Clone Sequence Records
BO07517.3prime Sequence
869 bp (852 high quality bases) assembled on 2006-01-06
> BO07517.3prime
ATGGTCTAGAAAGCTTGCATTCGGACTAGGCGCACCGACCAGGTACCACG
CATTCCTGGCCTTCACCGCTGTGTTCCGCACCAGACGCTTGGGATCATCC
AAGGCGGCGGCCAGGGCCAGAGTAACATCGACTTTGTGGGGCAACAGGAC
GAAGGTAGGATACTTTGTCACATCGTAGAGCAGCTGCAGCGCCGCAATTC
GCACTTGCATGGTATGCTGAGCCTTGTATTTCGACAGCTCCAGACAGCTG
GGTATGAGGTGGGCCAAATGCCCTTGGAAATACGTGTCCTGCTGCGCCAC
AAACTTTTCACAGATGCCCAATGCAATGCACAGCGACTGCGCCTCGTTGT
GCTCCTCCAAGCTCTTGAAAAGCAGCGGACCGAGCTGCTCAATGTTTAGC
TTAATAACCGCCTGTGGCGTGGCTTTCAGTACGTAGACAAAAGCCTTCAA
GTGGTGCACACAGTAGTTGGCAAGTTTGCTGCCCATTTTTCCCATGATAG
TGTGGAAAAGCTTCTGCTTGTAGAGGAATTTAACGACAGGCAAATCCAAT
TCTGGGTACTCGGCGGCAATGATGTCGAATCCCAAGGCAGCGGCAGTGCT
CAAACTGGGATGTTTTAGTAGATCCGAGAGATCACCAACAACATCGGCAG
CCTCATCGAATCCTGCGACTACTAGGCCCTTCCCCACCCATGCAAGGATC
TCCACCGCCCGAACATCGCCCTTTTTAATAGCCACCTTCAGTTGCTCCGT
GATTTTTTTGACCTTCCTTAGATTAGCTGGGTTCGACTCCATCTTGTTGA
CCATGCTACAGAGCAGGTGGTGAGCGATTACACGCAACTGTTCGTTGTCC
GAATTAAGCGAAAGCTGCG
BO07517.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12005-PB | 2880 | Mms19-RB | 2027..2877 | 869..19 | 4255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mms19-RB | 3233 | CG12005-RB | 2126..2976 | 869..19 | 4255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:58:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5235306..5235728 | 630..208 | 2115 | 100 | Minus |
3R | 32079331 | 3R | 5235000..5235238 | 869..631 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 5235842..5236031 | 208..19 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 21:58:37 has no hits.
BO07517.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:01 Download gff for
BO07517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12005-PA | 2027..2880 | 18..869 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:15 Download gff for
BO07517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12005-PB | 2027..2880 | 18..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:47 Download gff for
BO07517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mms19-RB | 2126..2980 | 13..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:04 Download gff for
BO07517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mms19-RB | 2126..2980 | 13..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:04 Download gff for
BO07517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5235843..5236033 | 14..207 | 97 | -> | Minus |
3R | 5235000..5235238 | 631..869 | 100 | -> | Minus |
3R | 5235306..5235728 | 208..630 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:47 Download gff for
BO07517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1060722..1060960 | 631..869 | 100 | -> | Minus |
arm_3R | 1061028..1061450 | 208..630 | 100 | -> | Minus |
arm_3R | 1061565..1061755 | 14..207 | 97 | -> | Minus |
BO07517.5prime Sequence
847 bp (824 high quality bases) assembled on 2006-01-06
> BO07517.5prime
GAAGTTATCAGTCGACATGACAACGCCCACGCGCGCCACCCTGGAAAAGG
CTCTGAAAAGCGACCAGAAGCTTGTGAATTCCGCCACACAGATAGCCAAG
GATCTGACCGCCAAGGCATATGACATATCTGCTCTGGCCGAGGCACTGGG
CTTCGCCCTGTCCTCTCCGGACATGGAGGAGCGTGTGGCCGGAACCAACT
