Clone Sequence Records
BO07516.3prime Sequence
885 bp (809 high quality bases) assembled on 2006-01-06
> BO07516.3prime
ATGGTCTAGAAAGCTTGCTGAAGCGCTGTTCGTCTCACCGTTGCTGTCGT
GGAAGTTGGTGCCATTGACGATGAAGGAGGTACCCAGGCCGTACAGGTGT
CCGGAGTACTTCGCATGGTCGATGTTGTCCTCGAAGAACATCTCACGCAT
TTTGAAGAAGGCCATGCCCGTCAGCAGAGCATCCGAGCCGGCCTGATGCT
GGGGGCCCACGCGCCGCAGTTCCAGCTGATCGGCAACCTCCTGCAGGCCG
CCTTTCAGGTTCTTGCACGACTTCATCAGATACTTGATGTCGAAGATGTT
GGGAAAGTAGATGTGCAGCAGATCGAAAAATTCAGATTCGTCCGGGGGCA
GGTTCTGATCGGTGAGCAGCTTTAGAAGGTAGCCAAAATCGTAGCCGGAG
TGGAAGCACAGCCACTTGATGTTTTCCACCAGCACGATGCCAGAGCTCAT
CAGCAGTTCGGCGAAGTCGATGGGATCGATGCCATCCTCCTCGTGCTTCT
TGAACTGAATTCCGGAGTTCTGCAGCAGATCGATCGAGTCCTGCGCATAC
ATGTCCTCGCTCAGGTTAAACTTGAAGTTGAACTGCCAGGTGGAGTAGCC
GGGTGGTGTCTTTCCATCGTCGTCCATGAAGGTAAGGCCCAATTGGATAA
TCCGCAGCAGATCGACATTACAGCGCAGCAGCTGGTAATGATAGTCCGCC
GTGGAGCGGAACTCGCCGACTGGACGTGCTACCACGCCTGGAAACTCGGT
GTCCATGGCCACATAGTGGTACTTCTGCACCACTTTCCGTATGGTGCGGA
ACTCCTCCTCCAGGTTTTGCTTCCACACATCGCGGATGCCGCACTCCTCG
TTGCTGGGTATGTGGGCATGTGGCGCGCCACTGAT
BO07516.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5684-PC | 882 | CG5684-RC | 13..879 | 885..19 | 4335 | 100 | Minus |
CG5684-PA | 894 | CG5684-RA | 25..891 | 885..19 | 4335 | 100 | Minus |
CG5684-PB | 882 | CG5684-RB | 13..879 | 885..19 | 4335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-RB | 1893 | CG5684-RB | 551..1417 | 885..19 | 4335 | 100 | Minus |
Pop2-RA | 1688 | CG5684-RA | 346..1212 | 885..19 | 4335 | 100 | Minus |
Pop2-RC | 1827 | CG5684-RC | 485..1351 | 885..19 | 4335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12000273..12000692 | 142..561 | 2100 | 100 | Plus |
3L | 28110227 | 3L | 12000750..12001075 | 560..885 | 1630 | 100 | Plus |
3L | 28110227 | 3L | 11998874..11998998 | 19..143 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:01:31 has no hits.
