 | 2520 | 100 | Minus |
| CG8481-PB | 537 | CG8481-RB | 34..534 | 519..19 | 2505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8481-RA | 1412 | CG8481-RA | 305..808 | 522..19 | 2520 | 100 | Minus |
| CG8481-RB | 1506 | CG8481-RB | 402..902 | 519..19 | 2505 | 100 | Minus |
| MED6-RB | 1758 | CG9473-RB | 1..63 | 458..520 | 315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9768922..9769423 | 520..19 | 2510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:30:55 has no hits.
BO07503.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:33 Download gff for
BO07503.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8481-PA | 1..507 | 18..522 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:33 Download gff for
BO07503.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8481-PA | 1..507 | 18..522 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:03:48 Download gff for
BO07503.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8481-RA | 298..808 | 19..531 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:18 Download gff for
BO07503.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8481-RA | 298..808 | 19..531 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:18 Download gff for
BO07503.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9768911..9769423 | 19..533 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:03:48 Download gff for
BO07503.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5594633..5595145 | 19..533 | 99 | | Minus |
BO07503.complete Sequence
538 bp (538 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630815
> BO07503.complete
GAAGTTATCAGTCGACATGGGGCTTCCTCCATTCAATGTCAGCGGCAGCC
CGTTCAATGTGGTTCCCATTCACAACTACCCGGAGCTTATGAAAGACACT
TGCGCCCTAATCAACGCAGAGTGGCCACGATCGGAAACGGCGCGCATGCG
CTCCCTGGAGGCCTCCTGTGACAGCCTACCCTGCAGCCTGGTGCTGACCA
CCGAGGGAATGTGCCGCGTGATCGCTCACCTCAAGCTCAGCCCGATCAAT
TCCAAGAAGAAGGCCTGCTTCGTCGAGTCCGTGGTGGTGGACAAGCGGCA
CCGTGGCCAGGGATTCGGCAAGCTGATCATGAAGTTCGCCGAGGACTATT
GCCGCGTCGTGCTGGACCTCAAGACCATATATCTGTCCACCATCGACCAG
GATGGATTCTACGAACGCATTGGCTACGAGTACTGCGCTCCCATTACAAT
GTATGGGCCGCGCCACTGTGAGCTGCCCAGCTTGCAAAATGCCAAAAAGA
AATACATGAAGAAGGTCTTAGCAAGCTTTCTAGACCAT
BO07503.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8481-RA | 507 | CG8481-PA | 1..504 | 17..520 | 2520 | 100 | Plus |
| CG8481-RB | 537 | CG8481-PB | 34..534 | 20..520 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8481-RA | 1412 | CG8481-RA | 305..808 | 17..520 | 2520 | 100 | Plus |
| CG8481-RB | 1506 | CG8481-RB | 402..902 | 20..520 | 2505 | 100 | Plus |
| MED6-RB | 1758 | CG9473-RB | 1..63 | 81..19 | 315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:14:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9768922..9769423 | 19..520 | 2510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:14:05 has no hits.
BO07503.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:02 Download gff for
BO07503.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8481-RA | 1..507 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:52 Download gff for
BO07503.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8481-RA | 281..791 | 8..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:21 Download gff for
BO07503.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8481-RA | 305..808 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:02 Download gff for
BO07503.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8481-RA | 281..791 | 8..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:06 Download gff for
BO07503.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8481-RA | 305..808 | 17..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:06 Download gff for
BO07503.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9768921..9769423 | 17..522 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:21 Download gff for
BO07503.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5594643..5595145 | 17..522 | 99 | | Plus |
BO07503.pep Sequence
Translation from 16 to 538
> BO07503.pep
MGLPPFNVSGSPFNVVPIHNYPELMKDTCALINAEWPRSETARMRSLEAS
CDSLPCSLVLTTEGMCRVIAHLKLSPINSKKKACFVESVVVDKRHRGQGF
GKLIMKFAEDYCRVVLDLKTIYLSTIDQDGFYERIGYEYCAPITMYGPRH
CELPSLQNAKKKYMKKVLASFLDH
BO07503.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8481-PA | 168 | CG8481-PA | 1..168 | 1..168 | 898 | 100 | Plus |
| CG8481-PB | 178 | CG8481-PB | 12..178 | 2..168 | 893 | 100 | Plus |
