Clone BO07515 Report

Search the DGRC for BO07515

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptLsd-2-RA
Protein status:BO07515.pep: validated full length
Sequenced Size:1090

Clone Sequence Records

BO07515.3prime Sequence

802 bp (755 high quality bases) assembled on 2006-01-06

> BO07515.3prime
ATGGTCTAGAAAGCTTGCCTGAGACGACACCGCCGGCGCCCGTTTGCTTT
TGGCCACATGTGGCAAGGCAACAACGGGCTTGTTGTTGCTGGTGGAGCTG
GTGGTAGTGGTGGTAGTGGTGCTAGTGGTGGTTCCAAATGGCGAACAGGC
GTCACTGCTGCTGCCACCAGACTGCTCCACATTCGTGCCCATCGACGAGT
TAATAAAATTGATGTACTGATGCAACTTGAGGGCGGCTATCAGGGAGCTC
AGATAGTCGTTGATGTTGCCCTTCTGGACCTGCTTGATCTGTCGGGAGAC
ATTTCGATAGACGCGACGCGAGATCTTATTGGATAGCCGTCCAACTGTCT
GTACTGTGTGTAGGACTGGATCCTCGCTGGCGGGAACTGGCATGTCATTT
TCAGAACTCTTGCCATTCTGCACGACGGCATTTTGTTTATCATCATTATC
TTCCTCGACATCCGACTCGCACTTGGGGAAGTAGTATTCAAGGAGGCGCT
CGGCCAGCGCCGTGGTGGTGTCCACTCCGTTGACAGCCAGACTGCCGTAC
TGGGTGGCCAGCACCTCGTTGGCCTTCTGCCAGGCGAGATCCTTCAGCGA
GGCGGCCTTCTGCTGACCAGCTGCCTTGAACTTGACGACGCGCTCCAGAT
GGGGCTGCACCACATCGATCACCTTGCTCTTGGCCTGGTTGTAGATCTCC
TGGGGTGTGTCCTTGATGATCGGCGCCTTTACCTCAAGCTTATCGATGCC
CTTGACCAGGGTCTGGTCCACATAGGCGATGGGTCGGTCCAGTTTGGTGA
CG

BO07515.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9057-PA 1059 Lsd-2-RA 273..1056 802..19 3920 100 Minus
CG9057-PC 1221 Lsd-2-RC 844..1218 393..19 1875 100 Minus
CG9057-PB 1008 Lsd-2-RB 632..1005 392..19 1870 100 Minus
CG9057-PC 1221 Lsd-2-RC 273..631 802..444 1795 100 Minus
CG9057-PB 1008 Lsd-2-RB 273..631 802..444 1795 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-2-RA 2148 CG9057-RA 553..1336 802..19 3920 100 Minus
Lsd-2-RF 4598 CG9057-RF 553..963 802..392 2055 100 Minus
Lsd-2-RE 2330 CG9057-RE 553..963 802..392 2055 100 Minus
Lsd-2-RF 4598 CG9057-RF 1145..1518 392..19 1870 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15072275..15072648 19..392 1870 100 Plus
X 23542271 X 15073933..15074295 440..802 1800 99.7 Plus
X 23542271 X 15073341..15073392 393..444 260 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:01:52 has no hits.

BO07515.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:57 Download gff for BO07515.3prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-PA 273..1059 18..802 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:09 Download gff for BO07515.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9057-PA 273..1059 18..802 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:06:07 Download gff for BO07515.3prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 553..1336 19..802 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:29:44 Download gff for BO07515.3prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 553..1336 19..802 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:29:44 Download gff for BO07515.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15072275..15072648 19..392 100 <- Plus
X 15073341..15073391 393..443 100 <- Plus
X 15073937..15074295 444..802 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:06:07 Download gff for BO07515.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14966308..14966681 19..392 100 <- Plus
arm_X 14967374..14967424 393..443 100 <- Plus
arm_X 14967970..14968328 444..802 100   Plus

