Clone Sequence Records
BO07515.3prime Sequence
802 bp (755 high quality bases) assembled on 2006-01-06
> BO07515.3prime
ATGGTCTAGAAAGCTTGCCTGAGACGACACCGCCGGCGCCCGTTTGCTTT
TGGCCACATGTGGCAAGGCAACAACGGGCTTGTTGTTGCTGGTGGAGCTG
GTGGTAGTGGTGGTAGTGGTGCTAGTGGTGGTTCCAAATGGCGAACAGGC
GTCACTGCTGCTGCCACCAGACTGCTCCACATTCGTGCCCATCGACGAGT
TAATAAAATTGATGTACTGATGCAACTTGAGGGCGGCTATCAGGGAGCTC
AGATAGTCGTTGATGTTGCCCTTCTGGACCTGCTTGATCTGTCGGGAGAC
ATTTCGATAGACGCGACGCGAGATCTTATTGGATAGCCGTCCAACTGTCT
GTACTGTGTGTAGGACTGGATCCTCGCTGGCGGGAACTGGCATGTCATTT
TCAGAACTCTTGCCATTCTGCACGACGGCATTTTGTTTATCATCATTATC
TTCCTCGACATCCGACTCGCACTTGGGGAAGTAGTATTCAAGGAGGCGCT
CGGCCAGCGCCGTGGTGGTGTCCACTCCGTTGACAGCCAGACTGCCGTAC
TGGGTGGCCAGCACCTCGTTGGCCTTCTGCCAGGCGAGATCCTTCAGCGA
GGCGGCCTTCTGCTGACCAGCTGCCTTGAACTTGACGACGCGCTCCAGAT
GGGGCTGCACCACATCGATCACCTTGCTCTTGGCCTGGTTGTAGATCTCC
TGGGGTGTGTCCTTGATGATCGGCGCCTTTACCTCAAGCTTATCGATGCC
CTTGACCAGGGTCTGGTCCACATAGGCGATGGGTCGGTCCAGTTTGGTGA
CG
BO07515.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9057-PA | 1059 | Lsd-2-RA | 273..1056 | 802..19 | 3920 | 100 | Minus |
CG9057-PC | 1221 | Lsd-2-RC | 844..1218 | 393..19 | 1875 | 100 | Minus |
CG9057-PB | 1008 | Lsd-2-RB | 632..1005 | 392..19 | 1870 | 100 | Minus |
CG9057-PC | 1221 | Lsd-2-RC | 273..631 | 802..444 | 1795 | 100 | Minus |
CG9057-PB | 1008 | Lsd-2-RB | 273..631 | 802..444 | 1795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:01:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-2-RA | 2148 | CG9057-RA | 553..1336 | 802..19 | 3920 | 100 | Minus |
Lsd-2-RF | 4598 | CG9057-RF | 553..963 | 802..392 | 2055 | 100 | Minus |
Lsd-2-RE | 2330 | CG9057-RE | 553..963 | 802..392 | 2055 | 100 | Minus |
Lsd-2-RF | 4598 | CG9057-RF | 1145..1518 | 392..19 | 1870 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:01:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15072275..15072648 | 19..392 | 1870 | 100 | Plus |
X | 23542271 | X | 15073933..15074295 | 440..802 | 1800 | 99.7 | Plus |
X | 23542271 | X | 15073341..15073392 | 393..444 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:01:52 has no hits.
BO07515.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:57 Download gff for
BO07515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-PA | 273..1059 | 18..802 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:09 Download gff for
BO07515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9057-PA | 273..1059 | 18..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:06:07 Download gff for
BO07515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 553..1336 | 19..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:29:44 Download gff for
BO07515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 553..1336 | 19..802 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:29:44 Download gff for
BO07515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15072275..15072648 | 19..392 | 100 | <- | Plus |
X | 15073341..15073391 | 393..443 | 100 | <- | Plus |
X | 15073937..15074295 | 444..802 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:06:07 Download gff for
BO07515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14966308..14966681 | 19..392 | 100 | <- | Plus |
arm_X | 14967374..14967424 | 393..443 | 100 | <- | Plus |
arm_X | 14967970..14968328 | 444..802 | 100 | | Plus |
BO07515.5prime Sequence
988 bp (816 high quality bases) assembled on 2006-01-06
> BO07515.5prime
GAAGTTATCAGTCGACATGGCCAGTGCAGAGCAGAAACACGCCACCGGGA
ACGGAACAACTGGCAATGGAACGGCGATGAACGATGTGGACCAGCCCAAG
GATGCCAAGGACCTTCTGCCGCACCTTGAGTCCCTCGAGAGGATCATCAA
ATTGCCCGTGGTAAATGCGGCATGGGACAAGTCCCAGGATGTCTATGGCA
AAGTAAAAGGCAAAAATCGTGTCTTCGAATGGGCTTTAACGGCGGCCGAG
GATTGTGTGACGCGCGCGGTGACAACGGCGGCTCCCTTCGTCACCAAACT
GGACCGACCCATCGCCTATGTGGACCAGACCCTGGTCAAGGGCATCGATA
AGCTTGAGGTAAAGGCGCCGATCATCAAGGACACACCCCAGGAGATCTAC