BO07516.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:59 Download gff for
BO07516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PC | 13..882 | 16..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:11 Download gff for
BO07516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PB | 13..882 | 16..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:45:10 Download gff for
BO07516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RC | 485..1351 | 19..885 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:59:28 Download gff for
BO07516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RC | 485..1351 | 19..885 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:59:28 Download gff for
BO07516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11998874..11998996 | 19..141 | 100 | <- | Plus |
3L | 12000273..12000690 | 142..559 | 100 | <- | Plus |
3L | 12000750..12001075 | 560..885 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:45:10 Download gff for
BO07516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11991974..11992096 | 19..141 | 100 | <- | Plus |
arm_3L | 11993373..11993790 | 142..559 | 100 | <- | Plus |
arm_3L | 11993850..11994175 | 560..885 | 100 | | Plus |
BO07516.5prime Sequence
922 bp (821 high quality bases) assembled on 2006-01-06
> BO07516.5prime
GAAGTTATCAGTCGACATGAAATGGACAATGCCCTCGGCCATCAGTGGCG
CGCCACATGCCCACATACCCAGCAACGAGGAGTGCGGCATCCGCGATGTG
TGGAAGCAAAACCTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGTGCA
GAAGTACCACTATGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAGCAC
GTCCAGTCGGCGAGTTCCGCTCCACGGCGGACTATCATTACCAGCTGCTG
CGCTGTAATGTCGATCTGCTGCGGATTATCCAATTGGGCCTTACCTTCAT
GGACGACGATGGAAAGACACCACCCGGCTACTCCACCTGGCAGTTCAACT
TCAAGTTTAACCTGAGCGAGGACATGTATGCGCAGGACTCGATCGATCTG
CTGCAGAACTCCGGAATTCAGTTCAAGAAGCACGAGGAGGATGGCATCGA
TCCCATCGACTTCGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGGTGG
AAAACATCAAGTGGCTGTGCTTCCACTCCGGCTACGATTTTGGCTACCTT
CTAAAGCTGCTCACCGATCAGAACCTGCCCCCGGACGAATCTGAATTTTT
CGATCTGCTGCACATCTACTTTCCCAACATCTTCGACATCAAGTATCTGA
TGAAGTCGTGCAAGAACCTGAAAGGCGGCCTGCAGGAGGTTGCCGATCAG
CTGGAACTGCGGCGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGCTCT
GCTGACGGGCATGGCCTTCTTCAAATGCGTGAGATGTTCTTCGAGGACAA
CATCGACCATGCGAAGTACTCCGGACACCTGTACGGCCTGGGTACCTCCT
TCATCGTCAATGGCACCAACTTCCACGACAGCAACGGTGAGACGAACAGC
GCTTCAGCAAGCTTTCTAGACC
BO07516.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5684-PA | 894 | CG5684-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
CG5684-PC | 882 | CG5684-RC | 1..747 | 29..775 | 3735 | 100 | Plus |
CG5684-PB | 882 | CG5684-RB | 1..747 | 29..775 | 3735 | 100 | Plus |
CG5684-PA | 894 | CG5684-RA | 758..891 | 773..906 | 670 | 100 | Plus |
CG5684-PC | 882 | CG5684-RC | 746..879 | 773..906 | 670 | 100 | Plus |
CG5684-PB | 882 | CG5684-RB | 746..879 | 773..906 | 670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-RA | 1688 | CG5684-RA | 322..1212 | 17..906 | 4430 | 99.9 | Plus |
Pop2-RB | 1893 | CG5684-RB | 536..1417 | 26..906 | 4385 | 99.9 | Plus |
Pop2-RC | 1827 | CG5684-RC | 470..1351 | 26..906 | 4385 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12000282..12000692 | 775..365 | 2055 | 100 | Minus |
3L | 28110227 | 3L | 12000750..12001091 | 366..25 | 1710 | 100 | Minus |
3L | 28110227 | 3L | 11998874..11998998 | 906..782 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:02:07 has no hits.
