Clone Sequence Records
BO07511.3prime Sequence
907 bp (839 high quality bases) assembled on 2006-01-06
> BO07511.3prime
ATGGTCTAGAAAGCTTGCGATCCAATGAGTCAACTGCATGGTGCCATCAT
GCGTCCTCTGGGTGTCCATGACGCTCATTTGGCGCACTAATCGCTTCATC
GAGGGCCGATGAACAGGTCGCCCACTTCCACTGGCCGTTGTGTCCAGGGG
CGTACGCTCGTCAATGCGGGGAGCCGGCTCCCGAACCCGTCGACTGTCCC
GCAGCTCCAATTCCACCTCAGAAGCATTGGTGGAGGATCCAGCCAGGACA
TCCAGGTTCTCGTACGACGCAGGTTGAGATAAAATCTCTGGCTTTTGAGC
GCATCTACAGCAATCTTTGAACTGCCAGTTCTTGCCAAACTCCTCGCCCT
CCTCGATGGTCTGCGGCAAGCGATGATGCAGTGTTTCCGGCAGCCGCAAT
CCCGTCATGCCGCCCAGCATCGAAAGGAAGCCCATGATGACCAAGGGCAG
TTTAAGATTGTCCTTTCCCAAGTAGGTAATAAAAGGTATGCCAATGAGAC
CCAATCCTCCAATATAACTGGAAGCACCAATGCCGATACCCCGAACCTGA
GTGGGATAAAGTTCCCCGGCAAAGGGGTATATGATCAGGAAGGAGGCGGA
TAGCAAGGCTTTGGATACTAGATACAGCACAAGGGTCTCATCCACGGCAT
CATCGGGCAACATTACAGTGATCACACAGGCCACGCCACCCAATATCATT
GATAAGCTCAATGGCCATCTTCTGCCCCAGGTATCCATGAAGTACCAGCA
GCACAAATAGCTCGGCAGCTCCACAACAGCCGACAGAAAGAAGCTGACAT
ACTGATTGGTGCCCAGCGCTGGTCCGTAATAACTGAGTCCCAGATAAACC
GTCTCATTGGCAAACCAACTCAGCGTGATTAGGATGGTCTTTAAGCGCAT
ATTGGGG
BO07511.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-PB | 1803 | CG9317-RB | 912..1800 | 907..19 | 4445 | 100 | Minus |
| CG9317-PA | 2025 | CG9317-RA | 1134..2022 | 907..19 | 4445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-RC | 2294 | CG9317-RC | 1164..2052 | 907..19 | 4445 | 100 | Minus |
| CG9317-RA | 2523 | CG9317-RA | 1164..2052 | 907..19 | 4445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20727968..20728367 | 290..689 | 2000 | 100 | Plus |
| 2L | 23513712 | 2L | 20727622..20727892 | 19..289 | 1355 | 100 | Plus |
| 2L | 23513712 | 2L | 20728429..20728647 | 689..907 | 1095 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:14:41 has no hits.