TGCTCTCCGCCGTGTTGATAGCACTGCCCCAGGATCTGCTGCAAGAGCGG
CAGCTGGAGTTCCTCAGCACCTTTTACATGGACCGCCTGCGCGACCATCA
CAACGTAATGCCAGCCATTATCGATGGAATCGACGCCCTGGTTCACATGA
AAGCTCTACCGCGCGCCCAGATTCCCCAGATTCTGCAGTCATTCTTCGAG
CACACCACCTGCCAGTCGCAGACGCGGAGCGACCGCACCAAGCTGTTCCA
CATTTTCCAGTACTTGACGGAAAACTTCCAGGACGAGCTGCAAGCGATGG
CCGGTGACTTCGTCTACGGCCTGATCAATTCCATTGACGGCGAGCGTGAC
CCCCGCAACCTTGACATCATTTTCAGCTTCATGCCCGAGTTCTTGTCAAC
GTATCCGCTGCTGCATTTGGCCGAAGAGATGTTTGAGATCTTTGCGTGTT
ACTTTCCAATCGACTTTAATCCCAGCAAGCAGGATCCAGCGGCCATAACC
CGTGATGAATTGTCCAAGAAGTTGACTAACTGCCTGGTAGCCAACAACGA
ATTCGCTGAGGGCACAGTGGTACTGGCCATAGAAAAGCTGGAGAGTGAGT
TGCTGGTTGCCAAACTGGACTCCATAGAACTGCTGCACAAAGCTGCC
BO07517.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12005-PB | 2880 | Mms19-RB | 1..831 | 17..847 | 4130 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mms19-RB | 3233 | CG12005-RB | 100..930 | 17..847 | 4140 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:02:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5232790..5233174 | 101..485 | 1925 | 100 | Plus |
3R | 32079331 | 3R | 5233384..5233734 | 485..835 | 1755 | 100 | Plus |
3R | 32079331 | 3R | 5232642..5232726 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:02:45 has no hits.
BO07517.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:02 Download gff for
BO07517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12005-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:17 Download gff for
BO07517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12005-PB | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:06:14 Download gff for
BO07517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mms19-RB | 100..930 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:32:26 Download gff for
BO07517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mms19-RB | 100..930 | 17..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:32:26 Download gff for
BO07517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5232791..5233174 | 102..485 | 100 | -> | Plus |
3R | 5233385..5233738 | 486..840 | 99 | | Plus |
3R | 5232642..5232726 | 17..101 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:06:14 Download gff for
BO07517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1058364..1058448 | 17..101 | 100 | -> | Plus |
arm_3R | 1058513..1058896 | 102..485 | 100 | -> | Plus |
arm_3R | 1059107..1059460 | 486..840 | 99 | | Plus |
BO07517.complete Sequence
2911 bp (2911 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630822
> BO07517.complete
GAAGTTATCAGTCGACATGACAACGCCCACGCGCGCCACCCTGGAAAAGG
CTCTGAAAAGCGACCAGAAGCTTGTGAATTCCGCCACACAGATAGCCAAG
GATCTGACCGCCAAGGCATATGACATATCTGCTCTGGCCGAGGCACTGGG
CTTCGCCCTGTCCTCTCCGGACATGGAGGAGCGTGTGGCCGGAACCAACT
TGCTCTCCGCCGTGTTGATAGCACTGCCCCAGGATCTGCTGCAAGAGCGG
CAGCTGGAGTTCCTCAGCACCTTTTACATGGACCGCCTGCGCGACCATCA
CAACGTAATGCCAGCCATTATCGATGGAATCGACGCCCTGGTTCACATGA
AAGCTCTACCGCGCGCCCAGATTCCCCAGATTCTGCAGTCATTCTTCGAG
CACACCACCTGCCAGTCGCAGACGCGGAGCGACCGCACCAAGCTGTTCCA
CATTTTCCAGTACTTGACGGAAAACTTCCAGGACGAGCTGCAAGCGATGG
CCGGTGACTTCGTCTACGGCCTGATCAATTCCATTGACGGCGAGCGTGAC
