Clone BO07516 Report

Search the DGRC for BO07516

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptPop2-RA
Protein status:BO07516.pep: validated full length
Sequenced Size:925

Clone Sequence Records

BO07516.3prime Sequence

885 bp (809 high quality bases) assembled on 2006-01-06

> BO07516.3prime
ATGGTCTAGAAAGCTTGCTGAAGCGCTGTTCGTCTCACCGTTGCTGTCGT
GGAAGTTGGTGCCATTGACGATGAAGGAGGTACCCAGGCCGTACAGGTGT
CCGGAGTACTTCGCATGGTCGATGTTGTCCTCGAAGAACATCTCACGCAT
TTTGAAGAAGGCCATGCCCGTCAGCAGAGCATCCGAGCCGGCCTGATGCT
GGGGGCCCACGCGCCGCAGTTCCAGCTGATCGGCAACCTCCTGCAGGCCG
CCTTTCAGGTTCTTGCACGACTTCATCAGATACTTGATGTCGAAGATGTT
GGGAAAGTAGATGTGCAGCAGATCGAAAAATTCAGATTCGTCCGGGGGCA
GGTTCTGATCGGTGAGCAGCTTTAGAAGGTAGCCAAAATCGTAGCCGGAG
TGGAAGCACAGCCACTTGATGTTTTCCACCAGCACGATGCCAGAGCTCAT
CAGCAGTTCGGCGAAGTCGATGGGATCGATGCCATCCTCCTCGTGCTTCT
TGAACTGAATTCCGGAGTTCTGCAGCAGATCGATCGAGTCCTGCGCATAC
ATGTCCTCGCTCAGGTTAAACTTGAAGTTGAACTGCCAGGTGGAGTAGCC
GGGTGGTGTCTTTCCATCGTCGTCCATGAAGGTAAGGCCCAATTGGATAA
TCCGCAGCAGATCGACATTACAGCGCAGCAGCTGGTAATGATAGTCCGCC
GTGGAGCGGAACTCGCCGACTGGACGTGCTACCACGCCTGGAAACTCGGT
GTCCATGGCCACATAGTGGTACTTCTGCACCACTTTCCGTATGGTGCGGA
ACTCCTCCTCCAGGTTTTGCTTCCACACATCGCGGATGCCGCACTCCTCG
TTGCTGGGTATGTGGGCATGTGGCGCGCCACTGAT

BO07516.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5684-PC 882 CG5684-RC 13..879 885..19 4335 100 Minus
CG5684-PA 894 CG5684-RA 25..891 885..19 4335 100 Minus
CG5684-PB 882 CG5684-RB 13..879 885..19 4335 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-RB 1893 CG5684-RB 551..1417 885..19 4335 100 Minus
Pop2-RA 1688 CG5684-RA 346..1212 885..19 4335 100 Minus
Pop2-RC 1827 CG5684-RC 485..1351 885..19 4335 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12000273..12000692 142..561 2100 100 Plus
3L 28110227 3L 12000750..12001075 560..885 1630 100 Plus
3L 28110227 3L 11998874..11998998 19..143 625 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:01:31 has no hits.

BO07516.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:20:59 Download gff for BO07516.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5684-PC 13..882 16..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:11 Download gff for BO07516.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5684-PB 13..882 16..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:45:10 Download gff for BO07516.3prime
Subject Subject Range Query Range Percent Splice Strand
Pop2-RC 485..1351 19..885 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:59:28 Download gff for BO07516.3prime
Subject Subject Range Query Range Percent Splice Strand
Pop2-RC 485..1351 19..885 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:59:28 Download gff for BO07516.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11998874..11998996 19..141 100 <- Plus
3L 12000273..12000690 142..559 100 <- Plus
3L 12000750..12001075 560..885 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:45:10 Download gff for BO07516.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11991974..11992096 19..141 100 <- Plus
arm_3L 11993373..11993790 142..559 100 <- Plus
arm_3L 11993850..11994175 560..885 100   Plus

