Clone BO07508 Report

Search the DGRC for BO07508

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:8
Vector:pDNR-Dual
Associated Gene/Transcriptrepo-RA
Protein status:BO07508.pep: full length peptide match
Sequenced Size:1870

Clone Sequence Records

BO07508.3prime Sequence

893 bp (778 high quality bases) assembled on 2006-01-06

> BO07508.3prime
ATGGTCTAGAAAGCTTGCGTGCAAAAAAGGCGGCAGGACGTAGCTCTGTC
CCTGCTGCTGCTGCTGCTGTTGGGAGACCTCCTCGCTCTTGATCACAGTC
TGCATGCCGCCGCTGTCGTTGTCATCGCTGCTGGTGCCGCCCGCGGATGC
AGCTCCTCCCGTCGCCGTGGTCACATAGTGCTGGCCCTGCGCCTCCACCA
GATGACAGCTGGCGCCGGGACTTAGCTCCAGACCACCTCCACTCTGATGG
CACTGCAGGTGCACGTATTTGGCCTCCTCGGCGCTCAGGTACTTGCCATT
GAGTTGCTGCTGCTGCTGCTGCTGCTGTTGGTGGGCATGGACGGTGACCA
GTGTGCCGTCGGCCAGTTGCTGCTGCTGGGCGGTCTGCAGTTCCGCCGTC
TGATAGCTGCCGCCATTGGCCACCGACTCATCTCCGTTTCCGGCCACCGA
ACCGGTTGTGGCGCCCATTTCCATGCGCGTGGGACTACCGTACTCGTAGT
GACGCATCGGGAAGAGCTGGCTTTCGTGCACATAGGCACCGTACTGGCCG
GAATAGGTGCCATACGGACTGGCCGCCGGCGAGAGCAGGCTGAACTGGGG
CGTCAGTTCGTAGGGCGTCTGGTAGCTGGTCCAGCTGTCCATGCTGCCCG
GCGGCGTGACCGTCGTCGTCTGCGGGTAGCTAGTGAATGGTGGGGCTAGG
GTTCCGGGATTCAGTGTCGCCGTCGGCGGAGTGCTCGTCTTGATGTAGCC
CGTCTTGCGCGGTGGCTCGTGCTTGCGCCACTTGGCCCGTCGGTTCTGGA
ACCACACCTGCACACGGGATTCGCTCAGATTCAGCTTGATGGCCAGCTCC
TCGCGGGCGAAAACATCCGGATACGGAGCACGTTCAAAGGCAC

BO07508.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31240-PA 1839 repo-RA 962..1836 893..19 4375 100 Minus
CG2819-PA 1074 Pph13-RA 160..203 813..770 195 97.7 Minus
CG11294-PA 786 CG11294-RA 205..245 810..770 155 95.1 Minus
CG2851-PA 1260 Gsc-RA 992..1031 809..770 150 95 Minus
CG33980-PA 1923 CG33980-RA 823..861 810..772 145 94.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
repo-RA 2996 CG31240-RA 1267..2141 893..19 4375 100 Minus
CG34340-RF 2989 CG34340-RF 815..916 873..772 240 82.4 Minus
CG34340-RE 2612 CG34340-RE 815..916 873..772 240 82.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18237873..18238747 893..19 4375 100 Minus
2L 23513712 2L 578273..578320 813..766 210 95.8 Minus
X 23542271 X 8692709..8692751 770..812 185 95.3 Plus
Blast to na_te.dros performed 2015-02-12 00:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6821 333..303 137 93.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2280..2432 457..304 118 59.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6806..6917 418..303 110 62.2 Minus

