Clone BO07504 Report

Search the DGRC for BO07504

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG31550-RA
Protein status:BO07504.pep: validated not full length
Sequenced Size:973

Clone Sequence Records

BO07504.3prime Sequence

938 bp (846 high quality bases) assembled on 2006-01-06

> BO07504.3prime
ATGGTCTAGAAAGCTTGCGTAGTAGGCGCGACGTGGATTGTTCAAAGGAT
TTGGACGAAAACGATAGGCCAACATCATTCGCTTCCTGTAGGCGTCATAT
TCATTGTCGCAGTCCTCTGGCTGGGCAGCGCTGCTGACACCAAGTCCTTG
GTTTCCATCGCGTTGCGGTGCCTTGTTAACGGGGTCCACAATTCCAGCTC
CGTCCTGTCCTAAGCCCTGCCCCTCTTTCCAGCCGAGTTTTTGCAGCATT
TGGAAGCCAATGTTGTCCTCCTTTAGTTTGTACTCCTTGTAGTCGCTTAG
ATCCGGCTGCCTGTTGTTCTTCTTCGCCTCGTACTGCTCCATGAACTTCT
TGAGCTCCTCGGGGGGCAGAAAGTCGCCGATGTGATGCTTGCCTTCGCTT
TGCTTGGTCAGGGCGTTTGCCCATAGGGATGTGGCCTCCATTTCGGCTGT
TCGCAACTTGTGCTCCCACGTCCCGCCCTCAATGTCCTCGTCCGAGTCGT
ATTCGTACTTGAATTTACCGCCACGGGCCAGTCGATCGATTTCCTGACGC
TTGCGCATCATGTCCTGATACAGCAGGTTTACTTTGTAGTGCTCCTCGCA
CTGCTTCCACTGCTCCTCGCTCAGCTGAGTCGATCCATAGTTGAGCCGAG
CATACTGCAACAACGCGGGATCTGTTCGCGTGATGCCACTTAGTATGGGT
TTATTTTGGTTACCAAAGTTTCCCGAAGTGCTTGAGGATGGCAACTGTTG
CTCTTTCTCGCCCCATCGGCTCTTGCGCTCGCGCTTCCTACGCTGCCTCT
GCGACTCCTTGTCGTCTTGGTCGTCCTGGTCATCGCCATCCGGCGGTTCT
CGGGATGCAGCCTCCTCCCGTTCGCGCCTCTCCTCGTCGCTCAGCTCGTT
GCGACACTCAATGCGGCGCTTGATGTTGTCCCGGTTGC

BO07504.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-PB 2499 CG31550-RB 1577..2496 938..19 4575 99.8 Minus
CG31550-PA 942 CG31550-RA 20..939 938..19 4575 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-RD 2700 CG31550-RD 1682..2601 938..19 4585 99.9 Minus
CG31550-RC 2573 CG31550-RC 1555..2474 938..19 4585 99.9 Minus
CG31550-RA 1849 CG31550-RA 831..1750 938..19 4585 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5488532..5489091 731..172 2800 100 Minus
3R 32079331 3R 5488101..5488308 938..731 1025 99.5 Minus
3R 32079331 3R 5489139..5489273 177..43 660 99.3 Minus
Blast to na_te.dros performed on 2015-02-13 05:31:01 has no hits.

BO07504.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:36 Download gff for BO07504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31550-PB 1577..2499 18..938 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:36 Download gff for BO07504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31550-PA 20..942 18..938 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:03:51 Download gff for BO07504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31550-RA 831..1754 13..938 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:31 Download gff for BO07504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31550-RA 831..1754 13..938 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:31 Download gff for BO07504.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5488101..5488307 732..938 99 -> Minus
3R 5488532..5489090 173..731 100 -> Minus
3R 5489144..5489273 43..172 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:03:51 Download gff for BO07504.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1313823..1314029 732..938 99 -> Minus
arm_3R 1314254..1314812 173..731 100 -> Minus
arm_3R 1314866..1314995 43..172 100 -> Minus