BO07511.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:50 Download gff for
BO07511.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-PA | 1134..2025 | 15..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:57 Download gff for
BO07511.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-PA | 1134..2025 | 15..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:31 Download gff for
BO07511.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 1164..2064 | 6..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:56 Download gff for
BO07511.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 1164..2064 | 6..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:56 Download gff for
BO07511.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20727610..20727892 | 6..289 | 98 | <- | Plus |
| 2L | 20727968..20728366 | 290..688 | 100 | <- | Plus |
| 2L | 20728429..20728647 | 689..907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:31 Download gff for
BO07511.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20728429..20728647 | 689..907 | 100 | | Plus |
| arm_2L | 20727610..20727892 | 6..289 | 98 | <- | Plus |
| arm_2L | 20727968..20728366 | 290..688 | 100 | <- | Plus |
BO07511.5prime Sequence
848 bp (729 high quality bases) assembled on 2006-01-06
> BO07511.5prime
GAAGTTATCAGTCGACATGGCTGATACTCCGGATGACTATTGGTGTCGCA
TCCCGGAGCTACTCGACTTGCCCCTGGAGCAGCGAAAATCGCTGTCCATA
CCCAAGGAACTGGATAACGACGAACTGGTCTACAGCAAATGTTATACCTA
CGGAGTCAACTGGACGCAGCTCCTTGAATCGGGGGAAGAGGATGACCTGA
CGACCATGGAGCCGAATGCCAGTTGGCCACTGATCAAGTGCCCCCAGGGA
TGGGAGTACAACACAAGCGTCGTCTGGTCCTCCATTGTGATTGATTTCGA
TCTAGTGTGCGATCAGGATATTTATCCTACGATTGGATTGGCTGCTCTTA
ATACTGGCGGTCCAGTGGGAGTCTATCTTTTCGGATTACTCAATGATCGT
GGTGGACGAAGGCTCTCCTATTTCGTCTGTTTGGCCACTTTGCTGGCTGG
CAGCCTAATGACTTCGCTGAGCAAGGATTTTTGGACTTGGGCCGGCAGTC
GAGTCATCGTAGGACTGACCATTCCAGCTGTCTACCAGATACCATTTATA
ATATCTCTGGAACTGGTGGGTGAAAACTATCGATCCTTCGTGACTGTGAT
GACGTGCACCTTTTACACTTCGGGCATCATGCTCCTGTCCGGCGTCACTT
ATCTGGAGCGGGATTGGGTGCGCCTCTCCTACATCACATCCCTGCCGTTT
TACGCCTATTTCCTGTACATGTTCGTCATGCCGGAATCACCGAGATGGCT
TTTGATGCGCGGTCGCCTGGAGGAGGCTCTCAAGATTCTGGAGCGCATGG
CAAAGGTCAATGGCAGAGAGTTTCCCGAAGCTGTGCATCTCAAGCTGG
BO07511.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-PB | 1803 | CG9317-RB | 1..832 | 17..848 | 4135 | 99.8 | Plus |
| CG9317-PA | 2025 | CG9317-RA | 223..1054 | 17..848 | 4135 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-RC | 2294 | CG9317-RC | 253..1084 | 17..848 | 4145 | 99.9 | Plus |
| CG9317-RA | 2523 | CG9317-RA | 253..1084 | 17..848 | 4145 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:24:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20728727..20729020 | 848..555 | 1455 | 99.7 | Minus |
| 2L | 23513712 | 2L | 20729076..20729334 | 554..296 | 1295 | 100 | Minus |
| 2L | 23513712 | 2L | 20729483..20729666 | 295..112 | 920 | 100 | Minus |
| 2L | 23513712 | 2L | 20729876..20729972 | 113..17 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:24:36 has no hits.
BO07511.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:51 Download gff for
BO07511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-PA | 214..1054 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:00 Download gff for
BO07511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-PA | 214..1054 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:49 Download gff for
BO07511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 244..1084 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:54:06 Download gff for
BO07511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 244..1084 | 9..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:54:06 Download gff for