BO07508.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:43 Download gff for BO07508.3prime
Subject Subject Range Query Range Percent Splice Strand
repo-PA 962..1839 16..893 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:48 Download gff for BO07508.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31240-PA 962..1839 16..893 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:59 Download gff for BO07508.3prime
Subject Subject Range Query Range Percent Splice Strand
repo-RA 1265..2139 19..893 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:28 Download gff for BO07508.3prime
Subject Subject Range Query Range Percent Splice Strand
repo-RA 1267..2141 19..893 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:28 Download gff for BO07508.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18237873..18238746 20..893 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:59 Download gff for BO07508.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14063595..14064468 20..893 100 <- Minus

BO07508.5prime Sequence

764 bp (763 high quality bases) assembled on 2006-01-06

> BO07508.5prime
GAAGTTATCAGTCGACATGGAACACGATAGCTTCGATGATCCCATTTTCG
GGGAGTTCGGCGGCGGGCCACTCAATCCACTGGGCGCCAAGCCACTGATG
CCCACCACAACGGCCATGCATCCCGTGATGCTGGGCAGTGTCCACGAGTT
GTGCAGCCAACAGCAGCAGCAGCAGCAGCAGCAACGATTGCCCGACTGCA
ACACCATACTGCCGAATGGCGGAGGAGGAGGAGCAGGATCTGGCGGCGCT
GGAGGATCGCCCAACTATGTGACCAAGCTGGATTTTGTCAACAAGATGGG
CTGCTACTCGCCCAGCCAGAAGTACGAGTACATTAGTGCGCCGCAAAAAC
TGGTGGAGCAGCAGCAGCAGCAGCAGCATCATCATCAACATCATCAGCAC
TACACGGCCACGCCCCCGCCCAGCCACAATGGCATCCTGCTGCACAAGCA
ATCCTCCCAGCAGCAACAGCAGCAGCAGCAACAGCTGGTGGGCATCCTGG
ACTATCATCCGCTCAATGGCAAGCTGGACTACTCCTCGTCGCCCAAAGAT
CAGTACGAGCCGCAGCAGCTGCAGCATCTGTACGGCGGCAGTCCGCATCA
TCTGGACCATTTGGATCATGGCAGTGATGGCTTGCTCCAGGACTCCTCGC
CCGTCATGATCAACGGAGGATCCGCTGGTGGCAAGCTAAAGAAGCCCGAT
GAGATGTGTTCGCAGTTGGAGGCGGGTGGTGCTGGAGTTACTCCGCCAAG
TAGTTCCTCCACGG

BO07508.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31240-PA 1839 repo-RA 1..748 17..764 3740 100 Plus
CG15771-PA 1068 CG15771-RA 944..978 363..397 150 97.1 Plus
CG18599-PA 1428 CG18599-RA 252..293 358..399 135 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
repo-RA 2996 CG31240-RA 306..1053 17..764 3740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18236497..18237244 17..764 3740 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:50:58 has no hits.

BO07508.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:45 Download gff for BO07508.5prime
Subject Subject Range Query Range Percent Splice Strand
repo-PA 1..748 17..764 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:50 Download gff for BO07508.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31240-PA 1..748 17..764 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:22:21 Download gff for BO07508.5prime
Subject Subject Range Query Range Percent Splice Strand
repo-RA 298..1051 10..764 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:21:25 Download gff for BO07508.5prime
Subject Subject Range Query Range Percent Splice Strand
repo-RA 300..1053 10..764 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:21:25 Download gff for BO07508.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18236491..18237244 10..764 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:22:21 Download gff for BO07508.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14062213..14062966 10..764 99   Plus