CCCCGCAACCTTGACATCATTTTCAGCTTCATGCCCGAGTTCTTGTCAAC
GTATCCGCTGCTGCATTTGGCCGAAGAGATGTTTGAGATCTTTGCGTGTT
ACTTTCCAATCGACTTTAATCCCAGCAAGCAGGATCCAGCGGCCATAACC
CGTGATGAATTGTCCAAGAAGTTGACTAACTGCCTGGTAGCCAACAACGA
ATTCGCTGAGGGCACAGTGGTACTGGCCATAGAAAAGCTGGAGAGTGAGT
TGCTGGTTGCCAAACTGGACTCCATAGAACTGCTGCACCAAGCTGCCGTG
AAGTTCCCGCCTTCCGTTCTGGAGCCGCACTTCGATCAGATATGGCAGGC
TCTGAAAACAGAGACTTTTCCAGGAAATGACAATGAGGAGATACTGAAAG
CTTCCCTTAAGGCGTTGTCTGCGCTCCTGGAGAGAGCTGCTCACATACCG
GATATAAGCCACAGCTACCAGAGCTCTATTCTGGGCGTAATTCTACCGCA
TCTCAGCGATGTCAATCAGCGGCTCTTCCATCCTGCCACCGGGATCGCCT
TAGTTTGTGTATCGGGAGATGCGCCCTATGCAGCGGACAAAATCCTCAAC
AGCTTTTTGCTCAAGCTGCAGGCCGCAGATGCTAGTTCTGAGCAGCGGAT
CAAGATCTATTACATAGTTAGCCAAGTCTATAAGCTATCTGCGTTGCGTG
GCTCTCTCCAGAAATTGGACACCACGATACGCGAGTCTGTGCAGGACGAT
GTAATCGCCTCCCTACGCCTAATTGAACAGGAAGAGTTCGATGCCAAGAA
GGAGGACTTGGAGTTGCAGAAGGCGGCCCTTTCGGTGCTTAACGAAAGTG
CTCCTCTTCTCAACGAGAAACAACGCGCTTTAATTTACAAAGCTCTGGTT
CAGCTTGTCAGCCATCCGTCCATCGACATCGATTTCACCACACTGACGGT
TAGCCTTGGAGCCCTGCAACCGGTGGAGGTGCAGTCAAATTTCATTGATG
TTTGCGTGCGAAATTTCGAGATTTTCTCCACATTTGTCAAACGAAAGATA
TACACAAATTTATTGCCGCTCATGCCTCAAATAGCGTTCACTCAACGCAT
TCTAGATTTGGTTATGACACAGACGTTTAACGATACTACTGCAGAGCCCG
TCCGTTTATTGGCTCTGGAAGCATTAAACAAACTGCTCCTGCTAGCGGAT
CAGCGCTTTATCGTGGACGTGCAGCAGGAGTCCAATCTTCTTCACAAGCT
CATCGAACTGGGCCAGAAGACCGAGGGTCTGTCTATGCAGTCGCTAGAAC
AGATTGCGGGCGCTTTAAGTCGTATCACGCAACAGCTCCCGCTCTCCGAA
CAAAGCGCTATAGTAAGCGAGTATCTTCCTGGACTCAATCTGAGTCAATC
GGCTGATTTGTACATTACCAAGGGCCTGCTGGGCTACCTTCATAAAGACA
TAACCCTGGATGACCACTTCGAGCGGCTTCTGACCGATTTGACGCAGCTT
TCGCTTAATTCGGACAACGAACAGTTGCGTGTAATCGCTCACCACCTGCT
CTGTAGCATGGTCAACAAGATGGAGTCGAACCCAGCTAATCTAAGGAAGG
TCAAAAAAATCACGGAGCAACTGAAGGTGGCTATTAAAAAGGGCGATGTT
CGGGCGGTGGAGATCCTTGCATGGGTGGGGAAGGGCCTAGTAGTCGCAGG
ATTCGATGAGGCTGCCGATGTTGTTGGTGATCTCTCGGATCTACTAAAAC
ATCCCAGTTTGAGCACTGCCGCTGCCTTGGGATTCGACATCATTGCCGCC
GAGTACCCAGAATTGGATTTGCCTGTCGTTAAATTCCTCTACAAGCAGAA
GCTTTTCCACACTATCATGGGAAAAATGGGCAGCAAACTTGCCAACTACT
GTGTGCACCACTTGAAGGCTTTTGTCTACGTACTGAAAGCCACGCCACAG
GCGGTTATTAAGCTAAACATTGAGCAGCTCGGTCCGCTGCTTTTCAAGAG
CTTGGAGGAGCACAACGAGGCGCAGTCGCTGTGCATTGCATTGGGCATCT
GTGAAAAGTTTGTGGCGCAGCAGGACACGTATTTCCAAGGGCATTTGGCC
CACCTCATACCCAGCTGTCTGGAGCTGTCGAAATACAAGGCTCAGCATAC
CATGCAAGTGCGAATTGCGGCGCTGCAGCTGCTCTACGATGTGACAAAGT
ATCCTACCTTCGTCCTGTTGCCCCACAAAGTCGATGTTACTCTGGCCCTG
GCCGCCGCCTTGGATGATCCCAAGCGTCTGGTGCGGAACACAGCGGTGAA
GGCCAGGAATGCGTGGTACCTGGTCGGTGCGCCTAGTCCGAATGCAAGCT
TTCTAGACCAT
BO07517.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mms19-RB | 2880 | CG12005-PB | 1..2877 | 17..2893 | 14385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mms19-RB | 3233 | CG12005-RB | 100..2976 | 17..2893 | 14385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5233792..5235238 | 835..2281 | 7235 | 100 | Plus |
3R | 32079331 | 3R | 5235306..5235728 | 2282..2704 | 2115 | 100 | Plus |
3R | 32079331 | 3R | 5232790..5233174 | 101..485 | 1925 | 100 | Plus |
3R | 32079331 | 3R | 5233384..5233734 | 485..835 | 1755 | 100 | Plus |
3R | 32079331 | 3R | 5235842..5236031 | 2704..2893 | 950 | 100 | Plus |
3R | 32079331 | 3R | 5232642..5232726 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:51:02 has no hits.
