Clone Sequence Records
BO07504.3prime Sequence
938 bp (846 high quality bases) assembled on 2006-01-06
> BO07504.3prime
ATGGTCTAGAAAGCTTGCGTAGTAGGCGCGACGTGGATTGTTCAAAGGAT
TTGGACGAAAACGATAGGCCAACATCATTCGCTTCCTGTAGGCGTCATAT
TCATTGTCGCAGTCCTCTGGCTGGGCAGCGCTGCTGACACCAAGTCCTTG
GTTTCCATCGCGTTGCGGTGCCTTGTTAACGGGGTCCACAATTCCAGCTC
CGTCCTGTCCTAAGCCCTGCCCCTCTTTCCAGCCGAGTTTTTGCAGCATT
TGGAAGCCAATGTTGTCCTCCTTTAGTTTGTACTCCTTGTAGTCGCTTAG
ATCCGGCTGCCTGTTGTTCTTCTTCGCCTCGTACTGCTCCATGAACTTCT
TGAGCTCCTCGGGGGGCAGAAAGTCGCCGATGTGATGCTTGCCTTCGCTT
TGCTTGGTCAGGGCGTTTGCCCATAGGGATGTGGCCTCCATTTCGGCTGT
TCGCAACTTGTGCTCCCACGTCCCGCCCTCAATGTCCTCGTCCGAGTCGT
ATTCGTACTTGAATTTACCGCCACGGGCCAGTCGATCGATTTCCTGACGC
TTGCGCATCATGTCCTGATACAGCAGGTTTACTTTGTAGTGCTCCTCGCA
CTGCTTCCACTGCTCCTCGCTCAGCTGAGTCGATCCATAGTTGAGCCGAG
CATACTGCAACAACGCGGGATCTGTTCGCGTGATGCCACTTAGTATGGGT
TTATTTTGGTTACCAAAGTTTCCCGAAGTGCTTGAGGATGGCAACTGTTG
CTCTTTCTCGCCCCATCGGCTCTTGCGCTCGCGCTTCCTACGCTGCCTCT
GCGACTCCTTGTCGTCTTGGTCGTCCTGGTCATCGCCATCCGGCGGTTCT
CGGGATGCAGCCTCCTCCCGTTCGCGCCTCTCCTCGTCGCTCAGCTCGTT
GCGACACTCAATGCGGCGCTTGATGTTGTCCCGGTTGC
BO07504.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31550-PB | 2499 | CG31550-RB | 1577..2496 | 938..19 | 4575 | 99.8 | Minus |
CG31550-PA | 942 | CG31550-RA | 20..939 | 938..19 | 4575 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31550-RD | 2700 | CG31550-RD | 1682..2601 | 938..19 | 4585 | 99.9 | Minus |
CG31550-RC | 2573 | CG31550-RC | 1555..2474 | 938..19 | 4585 | 99.9 | Minus |
CG31550-RA | 1849 | CG31550-RA | 831..1750 | 938..19 | 4585 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5488532..5489091 | 731..172 | 2800 | 100 | Minus |
3R | 32079331 | 3R | 5488101..5488308 | 938..731 | 1025 | 99.5 | Minus |
3R | 32079331 | 3R | 5489139..5489273 | 177..43 | 660 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:31:01 has no hits.