BO07511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20729076..20729334 | 296..554 | 100 | <- | Minus |
| 2L | 20729483..20729665 | 113..295 | 100 | <- | Minus |
| 2L | 20729877..20729981 | 9..112 | 96 | | Minus |
| 2L | 20728727..20729020 | 555..848 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:49 Download gff for
BO07511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20728727..20729020 | 555..848 | 99 | <- | Minus |
| arm_2L | 20729076..20729334 | 296..554 | 100 | <- | Minus |
| arm_2L | 20729483..20729665 | 113..295 | 100 | <- | Minus |
| arm_2L | 20729877..20729981 | 9..112 | 96 | | Minus |
BO07511.complete Sequence
1834 bp (1834 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630820
> BO07511.complete
GAAGTTATCAGTCGACATGGCTGATACTCCGGATGACTATTGGTGTCGCA
TCCCGGAGCTACTCGACTTGCCCCTGGAGCAGCGAAAATCGCTGTCCATA
CCCAAGGAACTGGATAACGACGAACTGGTCTACAGCAAATGTTATACCTA
CGGAGTCAACTGGACGCAGCTCCTTGAATCGGGGGAAGAGGATGACCTGA
CGACCATGGAGCCGAATGCCAGTTGGCCACTGATCAAGTGCCCCCAGGGA
TGGGAGTACAACACAAGCGTCGTCTGGTCCTCCATTGTGATTGATTTCGA
TCTAGTGTGCGATCAGGATATTTATCCTACGATTGGATTGGCTGCTCTTA
ATACTGGCGGTCCAGTGGGAGTCTATCTTTTCGGATTACTCAATGATCGT
GGTGGACGAAGGCTCTCCTATTTCGTCTGTTTGGCCACTTTGCTGGCTGG
CAGCCTAATGACTTCGCTGAGCAAGGATTTTTGGACTTGGGCCGGCAGTC
GAGTCATCGTAGGACTGACCATTCCAGCTGTCTACCAGATACCATTTATA
ATATCTCTGGAACTGGTGGGTGAAAACTATCGATCCTTCGTGACTGTGAT
GACGTGCACCTTTTACACTTCGGGCATCATGCTCCTGTCCGGCGTCACTT
ATCTGGAGCGGGATTGGGTGCGCCTCTCCTACATCACATCCCTGCCGTTT
TACGCCTATTTCCTGTACATGTTCGTCATGCCGGAATCACCGAGATGGCT
TTTGATGCGCGGTCGCCTGGAGGAGGCTCTCAAGATTCTGGAGCGCATGG
CAAAGGTCAATGGCAGAGAGTTTCCCGAGGCTGTGCATCTCAAGCTGGAG
GCTCAGATACGACGGGATAAGCTCAAGAAGCAAAAGAAAAAGATGGCCAA
TGTGGGGCTAGCAGATCTCTGTCGCACCCCCAATATGCGCTTAAAGACCA
TCCTAATCACGCTGAGTTGGTTTGCCAATGAGACGGTTTATCTGGGACTC
AGTTATTACGGACCAGCGCTGGGCACCAATCAGTATGTCAGCTTCTTTCT
GTCGGCTGTTGTGGAGCTGCCGAGCTATTTGTGCTGCTGGTACTTCATGG
ATACCTGGGGCAGAAGATGGCCATTGAGCTTATCAATGATATTGGGTGGC
GTGGCCTGTGTGATCACTGTAATGTTGCCCGATGATGCCGTGGATGAGAC
CCTTGTGCTGTATCTAGTATCCAAAGCCTTGCTATCCGCCTCCTTCCTGA
TCATATACCCCTTTGCCGGGGAACTTTATCCCACTCAGGTTCGGGGTATC
GGCATTGGTGCTTCCAGTTATATTGGAGGATTGGGTCTCATTGGCATACC
TTTTATTACCTACTTGGGAAAGGACAATCTTAAACTGCCCTTGGTCATCA
TGGGCTTCCTTTCGATGCTGGGCGGCATGACGGGATTGCGGCTGCCGGAA
ACACTGCATCATCGCTTGCCGCAGACCATCGAGGAGGGCGAGGAGTTTGG
CAAGAACTGGCAGTTCAAAGATTGCTGTAGATGCGCTCAAAAGCCAGAGA
TTTTATCTCAACCTGCGTCGTACGAGAACCTGGATGTCCTGGCTGGATCC
TCCACCAATGCTTCTGAGGTGGAATTGGAGCTGCGGGACAGTCGACGGGT
TCGGGAGCCGGCTCCCCGCATTGACGAGCGTACGCCCCTGGACACAACGG
CCAGTGGAAGTGGGCGACCTGTTCATCGGCCCTCGATGAAGCGATTAGTG
CGCCAAATGAGCGTCATGGACACCCAGAGGACGCATGATGGCACCATGCA
GTTGACTCATTGGATCGCAAGCTTTCTAGACCAT
BO07511.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-RC | 2025 | CG9317-PC | 223..2022 | 17..1816 | 9000 | 100 | Plus |
| CG9317-RA | 2025 | CG9317-PA | 223..2022 | 17..1816 | 9000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-RC | 2294 | CG9317-RC | 253..2052 | 17..1816 | 9000 | 100 | Plus |
| CG9317-RA | 2523 | CG9317-RA | 253..2052 | 17..1816 | 9000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20728429..20729020 | 1146..555 | 2960 | 100 | Minus |
| 2L | 23513712 | 2L | 20727968..20728367 | 1545..1146 | 2000 | 100 | Minus |
| 2L | 23513712 | 2L | 20727622..20727892 | 1816..1546 | 1355 | 100 | Minus |
| 2L | 23513712 | 2L | 20729076..20729334 | 554..296 | 1295 | 100 | Minus |
| 2L | 23513712 | 2L | 20729483..20729666 | 295..112 | 920 | 100 | Minus |
| 2L | 23513712 | 2L | 20729876..20729972 | 113..17 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:22:24 has no hits.