BO07515.5prime Sequence

988 bp (816 high quality bases) assembled on 2006-01-06

> BO07515.5prime
GAAGTTATCAGTCGACATGGCCAGTGCAGAGCAGAAACACGCCACCGGGA
ACGGAACAACTGGCAATGGAACGGCGATGAACGATGTGGACCAGCCCAAG
GATGCCAAGGACCTTCTGCCGCACCTTGAGTCCCTCGAGAGGATCATCAA
ATTGCCCGTGGTAAATGCGGCATGGGACAAGTCCCAGGATGTCTATGGCA
AAGTAAAAGGCAAAAATCGTGTCTTCGAATGGGCTTTAACGGCGGCCGAG
GATTGTGTGACGCGCGCGGTGACAACGGCGGCTCCCTTCGTCACCAAACT
GGACCGACCCATCGCCTATGTGGACCAGACCCTGGTCAAGGGCATCGATA
AGCTTGAGGTAAAGGCGCCGATCATCAAGGACACACCCCAGGAGATCTAC
AACCAGGCCAAGAGCAAGGTGATCGATGTGGTGCAGCCCCATCTGGAGCG
CGTCGTCAAGTTCAAGGCAGCTGGTCAGCAGAAGGCCGCCTCGCTGAAGG
ATCTCGCCTGGCAGAAGGCCAACGAGGTGCTGGCCACCCAGTACGGCAGT
CTGGCTGTCAACGGAGTGGACACCACCACGGCGCTGGCCGAGCGCCTCCT
TGAATACTACTTCCCCAAGTGCGAGTCGGATGTCGAGGAAGATAATGATG
ATAAACAAAATGCCGTCGTGCAGAATGGCAAGAGTTCTGAAAATGACATG
CCAGTTCCCGCCAGCGAGGATCCAGTCCTACACACAGTACAGACAGTTGG
ACGGCTATCCAATAAGATCTCGCGTCGCGTCTATCGAAATGTCTCCCGAC
AGATCAAGCANGTCCAGAAGGGCAACATCAACGACTATCTGAGCTCCCTG
ATAGCCGCCCTCAAGTTGCATCAGTACATCAATTTTATTAACTCGTCGAT
GGGCACGAATGTGGAGCAGTCTGGTGGCAGCAGCAGTGACGCCTGTTCGC
CATTTGGAACCACACTAGCAACACTACCACCACTACCA

BO07515.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9057-PA 1059 Lsd-2-RA 1..947 17..963 4716 99.8 Plus
CG9057-PC 1221 Lsd-2-RC 1..631 17..647 3155 100 Plus
CG9057-PB 1008 Lsd-2-RB 1..631 17..647 3155 100 Plus
CG9057-PC 1221 Lsd-2-RC 844..1109 698..963 1311 99.6 Plus
CG9057-PB 1008 Lsd-2-RB 632..896 699..963 1306 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-2-RA 2148 CG9057-RA 280..1253 16..988 4819 99.7 Plus
Lsd-2-RF 4598 CG9057-RF 280..963 16..699 3420 100 Plus
Lsd-2-RE 2330 CG9057-RE 280..963 16..699 3420 100 Plus
Lsd-2-RF 4598 CG9057-RF 1145..1435 699..988 1404 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15073933..15074376 651..208 2205 99.8 Minus
X 23542271 X 15072358..15072648 988..699 1379 99 Minus
X 23542271 X 15075747..15075941 210..16 975 100 Minus
X 23542271 X 15073341..15073392 698..647 260 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:44:59 has no hits.

BO07515.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:58 Download gff for BO07515.5prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-PA 1..972 17..987 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:10 Download gff for BO07515.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9057-PA 1..972 17..987 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:56:12 Download gff for BO07515.5prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 280..1252 16..987 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:52:28 Download gff for BO07515.5prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 280..1252 16..987 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:52:28 Download gff for BO07515.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15075748..15075941 16..209 100   Minus
X 15072359..15072648 699..987 98 <- Minus
X 15073341..15073391 648..698 100 <- Minus
X 15073937..15074374 210..647 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:56:12 Download gff for BO07515.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14966392..14966681 699..987 98 <- Minus
arm_X 14967374..14967424 648..698 100 <- Minus
arm_X 14967970..14968407 210..647 100 <- Minus
arm_X 14969781..14969974 16..209 100   Minus