BO07504.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:36 Download gff for
BO07504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-PB | 1577..2499 | 18..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:36 Download gff for
BO07504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-PA | 20..942 | 18..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:03:51 Download gff for
BO07504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RA | 831..1754 | 13..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:31 Download gff for
BO07504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RA | 831..1754 | 13..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:31 Download gff for
BO07504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5488101..5488307 | 732..938 | 99 | -> | Minus |
3R | 5488532..5489090 | 173..731 | 100 | -> | Minus |
3R | 5489144..5489273 | 43..172 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:03:51 Download gff for
BO07504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1313823..1314029 | 732..938 | 99 | -> | Minus |
arm_3R | 1314254..1314812 | 173..731 | 100 | -> | Minus |
arm_3R | 1314866..1314995 | 43..172 | 100 | -> | Minus |
BO07504.5prime Sequence
887 bp (847 high quality bases) assembled on 2006-01-06
> BO07504.5prime
GAAGTTATCAGTCGACATGCGGGGCATGATGGATCGCAACCGGGACAACA
TCAAGCGCCGCATTGAGTGTCGCAACGAGCTGAGCGACGAGGAGAGGCGC
GAACGGGAGGAGGCTGCATCCGGAGAACCGCCGGATGGCGATGACCAGGA
CGACCAAGACGACAAGGAGTCGCAGAGGCAGCGTAGGAAGCGCGAGCGCA
AGAGCCGATGGGGCGAGAAAGAGCAACAGTTGCCATCCTCAAGCACTTCG
GGAAACTTTGGTAACCAAAATAAACCCATACTAAGTGGCATCACGCGAAC
AGATCCCGCGTTGTTGCAGTATGCTCGGCTCAACTATGGATCGACTCAGC
TGAGCGAGGAGCAGTGGAAGCAGTGCGAGGAGCACTACAAAGTAAACCTG
CTGTATCAGGACATGATGCGCAAGCGTCAGGAAATCGATCGACTGGCCCG
TGGCGGTAAATTCAAGTACGAATACGACTCGGACGAGGACATTGAGGGCG
GGACGTGGGAGCACAAGTTGCGAACAGCCGAAATGGAGGCCACATCCCTA
TGGGCAAACGCCCTGACCAAGCAAAGCGAAGGCAAGCATCACATCGGCGA
CTTTCTGCCCCCCGAGGAGCTCAAGAAGTTCATGGAGCAGTACGAGGCGA
AGAAGAACAACAGGCAGCCGGATCTAAGCGACTACAAGGAGTACAAACTA
AAGGAGGACAACATTGGCTTCCAAATGCTGCAAAAACTCGGCTGGAAAGA
GGGGCAGGGCTTAGGACAGGACGGAGCTGGAATTGTGGACCCCGTTAACA
AGGCACCGCAACGCGATGGAAACCAAGGACTTGGTGTCAGCAGCGCTGCC
CAGCCAGAGGACTGCGACAATGAATATGACGCCTACA
BO07504.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31550-PB | 2499 | CG31550-RB | 1556..2428 | 15..887 | 4365 | 100 | Plus |
CG31550-PA | 942 | CG31550-RA | 1..871 | 17..887 | 4355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31550-RD | 2700 | CG31550-RD | 1661..2533 | 15..887 | 4365 | 100 | Plus |
CG31550-RC | 2573 | CG31550-RC | 1534..2406 | 15..887 | 4365 | 100 | Plus |
CG31550-RA | 1849 | CG31550-RA | 810..1682 | 15..887 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:03:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5488532..5489091 | 243..802 | 2800 | 100 | Plus |
3R | 32079331 | 3R | 5488080..5488308 | 15..243 | 1145 | 100 | Plus |
3R | 32079331 | 3R | 5489139..5489229 | 797..887 | 440 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:04:00 has no hits.
BO07504.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:37 Download gff for
BO07504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-PB | 1553..2427 | 10..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:37 Download gff for
BO07504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-PB | 1553..2427 | 10..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:58 Download gff for
BO07504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RA | 807..1681 | 10..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:23 Download gff for
BO07504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RA | 807..1681 | 10..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:23 Download gff for
BO07504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5488077..5488307 | 10..242 | 99 | -> | Plus |
3R | 5488532..5489090 | 243..801 | 100 | -> | Plus |
3R | 5489144..5489228 | 802..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:58 Download gff for
BO07504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1313799..1314029 | 10..242 | 99 | -> | Plus |
arm_3R | 1314254..1314812 | 243..801 | 100 | -> | Plus |