BO07517.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:01 Download gff for
BO07517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mms19-RB | 1..2880 | 17..2894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:59 Download gff for
BO07517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mms19-RB | 97..2977 | 17..2899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:38:45 Download gff for
BO07517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mms19-RB | 100..2976 | 17..2895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:01 Download gff for
BO07517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mms19-RB | 97..2977 | 17..2899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:03 Download gff for
BO07517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mms19-RB | 100..2976 | 17..2895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:03 Download gff for
BO07517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5232642..5232726 | 17..101 | 100 | -> | Plus |
3R | 5232791..5233174 | 102..485 | 100 | -> | Plus |
3R | 5233385..5233734 | 486..835 | 100 | -> | Plus |
3R | 5233793..5235238 | 836..2281 | 100 | -> | Plus |
3R | 5235306..5235728 | 2282..2704 | 100 | -> | Plus |
3R | 5235843..5236031 | 2705..2895 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:38:45 Download gff for
BO07517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1058364..1058448 | 17..101 | 100 | -> | Plus |
arm_3R | 1058513..1058896 | 102..485 | 100 | -> | Plus |
arm_3R | 1059107..1059456 | 486..835 | 100 | -> | Plus |
arm_3R | 1059515..1060960 | 836..2281 | 100 | -> | Plus |
arm_3R | 1061028..1061450 | 2282..2704 | 100 | -> | Plus |
arm_3R | 1061565..1061753 | 2705..2895 | 98 | | Plus |
BO07517.pep Sequence
Translation from 16 to 2911
> BO07517.pep
MTTPTRATLEKALKSDQKLVNSATQIAKDLTAKAYDISALAEALGFALSS
PDMEERVAGTNLLSAVLIALPQDLLQERQLEFLSTFYMDRLRDHHNVMPA
IIDGIDALVHMKALPRAQIPQILQSFFEHTTCQSQTRSDRTKLFHIFQYL
TENFQDELQAMAGDFVYGLINSIDGERDPRNLDIIFSFMPEFLSTYPLLH
LAEEMFEIFACYFPIDFNPSKQDPAAITRDELSKKLTNCLVANNEFAEGT
VVLAIEKLESELLVAKLDSIELLHQAAVKFPPSVLEPHFDQIWQALKTET
FPGNDNEEILKASLKALSALLERAAHIPDISHSYQSSILGVILPHLSDVN
QRLFHPATGIALVCVSGDAPYAADKILNSFLLKLQAADASSEQRIKIYYI
VSQVYKLSALRGSLQKLDTTIRESVQDDVIASLRLIEQEEFDAKKEDLEL
QKAALSVLNESAPLLNEKQRALIYKALVQLVSHPSIDIDFTTLTVSLGAL
QPVEVQSNFIDVCVRNFEIFSTFVKRKIYTNLLPLMPQIAFTQRILDLVM
TQTFNDTTAEPVRLLALEALNKLLLLADQRFIVDVQQESNLLHKLIELGQ
KTEGLSMQSLEQIAGALSRITQQLPLSEQSAIVSEYLPGLNLSQSADLYI
TKGLLGYLHKDITLDDHFERLLTDLTQLSLNSDNEQLRVIAHHLLCSMVN
KMESNPANLRKVKKITEQLKVAIKKGDVRAVEILAWVGKGLVVAGFDEAA
DVVGDLSDLLKHPSLSTAAALGFDIIAAEYPELDLPVVKFLYKQKLFHTI
MGKMGSKLANYCVHHLKAFVYVLKATPQAVIKLNIEQLGPLLFKSLEEHN
EAQSLCIALGICEKFVAQQDTYFQGHLAHLIPSCLELSKYKAQHTMQVRI
AALQLLYDVTKYPTFVLLPHKVDVTLALAAALDDPKRLVRNTAVKARNAW
YLVGAPSPNASFLDH
BO07517.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mms19-PB | 959 | CG12005-PB | 1..959 | 1..959 | 4803 | 100 | Plus |