BO07508.complete Sequence

1870 bp (1870 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630818

> BO07508.complete
GAAGTTATCAGTCGACATGGAACACGATAGCTTCGATGATCCCATTTTCG
GGGAGTTCGGCGGCGGGCCACTCAATCCACTGGGCGCCAAGCCACTGATG
CCCACCACAACGGCCATGCATCCCGTGATGCTGGGCAGTGTCCACGAGTT
GTGCAGCCAACAGCAGCAGCAGCAGCAGCAGCAACGATTGCCCGACTGCA
ACACCATACTGCCGAATGGCGGAGGAGGAGGAGCAGGATCTGGCGGCGCT
GGAGGATCGCCCAACTATGTGACCAAGCTGGATTTTGTCAACAAGATGGG
CTGCTACTCGCCCAGCCAGAAGTACGAGTACATTAGTGCGCCGCAAAAAC
TGGTGGAGCAGCAGCAGCAGCAGCAGCATCATCATCAACATCATCAGCAC
TACACGGCCACGCCCCCGCCCAGCCACAATGGCATCCTGCTGCACAAGCA
ATCCTCCCAGCAGCAACAGCAGCAGCAGCAACAGCTGGTGGGCATCCTGG
ACTATCATCCGCTCAATGGCAAGCTGGACTACTCCTCGTCGCCCAAAGAT
CAGTACGAGCCGCAGCAGCTGCAGCATCTGTACGGCGGCAGTCCGCATCA
TCTGGACCATTTGGATCATGGCAGTGATGGCTTGCTCCAGGACTCCTCGC
CCGTCATGATCAACGGAGGATCCGCTGGTGGCAAGCTAAAGAAGCCCGAT
GAGATGTGTTCGCAGTTGGAGGCGGGTGGTGCTGGAGTTACTCCGCCAAG
TAGTTCCTCCACGGTGGTTAATGGCACCACCAATGGCACTGGCAACGCCA
ACTCCTCCTCCTCCGCTGGCGTCGGCATTCAGGGGGCGGCGGGCACAGCG
GGGGGCGTGGCAGCTCCTGCAGCCAAAAAGGACGGAAGCAGCAGCAAGAA
GAAGGGCGATCCCAATGGCATCAAGAAGAAGAAGACGAGAACCACCTTTA
CTGCCTACCAGCTGGAGGAGTTGGAGCGTGCCTTTGAACGTGCTCCGTAT
CCGGATGTTTTCGCCCGCGAGGAGCTGGCCATCAAGCTGAATCTGAGCGA
ATCCCGTGTGCAGGTGTGGTTCCAGAACCGACGGGCCAAGTGGCGCAAGC
ACGAGCCACCGCGCAAGACGGGCTACATCAAGACGAGCACTCCGCCGACG
GCGACACTGAATCCCGGAACCCTAGCCCCACCATTCACTAGCTACCCGCA
GACGACGACGGTCACGCCGCCGGGCAGCATGGACAGCTGGACCAGCTACC
AGACGCCCTACGAACTGACGCCCCAGTTCAGCCTGCTCTCGCCGGCGGCC
AGTCCGTATGGCACCTATTCCGGCCAGTACGGTGCCTATGTGCACGAAAG
CCAGCTCTTCCCGATGCGTCACTACGAGTACGGTAGTCCCACGCGCATGG
AAATGGGCGCCACAACCGGTTCGGTGGCCGGAAACGGAGATGAGTCGGTG
GCCAATGGCGGCAGCTATCAGACGGCGGAACTGCAGACCGCCCAGCAGCA
GCAACTGGCCGACGGCACACTGGTCACCGTCCATGCCCACCAACAGCAGC
AGCAGCAGCAGCAGCAACTCAATGGCAAGTACCTGAGCGCCGAGGAGGCC
AAATACGTGCACCTGCAGTGCCATCAGAGTGGAGGTGGTCTGGAGCTAAG
TCCCGGCGCCAGCTGTCATCTGGTGGAGGCGCAGGGCCAGCACTATGTGA
CCACGGCGACGGGAGGAGCTGCATCCGCGGGCGGCACCAGCAGCGATGAC
AACGACAGCGGCGGCATGCAGACTGTGATCAAGAGCGAGGAGGTCTCCCA
ACAGCAGCAGCAGCAGCAGGGACAGAGCTACGTCCTGCCGCCTTTTTTGC
ACGCAAGCTTTCTAGACCAT