AACCAGGCCAAGAGCAAGGTGATCGATGTGGTGCAGCCCCATCTGGAGCG
CGTCGTCAAGTTCAAGGCAGCTGGTCAGCAGAAGGCCGCCTCGCTGAAGG
ATCTCGCCTGGCAGAAGGCCAACGAGGTGCTGGCCACCCAGTACGGCAGT
CTGGCTGTCAACGGAGTGGACACCACCACGGCGCTGGCCGAGCGCCTCCT
TGAATACTACTTCCCCAAGTGCGAGTCGGATGTCGAGGAAGATAATGATG
ATAAACAAAATGCCGTCGTGCAGAATGGCAAGAGTTCTGAAAATGACATG
CCAGTTCCCGCCAGCGAGGATCCAGTCCTACACACAGTACAGACAGTTGG
ACGGCTATCCAATAAGATCTCGCGTCGCGTCTATCGAAATGTCTCCCGAC
AGATCAAGCANGTCCAGAAGGGCAACATCAACGACTATCTGAGCTCCCTG
ATAGCCGCCCTCAAGTTGCATCAGTACATCAATTTTATTAACTCGTCGAT
GGGCACGAATGTGGAGCAGTCTGGTGGCAGCAGCAGTGACGCCTGTTCGC
CATTTGGAACCACACTAGCAACACTACCACCACTACCA
BO07515.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9057-PA | 1059 | Lsd-2-RA | 1..947 | 17..963 | 4716 | 99.8 | Plus |
CG9057-PC | 1221 | Lsd-2-RC | 1..631 | 17..647 | 3155 | 100 | Plus |
CG9057-PB | 1008 | Lsd-2-RB | 1..631 | 17..647 | 3155 | 100 | Plus |
CG9057-PC | 1221 | Lsd-2-RC | 844..1109 | 698..963 | 1311 | 99.6 | Plus |
CG9057-PB | 1008 | Lsd-2-RB | 632..896 | 699..963 | 1306 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:45:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-2-RA | 2148 | CG9057-RA | 280..1253 | 16..988 | 4819 | 99.7 | Plus |
Lsd-2-RF | 4598 | CG9057-RF | 280..963 | 16..699 | 3420 | 100 | Plus |
Lsd-2-RE | 2330 | CG9057-RE | 280..963 | 16..699 | 3420 | 100 | Plus |
Lsd-2-RF | 4598 | CG9057-RF | 1145..1435 | 699..988 | 1404 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15073933..15074376 | 651..208 | 2205 | 99.8 | Minus |
X | 23542271 | X | 15072358..15072648 | 988..699 | 1379 | 99 | Minus |
X | 23542271 | X | 15075747..15075941 | 210..16 | 975 | 100 | Minus |
X | 23542271 | X | 15073341..15073392 | 698..647 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:44:59 has no hits.
BO07515.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:58 Download gff for
BO07515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-PA | 1..972 | 17..987 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:10 Download gff for
BO07515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9057-PA | 1..972 | 17..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:56:12 Download gff for
BO07515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 280..1252 | 16..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:52:28 Download gff for
BO07515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 280..1252 | 16..987 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:52:28 Download gff for
BO07515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15075748..15075941 | 16..209 | 100 | | Minus |
X | 15072359..15072648 | 699..987 | 98 | <- | Minus |
X | 15073341..15073391 | 648..698 | 100 | <- | Minus |
X | 15073937..15074374 | 210..647 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:56:12 Download gff for
BO07515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14966392..14966681 | 699..987 | 98 | <- | Minus |
arm_X | 14967374..14967424 | 648..698 | 100 | <- | Minus |
arm_X | 14967970..14968407 | 210..647 | 100 | <- | Minus |
arm_X | 14969781..14969974 | 16..209 | 100 | | Minus |
BO07515.complete Sequence
1090 bp (1090 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ638651
> BO07515.complete
GAAGTTATCAGTCGACATGGCCAGTGCAGAGCAGAAACACGCCACCGGGA
ACGGAACAACTGGCAATGGAACGGCGATGAACGATGTGGACCAGCCCAAG
GATGCCAAGGACCTTCTGCCGCACCTTGAGTCCCTCGAGAGGATCATCAA
ATTGCCCGTGGTAAATGCGGCATGGGACAAGTCCCAGGATGTCTATGGCA
AAGTAAAAGGCAAAAATCGTGTCTTCGAATGGGCTTTAACGGCGGCCGAG
GATTGTGTGACGCGCGCGGTGACAACGGCGGCTCCCTTCGTCACCAAACT
GGACCGACCCATCGCCTATGTGGACCAGACCCTGGTCAAGGGCATCGATA
AGCTTGAGGTAAAGGCGCCGATCATCAAGGACACACCCCAGGAGATCTAC
AACCAGGCCAAGAGCAAGGTGATCGATGTGGTGCAGCCCCATCTGGAGCG
CGTCGTCAAGTTCAAGGCAGCTGGTCAGCAGAAGGCCGCCTCGCTGAAGG
ATCTCGCCTGGCAGAAGGCCAACGAGGTGCTGGCCACCCAGTACGGCAGT
CTGGCTGTCAACGGAGTGGACACCACCACGGCGCTGGCCGAGCGCCTCCT