BO07511.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:00 Download gff for
BO07511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 214..2025 | 9..1820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:57 Download gff for
BO07511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 214..2034 | 9..1829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:12 Download gff for
BO07511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 253..2052 | 17..1818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:00 Download gff for
BO07511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 214..2034 | 9..1829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:10 Download gff for
BO07511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 253..2052 | 17..1818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:10 Download gff for
BO07511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20727968..20728366 | 1147..1545 | 100 | <- | Minus |
| 2L | 20727620..20727892 | 1546..1818 | 99 | <- | Minus |
| 2L | 20728429..20729020 | 555..1146 | 100 | <- | Minus |
| 2L | 20729076..20729334 | 296..554 | 100 | <- | Minus |
| 2L | 20729483..20729665 | 113..295 | 100 | <- | Minus |
| 2L | 20729877..20729972 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:12 Download gff for
BO07511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20727620..20727892 | 1546..1818 | 99 | <- | Minus |
| arm_2L | 20727968..20728366 | 1147..1545 | 100 | <- | Minus |
| arm_2L | 20728429..20729020 | 555..1146 | 100 | <- | Minus |
| arm_2L | 20729076..20729334 | 296..554 | 100 | <- | Minus |
| arm_2L | 20729483..20729665 | 113..295 | 100 | <- | Minus |
| arm_2L | 20729877..20729972 | 17..112 | 100 | | Minus |
BO07511.pep Sequence
Translation from 16 to 1834
> BO07511.pep
MADTPDDYWCRIPELLDLPLEQRKSLSIPKELDNDELVYSKCYTYGVNWT
QLLESGEEDDLTTMEPNASWPLIKCPQGWEYNTSVVWSSIVIDFDLVCDQ
DIYPTIGLAALNTGGPVGVYLFGLLNDRGGRRLSYFVCLATLLAGSLMTS
LSKDFWTWAGSRVIVGLTIPAVYQIPFIISLELVGENYRSFVTVMTCTFY
TSGIMLLSGVTYLERDWVRLSYITSLPFYAYFLYMFVMPESPRWLLMRGR
LEEALKILERMAKVNGREFPEAVHLKLEAQIRRDKLKKQKKKMANVGLAD
LCRTPNMRLKTILITLSWFANETVYLGLSYYGPALGTNQYVSFFLSAVVE
LPSYLCCWYFMDTWGRRWPLSLSMILGGVACVITVMLPDDAVDETLVLYL
VSKALLSASFLIIYPFAGELYPTQVRGIGIGASSYIGGLGLIGIPFITYL
GKDNLKLPLVIMGFLSMLGGMTGLRLPETLHHRLPQTIEEGEEFGKNWQF
KDCCRCAQKPEILSQPASYENLDVLAGSSTNASEVELELRDSRRVREPAP
RIDERTPLDTTASGSGRPVHRPSMKRLVRQMSVMDTQRTHDGTMQLTHWI
ASFLDH
BO07511.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:46:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-PC | 674 | CG9317-PC | 75..674 | 1..600 | 3165 | 100 | Plus |
| CG9317-PA | 674 | CG9317-PA | 75..674 | 1..600 | 3165 | 100 | Plus |
| CG3790-PA | 604 | CG3790-PA | 42..557 | 1..510 | 991 | 40.3 | Plus |
| Orct-PB | 548 | CG6331-PB | 75..523 | 41..496 | 727 | 35.1 | Plus |
| Orct-PA | 548 | CG6331-PA | 75..523 | 41..496 | 727 | 35.1 | Plus |