BO07508.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
repo-RA 1839 CG31240-PA 1..1836 17..1852 9180 100 Plus
CG34340-RF 1764 CG34340-PF 187..327 959..1099 255 78.7 Plus
CG34340-RE 1764 CG34340-PE 187..327 959..1099 255 78.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
repo-RA 2996 CG31240-RA 306..2141 17..1852 9180 100 Plus
CG34340-RF 2989 CG34340-RF 776..916 959..1099 255 78.7 Plus
CG34340-RE 2612 CG34340-RE 776..916 959..1099 255 78.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18236497..18237419 17..939 4615 100 Plus
3R 32079331 3R 18237833..18238747 938..1852 4575 100 Plus
2L 23513712 2L 578273..578320 1058..1105 210 95.8 Plus
X 23542271 X 8692709..8692751 1101..1059 185 95.3 Minus
Blast to na_te.dros performed 2014-11-28 00:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2280..2432 1414..1567 118 59.1 Plus

BO07508.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:58 Download gff for BO07508.complete
Subject Subject Range Query Range Percent Splice Strand
repo-RA 1..1839 17..1855 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:56 Download gff for BO07508.complete
Subject Subject Range Query Range Percent Splice Strand
repo-RA 298..2139 10..1852 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:30 Download gff for BO07508.complete
Subject Subject Range Query Range Percent Splice Strand
repo-RA 304..2139 17..1854 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:59 Download gff for BO07508.complete
Subject Subject Range Query Range Percent Splice Strand
repo-RA 298..2139 10..1852 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:50 Download gff for BO07508.complete
Subject Subject Range Query Range Percent Splice Strand
repo-RA 306..2141 17..1854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:50 Download gff for BO07508.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18236497..18237419 17..939 100 -> Plus
3R 18237835..18238747 940..1854 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:30 Download gff for BO07508.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14062219..14063141 17..939 100 -> Plus
arm_3R 14063557..14064469 940..1854 99   Plus

BO07508.pep Sequence

Translation from 16 to 1870

> BO07508.pep
MEHDSFDDPIFGEFGGGPLNPLGAKPLMPTTTAMHPVMLGSVHELCSQQQ
QQQQQQRLPDCNTILPNGGGGGAGSGGAGGSPNYVTKLDFVNKMGCYSPS
QKYEYISAPQKLVEQQQQQQHHHQHHQHYTATPPPSHNGILLHKQSSQQQ
QQQQQQLVGILDYHPLNGKLDYSSSPKDQYEPQQLQHLYGGSPHHLDHLD
HGSDGLLQDSSPVMINGGSAGGKLKKPDEMCSQLEAGGAGVTPPSSSSTV
VNGTTNGTGNANSSSSAGVGIQGAAGTAGGVAAPAAKKDGSSSKKKGDPN
GIKKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQV
WFQNRRAKWRKHEPPRKTGYIKTSTPPTATLNPGTLAPPFTSYPQTTTVT
PPGSMDSWTSYQTPYELTPQFSLLSPAASPYGTYSGQYGAYVHESQLFPM
RHYEYGSPTRMEMGATTGSVAGNGDESVANGGSYQTAELQTAQQQQLADG
TLVTVHAHQQQQQQQQQLNGKYLSAEEAKYVHLQCHQSGGGLELSPGASC
HLVEAQGQHYVTTATGGAASAGGTSSDDNDSGGMQTVIKSEEVSQQQQQQ
QGQSYVLPPFLHASFLDH

BO07508.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
repo-PA 612 CG31240-PA 1..612 1..612 3264 100 Plus
Rx-PB 904 CG10052-PB 450..679 113..405 294 32.5 Plus
al-PA 408 CG3935-PA 17..144 223..363 274 43.3 Plus
prd-PA 590 CG6716-PA 133..455 243..593 256 27.5 Plus
prd-PB 613 CG6716-PB 156..478 243..593 256 27.5 Plus