TGAATACTACTTCCCCAAGTGCGAGTCGGATGTCGAGGAAGATAATGATG
ATAAACAAAATGCCGTCGTGCAGAATGGCAAGAGTTCTGAAAATGACATG
CCAGTTCCCGCCAGCGAGGATCCAGTCCTACACACAGTACAGACAGTTGG
ACGGCTATCCAATAAGATCTCGCGTCGCGTCTATCGAAATGTCTCCCGAC
AGATCAAGCAGGTCCAGAAGGGCAACATCAACGACTATCTGAGCTCCCTG
ATAGCCGCCCTCAAGTTGCATCAGTACATCAATTTTATTAACTCGTCGAT
GGGCACGAATGTGGAGCAGTCTGGTGGCAGCAGCAGTGACGCCTGTTCGC
CATTTGGAACCACCACTAGCACCACTACCACCACTACCACCAGCTCCACC
AGCAACAACAAGCCCGTTGTTGCCTTGCCACATGTGGCCAAAAGCAAACG
GGCGCCGGCGGTGTCGTCTCAGGCAAGCTTTCTAGACCAT
BO07515.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-2-RA | 1059 | CG9057-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
Lsd-2-RF | 1008 | CG9057-PF | 1..683 | 17..699 | 3415 | 100 | Plus |
Lsd-2-RE | 1008 | CG9057-PE | 1..683 | 17..699 | 3415 | 100 | Plus |
Lsd-2-RF | 1008 | CG9057-PF | 865..1008 | 699..842 | 720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-2-RA | 2148 | CG9057-RA | 280..1336 | 16..1072 | 5285 | 100 | Plus |
Lsd-2-RF | 4598 | CG9057-RF | 280..963 | 16..699 | 3420 | 100 | Plus |
Lsd-2-RE | 2330 | CG9057-RE | 280..963 | 16..699 | 3420 | 100 | Plus |
Lsd-2-RF | 4598 | CG9057-RF | 1145..1518 | 699..1072 | 1870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:45:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15073933..15074376 | 651..208 | 2205 | 99.8 | Minus |
X | 23542271 | X | 15072275..15072648 | 1072..699 | 1870 | 100 | Minus |
X | 23542271 | X | 15075747..15075941 | 210..16 | 975 | 100 | Minus |
X | 23542271 | X | 15073341..15073392 | 698..647 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:45:22 has no hits.
BO07515.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:06 Download gff for
BO07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 1..1059 | 17..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:58 Download gff for
BO07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 263..1319 | 16..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:17 Download gff for
BO07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 281..1336 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:06 Download gff for
BO07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 263..1319 | 16..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:07 Download gff for
BO07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-2-RA | 281..1336 | 17..1074 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:07 Download gff for
BO07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15072273..15072648 | 699..1074 | 99 | <- | Minus |
X | 15073341..15073391 | 648..698 | 100 | <- | Minus |
X | 15073937..15074374 | 210..647 | 100 | <- | Minus |
X | 15075748..15075940 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:17 Download gff for
BO07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14966306..14966681 | 699..1074 | 99 | <- | Minus |
arm_X | 14967374..14967424 | 648..698 | 100 | <- | Minus |
arm_X | 14967970..14968407 | 210..647 | 100 | <- | Minus |
arm_X | 14969781..14969973 | 17..209 | 100 | | Minus |
BO07515.pep Sequence
Translation from 16 to 1090
> BO07515.pep
MASAEQKHATGNGTTGNGTAMNDVDQPKDAKDLLPHLESLERIIKLPVVN
AAWDKSQDVYGKVKGKNRVFEWALTAAEDCVTRAVTTAAPFVTKLDRPIA
YVDQTLVKGIDKLEVKAPIIKDTPQEIYNQAKSKVIDVVQPHLERVVKFK
AAGQQKAASLKDLAWQKANEVLATQYGSLAVNGVDTTTALAERLLEYYFP
KCESDVEEDNDDKQNAVVQNGKSSENDMPVPASEDPVLHTVQTVGRLSNK
ISRRVYRNVSRQIKQVQKGNINDYLSSLIAALKLHQYINFINSSMGTNVE
QSGGSSSDACSPFGTTTSTTTTTTTSSTSNNKPVVALPHVAKSKRAPAVS
SQASFLDH
BO07515.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-2-PA | 352 | CG9057-PA | 1..352 | 1..352 | 1787 | 100 | Plus |
Lsd-2-PB | 335 | CG9057-PB | 1..335 | 1..352 | 1668 | 94.9 | Plus |
Lsd-2-PF | 335 | CG9057-PF | 1..228 | 1..228 | 1163 | 99.6 | Plus |
Lsd-2-PE | 335 | CG9057-PE | 1..228 | 1..228 | 1163 | 99.6 | Plus |
Lsd-2-PD | 318 | CG9057-PD | 1..221 | 1..227 | 1076 | 94.3 | Plus |