BO07504.5prime Sequence

887 bp (847 high quality bases) assembled on 2006-01-06

> BO07504.5prime
GAAGTTATCAGTCGACATGCGGGGCATGATGGATCGCAACCGGGACAACA
TCAAGCGCCGCATTGAGTGTCGCAACGAGCTGAGCGACGAGGAGAGGCGC
GAACGGGAGGAGGCTGCATCCGGAGAACCGCCGGATGGCGATGACCAGGA
CGACCAAGACGACAAGGAGTCGCAGAGGCAGCGTAGGAAGCGCGAGCGCA
AGAGCCGATGGGGCGAGAAAGAGCAACAGTTGCCATCCTCAAGCACTTCG
GGAAACTTTGGTAACCAAAATAAACCCATACTAAGTGGCATCACGCGAAC
AGATCCCGCGTTGTTGCAGTATGCTCGGCTCAACTATGGATCGACTCAGC
TGAGCGAGGAGCAGTGGAAGCAGTGCGAGGAGCACTACAAAGTAAACCTG
CTGTATCAGGACATGATGCGCAAGCGTCAGGAAATCGATCGACTGGCCCG
TGGCGGTAAATTCAAGTACGAATACGACTCGGACGAGGACATTGAGGGCG
GGACGTGGGAGCACAAGTTGCGAACAGCCGAAATGGAGGCCACATCCCTA
TGGGCAAACGCCCTGACCAAGCAAAGCGAAGGCAAGCATCACATCGGCGA
CTTTCTGCCCCCCGAGGAGCTCAAGAAGTTCATGGAGCAGTACGAGGCGA
AGAAGAACAACAGGCAGCCGGATCTAAGCGACTACAAGGAGTACAAACTA
AAGGAGGACAACATTGGCTTCCAAATGCTGCAAAAACTCGGCTGGAAAGA
GGGGCAGGGCTTAGGACAGGACGGAGCTGGAATTGTGGACCCCGTTAACA
AGGCACCGCAACGCGATGGAAACCAAGGACTTGGTGTCAGCAGCGCTGCC
CAGCCAGAGGACTGCGACAATGAATATGACGCCTACA

BO07504.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-PB 2499 CG31550-RB 1556..2428 15..887 4365 100 Plus
CG31550-PA 942 CG31550-RA 1..871 17..887 4355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-RD 2700 CG31550-RD 1661..2533 15..887 4365 100 Plus
CG31550-RC 2573 CG31550-RC 1534..2406 15..887 4365 100 Plus
CG31550-RA 1849 CG31550-RA 810..1682 15..887 4365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5488532..5489091 243..802 2800 100 Plus
3R 32079331 3R 5488080..5488308 15..243 1145 100 Plus
3R 32079331 3R 5489139..5489229 797..887 440 98.9 Plus
Blast to na_te.dros performed on 2015-02-12 00:04:00 has no hits.

BO07504.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:37 Download gff for BO07504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31550-PB 1553..2427 10..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:37 Download gff for BO07504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31550-PB 1553..2427 10..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:58 Download gff for BO07504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31550-RA 807..1681 10..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:23 Download gff for BO07504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31550-RA 807..1681 10..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:23 Download gff for BO07504.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5488077..5488307 10..242 99 -> Plus
3R 5488532..5489090 243..801 100 -> Plus
3R 5489144..5489228 802..886 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:58 Download gff for BO07504.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1313799..1314029 10..242 99 -> Plus
arm_3R 1314254..1314812 243..801 100 -> Plus
arm_3R 1314866..1314950 802..886 100   Plus