BO07515.complete Sequence

1090 bp (1090 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ638651

> BO07515.complete
GAAGTTATCAGTCGACATGGCCAGTGCAGAGCAGAAACACGCCACCGGGA
ACGGAACAACTGGCAATGGAACGGCGATGAACGATGTGGACCAGCCCAAG
GATGCCAAGGACCTTCTGCCGCACCTTGAGTCCCTCGAGAGGATCATCAA
ATTGCCCGTGGTAAATGCGGCATGGGACAAGTCCCAGGATGTCTATGGCA
AAGTAAAAGGCAAAAATCGTGTCTTCGAATGGGCTTTAACGGCGGCCGAG
GATTGTGTGACGCGCGCGGTGACAACGGCGGCTCCCTTCGTCACCAAACT
GGACCGACCCATCGCCTATGTGGACCAGACCCTGGTCAAGGGCATCGATA
AGCTTGAGGTAAAGGCGCCGATCATCAAGGACACACCCCAGGAGATCTAC
AACCAGGCCAAGAGCAAGGTGATCGATGTGGTGCAGCCCCATCTGGAGCG
CGTCGTCAAGTTCAAGGCAGCTGGTCAGCAGAAGGCCGCCTCGCTGAAGG
ATCTCGCCTGGCAGAAGGCCAACGAGGTGCTGGCCACCCAGTACGGCAGT
CTGGCTGTCAACGGAGTGGACACCACCACGGCGCTGGCCGAGCGCCTCCT
TGAATACTACTTCCCCAAGTGCGAGTCGGATGTCGAGGAAGATAATGATG
ATAAACAAAATGCCGTCGTGCAGAATGGCAAGAGTTCTGAAAATGACATG
CCAGTTCCCGCCAGCGAGGATCCAGTCCTACACACAGTACAGACAGTTGG
ACGGCTATCCAATAAGATCTCGCGTCGCGTCTATCGAAATGTCTCCCGAC
AGATCAAGCAGGTCCAGAAGGGCAACATCAACGACTATCTGAGCTCCCTG
ATAGCCGCCCTCAAGTTGCATCAGTACATCAATTTTATTAACTCGTCGAT
GGGCACGAATGTGGAGCAGTCTGGTGGCAGCAGCAGTGACGCCTGTTCGC
CATTTGGAACCACCACTAGCACCACTACCACCACTACCACCAGCTCCACC
AGCAACAACAAGCCCGTTGTTGCCTTGCCACATGTGGCCAAAAGCAAACG
GGCGCCGGCGGTGTCGTCTCAGGCAAGCTTTCTAGACCAT

BO07515.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-2-RA 1059 CG9057-PA 1..1056 17..1072 5280 100 Plus
Lsd-2-RF 1008 CG9057-PF 1..683 17..699 3415 100 Plus
Lsd-2-RE 1008 CG9057-PE 1..683 17..699 3415 100 Plus
Lsd-2-RF 1008 CG9057-PF 865..1008 699..842 720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-2-RA 2148 CG9057-RA 280..1336 16..1072 5285 100 Plus
Lsd-2-RF 4598 CG9057-RF 280..963 16..699 3420 100 Plus
Lsd-2-RE 2330 CG9057-RE 280..963 16..699 3420 100 Plus
Lsd-2-RF 4598 CG9057-RF 1145..1518 699..1072 1870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15073933..15074376 651..208 2205 99.8 Minus
X 23542271 X 15072275..15072648 1072..699 1870 100 Minus
X 23542271 X 15075747..15075941 210..16 975 100 Minus
X 23542271 X 15073341..15073392 698..647 260 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:45:22 has no hits.

BO07515.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:06 Download gff for BO07515.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 1..1059 17..1073 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:58 Download gff for BO07515.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 263..1319 16..1072 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:17 Download gff for BO07515.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 281..1336 17..1074 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:06 Download gff for BO07515.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 263..1319 16..1072 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:07 Download gff for BO07515.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-2-RA 281..1336 17..1074 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:07 Download gff for BO07515.complete
Subject Subject Range Query Range Percent Splice Strand
X 15072273..15072648 699..1074 99 <- Minus
X 15073341..15073391 648..698 100 <- Minus
X 15073937..15074374 210..647 100 <- Minus
X 15075748..15075940 17..209 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:17 Download gff for BO07515.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14966306..14966681 699..1074 99 <- Minus
arm_X 14967374..14967424 648..698 100 <- Minus
arm_X 14967970..14968407 210..647 100 <- Minus
arm_X 14969781..14969973 17..209 100   Minus

BO07515.pep Sequence

Translation from 16 to 1090

> BO07515.pep
MASAEQKHATGNGTTGNGTAMNDVDQPKDAKDLLPHLESLERIIKLPVVN
AAWDKSQDVYGKVKGKNRVFEWALTAAEDCVTRAVTTAAPFVTKLDRPIA
YVDQTLVKGIDKLEVKAPIIKDTPQEIYNQAKSKVIDVVQPHLERVVKFK
AAGQQKAASLKDLAWQKANEVLATQYGSLAVNGVDTTTALAERLLEYYFP
KCESDVEEDNDDKQNAVVQNGKSSENDMPVPASEDPVLHTVQTVGRLSNK
ISRRVYRNVSRQIKQVQKGNINDYLSSLIAALKLHQYINFINSSMGTNVE
QSGGSSSDACSPFGTTTSTTTTTTTSSTSNNKPVVALPHVAKSKRAPAVS
SQASFLDH

BO07515.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-2-PA 352 CG9057-PA 1..352 1..352 1787 100 Plus
Lsd-2-PB 335 CG9057-PB 1..335 1..352 1668 94.9 Plus
Lsd-2-PF 335 CG9057-PF 1..228 1..228 1163 99.6 Plus
Lsd-2-PE 335 CG9057-PE 1..228 1..228 1163 99.6 Plus
Lsd-2-PD 318 CG9057-PD 1..221 1..227 1076 94.3 Plus