BO07516.5prime Sequence

922 bp (821 high quality bases) assembled on 2006-01-06

> BO07516.5prime
GAAGTTATCAGTCGACATGAAATGGACAATGCCCTCGGCCATCAGTGGCG
CGCCACATGCCCACATACCCAGCAACGAGGAGTGCGGCATCCGCGATGTG
TGGAAGCAAAACCTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGTGCA
GAAGTACCACTATGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAGCAC
GTCCAGTCGGCGAGTTCCGCTCCACGGCGGACTATCATTACCAGCTGCTG
CGCTGTAATGTCGATCTGCTGCGGATTATCCAATTGGGCCTTACCTTCAT
GGACGACGATGGAAAGACACCACCCGGCTACTCCACCTGGCAGTTCAACT
TCAAGTTTAACCTGAGCGAGGACATGTATGCGCAGGACTCGATCGATCTG
CTGCAGAACTCCGGAATTCAGTTCAAGAAGCACGAGGAGGATGGCATCGA
TCCCATCGACTTCGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGGTGG
AAAACATCAAGTGGCTGTGCTTCCACTCCGGCTACGATTTTGGCTACCTT
CTAAAGCTGCTCACCGATCAGAACCTGCCCCCGGACGAATCTGAATTTTT
CGATCTGCTGCACATCTACTTTCCCAACATCTTCGACATCAAGTATCTGA
TGAAGTCGTGCAAGAACCTGAAAGGCGGCCTGCAGGAGGTTGCCGATCAG
CTGGAACTGCGGCGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGCTCT
GCTGACGGGCATGGCCTTCTTCAAATGCGTGAGATGTTCTTCGAGGACAA
CATCGACCATGCGAAGTACTCCGGACACCTGTACGGCCTGGGTACCTCCT
TCATCGTCAATGGCACCAACTTCCACGACAGCAACGGTGAGACGAACAGC
GCTTCAGCAAGCTTTCTAGACC

BO07516.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5684-PA 894 CG5684-RA 1..759 17..775 3795 100 Plus
CG5684-PC 882 CG5684-RC 1..747 29..775 3735 100 Plus
CG5684-PB 882 CG5684-RB 1..747 29..775 3735 100 Plus
CG5684-PA 894 CG5684-RA 758..891 773..906 670 100 Plus
CG5684-PC 882 CG5684-RC 746..879 773..906 670 100 Plus
CG5684-PB 882 CG5684-RB 746..879 773..906 670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-RA 1688 CG5684-RA 322..1212 17..906 4430 99.9 Plus
Pop2-RB 1893 CG5684-RB 536..1417 26..906 4385 99.9 Plus
Pop2-RC 1827 CG5684-RC 470..1351 26..906 4385 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12000282..12000692 775..365 2055 100 Minus
3L 28110227 3L 12000750..12001091 366..25 1710 100 Minus
3L 28110227 3L 11998874..11998998 906..782 625 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:02:07 has no hits.

BO07516.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:00 Download gff for BO07516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5684-PA 1..894 17..909 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:14 Download gff for BO07516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5684-PA 1..894 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:06:09 Download gff for BO07516.5prime
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 322..1212 17..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:30:27 Download gff for BO07516.5prime
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 322..1212 17..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:30:27 Download gff for BO07516.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11998874..11998996 784..906 100 <- Minus
3L 12000273..12000690 367..783 99 <- Minus
3L 12000750..12001090 22..366 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:06:09 Download gff for BO07516.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11991974..11992096 784..906 100 <- Minus
arm_3L 11993373..11993790 367..783 99 <- Minus
arm_3L 11993850..11994190 22..366 98 <- Minus