BO07516.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:00 Download gff for
BO07516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PA | 1..894 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:14 Download gff for
BO07516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PA | 1..894 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:06:09 Download gff for
BO07516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RA | 322..1212 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:30:27 Download gff for
BO07516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RA | 322..1212 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:30:27 Download gff for
BO07516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11998874..11998996 | 784..906 | 100 | <- | Minus |
3L | 12000273..12000690 | 367..783 | 99 | <- | Minus |
3L | 12000750..12001090 | 22..366 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:06:09 Download gff for
BO07516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11991974..11992096 | 784..906 | 100 | <- | Minus |
arm_3L | 11993373..11993790 | 367..783 | 99 | <- | Minus |
arm_3L | 11993850..11994190 | 22..366 | 98 | <- | Minus |
BO07516.complete Sequence
925 bp (925 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630821
> BO07516.complete
GAAGTTATCAGTCGACATGAAATGGACAATGCCCTCGGCCATCAGTGGCG
CGCCACATGCCCACATACCCAGCAACGAGGAGTGCGGCATCCGCGATGTG
TGGAAGCAAAACCTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGTGCA
GAAGTACCACTATGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAGCAC
GTCCAGTCGGCGAGTTCCGCTCCACGGCGGACTATCATTACCAGCTGCTG
CGCTGTAATGTCGATCTGCTGCGGATTATCCAATTGGGCCTTACCTTCAT
GGACGACGATGGAAAGACACCACCCGGCTACTCCACCTGGCAGTTCAACT
TCAAGTTTAACCTGAGCGAGGACATGTATGCGCAGGACTCGATCGATCTG
CTGCAGAACTCCGGAATTCAGTTCAAGAAGCACGAGGAGGATGGCATCGA
TCCCATCGACTTCGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGGTGG
AAAACATCAAGTGGCTGTGCTTCCACTCCGGCTACGATTTTGGCTACCTT
CTAAAGCTGCTCACCGATCAGAACCTGCCCCCGGACGAATCTGAATTTTT
CGATCTGCTGCACATCTACTTTCCCAACATCTTCGACATCAAGTATCTGA
TGAAGTCGTGCAAGAACCTGAAAGGCGGCCTGCAGGAGGTTGCCGATCAG
CTGGAACTGCGGCGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGCTCT
GCTGACGGGCATGGCCTTCTTCAAAATGCGTGAGATGTTCTTCGAGGACA
ACATCGACCATGCGAAGTACTCCGGACACCTGTACGGCCTGGGTACCTCC
TTCATCGTCAATGGCACCAACTTCCACGACAGCAACGGTGAGACGAACAG
CGCTTCAGCAAGCTTTCTAGACCAT
BO07516.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-RA | 894 | CG5684-PA | 1..891 | 17..907 | 4455 | 100 | Plus |
Pop2-RB | 882 | CG5684-PB | 1..879 | 29..907 | 4395 | 100 | Plus |
Pop2-RC | 882 | CG5684-PC | 1..879 | 29..907 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-RA | 1688 | CG5684-RA | 322..1212 | 17..907 | 4455 | 100 | Plus |
Pop2-RB | 1893 | CG5684-RB | 536..1417 | 26..907 | 4410 | 100 | Plus |
Pop2-RC | 1827 | CG5684-RC | 470..1351 | 26..907 | 4410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12000273..12000692 | 784..365 | 2100 | 100 | Minus |
3L | 28110227 | 3L | 12000750..12001091 | 366..25 | 1710 | 100 | Minus |
3L | 28110227 | 3L | 11998874..11998998 | 907..783 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:46:36 has no hits.
BO07516.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:19 Download gff for
BO07516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:03 Download gff for
BO07516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RA | 320..1210 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:34 Download gff for
BO07516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RA | 322..1212 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:19 Download gff for
BO07516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RA | 320..1210 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:44 Download gff for
BO07516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RA | 322..1212 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:44 Download gff for
BO07516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11998871..11998996 | 785..909 | 98 | <- | Minus |
3L | 12000273..12000690 | 367..784 | 100 | <- | Minus |
3L | 12000750..12001091 | 25..366 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:34 Download gff for
BO07516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11991971..11992096 | 785..909 | 98 | <- | Minus |
arm_3L | 11993373..11993790 | 367..784 | 100 | <- | Minus |
arm_3L | 11993850..11994191 | 25..366 | 100 | | Minus |
BO07516.pep Sequence
Translation from 16 to 925
> BO07516.pep
MKWTMPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYV
AMDTEFPGVVARPVGEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGK
TPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFA
ELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHI
YFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMA
FFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSASASF
LDH
BO07516.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-PA | 297 | CG5684-PA | 1..297 | 1..297 | 1594 | 100 | Plus |
Pop2-PB | 293 | CG5684-PB | 1..293 | 5..297 | 1568 | 100 | Plus |
Pop2-PC | 293 | CG5684-PC | 1..293 | 5..297 | 1568 | 100 | Plus |
Pop2-PE | 361 | CG5684-PE | 1..257 | 1..257 | 1372 | 99.6 | Plus |
Pop2-PD | 357 | CG5684-PD | 1..253 | 5..257 | 1346 | 99.6 | Plus |