BO07504.complete Sequence

973 bp (973 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630816

> BO07504.complete
GAAGTTATCAGTCGACATGCGGGGCATGATGGATCGCAACCGGGACAACA
TCAAGCGCCGCATTGAGTGTCGCAACGAGCTGAGCGACGAGGAGAGGCGC
GAACGGGAGGAGGCTGCATCCGGAGAACCGCCGGATGGCGATGACCAGGA
CGACCAAGACGACAAGGAGTCGCAGAGGCAGCGTAGGAAGCGCGAGCGCA
AGAGCCGATGGGGCGAGAAAGAGCAACAGTTGCCATCCTCAAGCACTTCG
GGAAACTTTGGTAACCAAAATAAACCCATACTAAGTGGCATCACGCGAAC
AGATCCCGCGTTGTTGCAGTATGCTCGGCTCAACTATGGATCGACTCAGC
TGAGCGAGGAGCAGTGGAAGCAGTGCGAGGAGCACTACAAAGTAAACCTG
CTGTATCAGGACATGATGCGCAAGCGTCAGGAAATCGATCGACTGGCCCG
TGGCGGTAAATTCAAGTACGAATACGACTCGGACGAGGACATTGAGGGCG
GGACGTGGGAGCACAAGTTGCGAACAGCCGAAATGGAGGCCACATCCCTA
TGGGCAAACGCCCTGACCAAGCAAAGCGAAGGCAAGCATCACATCGGCGA
CTTTCTGCCCCCCGAGGAGCTCAAGAAGTTCATGGAGCAGTACGAGGCGA
AGAAGAACAACAGGCAGCCGGATCTAAGCGACTACAAGGAGTACAAACTA
AAGGAGGACAACATTGGCTTCCAAATGCTGCAAAAACTCGGCTGGAAAGA
GGGGCAGGGCTTAGGACAGGACGGAGCTGGAATTGTGGACCCCGTTAACA
AGGCACCGCAACGCGATGGAAACCAAGGACTTGGTGTCAGCAGCGCTGCC
CAGCCAGAGGACTGCGACAATGAATATGACGCCTACAGGAAGCGAATGAT
GTTGGCCTATCGTTTTCGTCCAAATCCTTTGAACAATCCACGTCGCGCCT
ACTACGCAAGCTTTCTAGACCAT

BO07504.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-RD 2508 CG31550-PD 1565..2505 15..955 4705 100 Plus
CG31550-RB 2499 CG31550-PB 1556..2496 15..955 4705 100 Plus
CG31550-RA 942 CG31550-PA 1..939 17..955 4695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-RD 2700 CG31550-RD 1661..2601 15..955 4705 100 Plus
CG31550-RC 2573 CG31550-RC 1534..2474 15..955 4705 100 Plus
CG31550-RA 1849 CG31550-RA 810..1750 15..955 4705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5488532..5489091 243..802 2800 100 Plus
3R 32079331 3R 5488080..5488308 15..243 1145 100 Plus
3R 32079331 3R 5489139..5489273 797..931 660 99.3 Plus
Blast to na_te.dros performed on 2014-11-27 15:09:35 has no hits.

BO07504.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:03 Download gff for BO07504.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RB 1553..2499 10..956 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:54 Download gff for BO07504.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RC 1542..2489 10..961 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:51 Download gff for BO07504.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RA 812..1750 17..957 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:03 Download gff for BO07504.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RC 1542..2489 10..961 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:12 Download gff for BO07504.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RA 812..1750 17..957 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:12 Download gff for BO07504.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5489144..5489273 802..931 100 -> Plus
3R 5489367..5489390 932..957 92   Plus
3R 5488082..5488307 17..242 100 -> Plus
3R 5488532..5489090 243..801 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:51 Download gff for BO07504.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1314866..1314995 802..931 100 -> Plus
arm_3R 1315089..1315112 932..957 92   Plus
arm_3R 1313804..1314029 17..242 100 -> Plus
arm_3R 1314254..1314812 243..801 100 -> Plus

BO07504.pep Sequence

Translation from 16 to 973

> BO07504.pep
MRGMMDRNRDNIKRRIECRNELSDEERREREEAASGEPPDGDDQDDQDDK
ESQRQRRKRERKSRWGEKEQQLPSSSTSGNFGNQNKPILSGITRTDPALL
QYARLNYGSTQLSEEQWKQCEEHYKVNLLYQDMMRKRQEIDRLARGGKFK
YEYDSDEDIEGGTWEHKLRTAEMEATSLWANALTKQSEGKHHIGDFLPPE
ELKKFMEQYEAKKNNRQPDLSDYKEYKLKEDNIGFQMLQKLGWKEGQGLG
QDGAGIVDPVNKAPQRDGNQGLGVSSAAQPEDCDNEYDAYRKRMMLAYRF
RPNPLNNPRRAYYASFLDH

BO07504.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-PA 313 CG31550-PA 1..313 1..313 1679 100 Plus
CG31550-PB 832 CG31550-PB 520..832 1..313 1679 100 Plus
CG31550-PD 835 CG31550-PD 523..835 1..313 1679 100 Plus