BO07516.complete Sequence

925 bp (925 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630821

> BO07516.complete
GAAGTTATCAGTCGACATGAAATGGACAATGCCCTCGGCCATCAGTGGCG
CGCCACATGCCCACATACCCAGCAACGAGGAGTGCGGCATCCGCGATGTG
TGGAAGCAAAACCTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGTGCA
GAAGTACCACTATGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAGCAC
GTCCAGTCGGCGAGTTCCGCTCCACGGCGGACTATCATTACCAGCTGCTG
CGCTGTAATGTCGATCTGCTGCGGATTATCCAATTGGGCCTTACCTTCAT
GGACGACGATGGAAAGACACCACCCGGCTACTCCACCTGGCAGTTCAACT
TCAAGTTTAACCTGAGCGAGGACATGTATGCGCAGGACTCGATCGATCTG
CTGCAGAACTCCGGAATTCAGTTCAAGAAGCACGAGGAGGATGGCATCGA
TCCCATCGACTTCGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGGTGG
AAAACATCAAGTGGCTGTGCTTCCACTCCGGCTACGATTTTGGCTACCTT
CTAAAGCTGCTCACCGATCAGAACCTGCCCCCGGACGAATCTGAATTTTT
CGATCTGCTGCACATCTACTTTCCCAACATCTTCGACATCAAGTATCTGA
TGAAGTCGTGCAAGAACCTGAAAGGCGGCCTGCAGGAGGTTGCCGATCAG
CTGGAACTGCGGCGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGCTCT
GCTGACGGGCATGGCCTTCTTCAAAATGCGTGAGATGTTCTTCGAGGACA
ACATCGACCATGCGAAGTACTCCGGACACCTGTACGGCCTGGGTACCTCC
TTCATCGTCAATGGCACCAACTTCCACGACAGCAACGGTGAGACGAACAG
CGCTTCAGCAAGCTTTCTAGACCAT

BO07516.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-RA 894 CG5684-PA 1..891 17..907 4455 100 Plus
Pop2-RB 882 CG5684-PB 1..879 29..907 4395 100 Plus
Pop2-RC 882 CG5684-PC 1..879 29..907 4395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-RA 1688 CG5684-RA 322..1212 17..907 4455 100 Plus
Pop2-RB 1893 CG5684-RB 536..1417 26..907 4410 100 Plus
Pop2-RC 1827 CG5684-RC 470..1351 26..907 4410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12000273..12000692 784..365 2100 100 Minus
3L 28110227 3L 12000750..12001091 366..25 1710 100 Minus
3L 28110227 3L 11998874..11998998 907..783 625 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:46:36 has no hits.

BO07516.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:19 Download gff for BO07516.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 1..894 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:03 Download gff for BO07516.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 320..1210 17..907 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:34 Download gff for BO07516.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 322..1212 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:19 Download gff for BO07516.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 320..1210 17..907 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:44 Download gff for BO07516.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 322..1212 17..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:44 Download gff for BO07516.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11998871..11998996 785..909 98 <- Minus
3L 12000273..12000690 367..784 100 <- Minus
3L 12000750..12001091 25..366 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:34 Download gff for BO07516.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11991971..11992096 785..909 98 <- Minus
arm_3L 11993373..11993790 367..784 100 <- Minus
arm_3L 11993850..11994191 25..366 100   Minus

BO07516.pep Sequence

Translation from 16 to 925

> BO07516.pep
MKWTMPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYV
AMDTEFPGVVARPVGEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGK
TPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFA
ELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHI
YFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMA
FFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSASASF
LDH

BO07516.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-PA 297 CG5684-PA 1..297 1..297 1594 100 Plus
Pop2-PB 293 CG5684-PB 1..293 5..297 1568 100 Plus
Pop2-PC 293 CG5684-PC 1..293 5..297 1568 100 Plus
Pop2-PE 361 CG5684-PE 1..257 1..257 1372 99.6 Plus
Pop2-PD 357 CG5684-PD 1..253 5..257 1346 99.6 Plus