arm_3R | 1314866..1314950 | 802..886 | 100 | | Plus |
BO07504.complete Sequence
973 bp (973 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630816
> BO07504.complete
GAAGTTATCAGTCGACATGCGGGGCATGATGGATCGCAACCGGGACAACA
TCAAGCGCCGCATTGAGTGTCGCAACGAGCTGAGCGACGAGGAGAGGCGC
GAACGGGAGGAGGCTGCATCCGGAGAACCGCCGGATGGCGATGACCAGGA
CGACCAAGACGACAAGGAGTCGCAGAGGCAGCGTAGGAAGCGCGAGCGCA
AGAGCCGATGGGGCGAGAAAGAGCAACAGTTGCCATCCTCAAGCACTTCG
GGAAACTTTGGTAACCAAAATAAACCCATACTAAGTGGCATCACGCGAAC
AGATCCCGCGTTGTTGCAGTATGCTCGGCTCAACTATGGATCGACTCAGC
TGAGCGAGGAGCAGTGGAAGCAGTGCGAGGAGCACTACAAAGTAAACCTG
CTGTATCAGGACATGATGCGCAAGCGTCAGGAAATCGATCGACTGGCCCG
TGGCGGTAAATTCAAGTACGAATACGACTCGGACGAGGACATTGAGGGCG
GGACGTGGGAGCACAAGTTGCGAACAGCCGAAATGGAGGCCACATCCCTA
TGGGCAAACGCCCTGACCAAGCAAAGCGAAGGCAAGCATCACATCGGCGA
CTTTCTGCCCCCCGAGGAGCTCAAGAAGTTCATGGAGCAGTACGAGGCGA
AGAAGAACAACAGGCAGCCGGATCTAAGCGACTACAAGGAGTACAAACTA
AAGGAGGACAACATTGGCTTCCAAATGCTGCAAAAACTCGGCTGGAAAGA
GGGGCAGGGCTTAGGACAGGACGGAGCTGGAATTGTGGACCCCGTTAACA
AGGCACCGCAACGCGATGGAAACCAAGGACTTGGTGTCAGCAGCGCTGCC
CAGCCAGAGGACTGCGACAATGAATATGACGCCTACAGGAAGCGAATGAT
GTTGGCCTATCGTTTTCGTCCAAATCCTTTGAACAATCCACGTCGCGCCT
ACTACGCAAGCTTTCTAGACCAT
BO07504.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31550-RD | 2508 | CG31550-PD | 1565..2505 | 15..955 | 4705 | 100 | Plus |
CG31550-RB | 2499 | CG31550-PB | 1556..2496 | 15..955 | 4705 | 100 | Plus |
CG31550-RA | 942 | CG31550-PA | 1..939 | 17..955 | 4695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31550-RD | 2700 | CG31550-RD | 1661..2601 | 15..955 | 4705 | 100 | Plus |
CG31550-RC | 2573 | CG31550-RC | 1534..2474 | 15..955 | 4705 | 100 | Plus |
CG31550-RA | 1849 | CG31550-RA | 810..1750 | 15..955 | 4705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5488532..5489091 | 243..802 | 2800 | 100 | Plus |
3R | 32079331 | 3R | 5488080..5488308 | 15..243 | 1145 | 100 | Plus |
3R | 32079331 | 3R | 5489139..5489273 | 797..931 | 660 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:09:35 has no hits.
BO07504.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:03 Download gff for
BO07504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RB | 1553..2499 | 10..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:54 Download gff for
BO07504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RC | 1542..2489 | 10..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:51 Download gff for
BO07504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RA | 812..1750 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:03 Download gff for
BO07504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RC | 1542..2489 | 10..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:12 Download gff for
BO07504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31550-RA | 812..1750 | 17..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:12 Download gff for
BO07504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5489144..5489273 | 802..931 | 100 | -> | Plus |
3R | 5489367..5489390 | 932..957 | 92 | | Plus |
3R | 5488082..5488307 | 17..242 | 100 | -> | Plus |
3R | 5488532..5489090 | 243..801 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:51 Download gff for
BO07504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1314866..1314995 | 802..931 | 100 | -> | Plus |
arm_3R | 1315089..1315112 | 932..957 | 92 | | Plus |
arm_3R | 1313804..1314029 | 17..242 | 100 | -> | Plus |
arm_3R | 1314254..1314812 | 243..801 | 100 | -> | Plus |
BO07504.pep Sequence
Translation from 16 to 973
> BO07504.pep
MRGMMDRNRDNIKRRIECRNELSDEERREREEAASGEPPDGDDQDDQDDK
ESQRQRRKRERKSRWGEKEQQLPSSSTSGNFGNQNKPILSGITRTDPALL
QYARLNYGSTQLSEEQWKQCEEHYKVNLLYQDMMRKRQEIDRLARGGKFK
YEYDSDEDIEGGTWEHKLRTAEMEATSLWANALTKQSEGKHHIGDFLPPE
ELKKFMEQYEAKKNNRQPDLSDYKEYKLKEDNIGFQMLQKLGWKEGQGLG
QDGAGIVDPVNKAPQRDGNQGLGVSSAAQPEDCDNEYDAYRKRMMLAYRF
RPNPLNNPRRAYYASFLDH
BO07504.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31550-PA | 313 | CG31550-PA | 1..313 | 1..313 | 1679 | 100 | Plus |
CG31550-PB | 832 | CG31550-PB | 520..832 | 1..313 | 1679 | 100 | Plus |
CG31550-PD | 835 | CG31550-PD | 523..835 | 1..313 | 1679 | 100 | Plus |