Clone BO07517 Report

Search the DGRC for BO07517

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptMms19-RB
Protein status:BO07517.pep: validated full length
Sequenced Size:2911

Clone Sequence Records

BO07517.3prime Sequence

869 bp (852 high quality bases) assembled on 2006-01-06

> BO07517.3prime
ATGGTCTAGAAAGCTTGCATTCGGACTAGGCGCACCGACCAGGTACCACG
CATTCCTGGCCTTCACCGCTGTGTTCCGCACCAGACGCTTGGGATCATCC
AAGGCGGCGGCCAGGGCCAGAGTAACATCGACTTTGTGGGGCAACAGGAC
GAAGGTAGGATACTTTGTCACATCGTAGAGCAGCTGCAGCGCCGCAATTC
GCACTTGCATGGTATGCTGAGCCTTGTATTTCGACAGCTCCAGACAGCTG
GGTATGAGGTGGGCCAAATGCCCTTGGAAATACGTGTCCTGCTGCGCCAC
AAACTTTTCACAGATGCCCAATGCAATGCACAGCGACTGCGCCTCGTTGT
GCTCCTCCAAGCTCTTGAAAAGCAGCGGACCGAGCTGCTCAATGTTTAGC
TTAATAACCGCCTGTGGCGTGGCTTTCAGTACGTAGACAAAAGCCTTCAA
GTGGTGCACACAGTAGTTGGCAAGTTTGCTGCCCATTTTTCCCATGATAG
TGTGGAAAAGCTTCTGCTTGTAGAGGAATTTAACGACAGGCAAATCCAAT
TCTGGGTACTCGGCGGCAATGATGTCGAATCCCAAGGCAGCGGCAGTGCT
CAAACTGGGATGTTTTAGTAGATCCGAGAGATCACCAACAACATCGGCAG
CCTCATCGAATCCTGCGACTACTAGGCCCTTCCCCACCCATGCAAGGATC
TCCACCGCCCGAACATCGCCCTTTTTAATAGCCACCTTCAGTTGCTCCGT
GATTTTTTTGACCTTCCTTAGATTAGCTGGGTTCGACTCCATCTTGTTGA
CCATGCTACAGAGCAGGTGGTGAGCGATTACACGCAACTGTTCGTTGTCC
GAATTAAGCGAAAGCTGCG

BO07517.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12005-PB 2880 Mms19-RB 2027..2877 869..19 4255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
Mms19-RB 3233 CG12005-RB 2126..2976 869..19 4255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5235306..5235728 630..208 2115 100 Minus
3R 32079331 3R 5235000..5235238 869..631 1195 100 Minus
3R 32079331 3R 5235842..5236031 208..19 950 100 Minus
Blast to na_te.dros performed on 2015-02-11 21:58:37 has no hits.

BO07517.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:01 Download gff for BO07517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12005-PA 2027..2880 18..869 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:15 Download gff for BO07517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12005-PB 2027..2880 18..869 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:47 Download gff for BO07517.3prime
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 2126..2980 13..869 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:04 Download gff for BO07517.3prime
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 2126..2980 13..869 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:04 Download gff for BO07517.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5235843..5236033 14..207 97 -> Minus
3R 5235000..5235238 631..869 100 -> Minus
3R 5235306..5235728 208..630 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:47 Download gff for BO07517.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1060722..1060960 631..869 100 -> Minus
arm_3R 1061028..1061450 208..630 100 -> Minus
arm_3R 1061565..1061755 14..207 97 -> Minus

BO07517.5prime Sequence

847 bp (824 high quality bases) assembled on 2006-01-06

> BO07517.5prime
GAAGTTATCAGTCGACATGACAACGCCCACGCGCGCCACCCTGGAAAAGG
CTCTGAAAAGCGACCAGAAGCTTGTGAATTCCGCCACACAGATAGCCAAG
GATCTGACCGCCAAGGCATATGACATATCTGCTCTGGCCGAGGCACTGGG
CTTCGCCCTGTCCTCTCCGGACATGGAGGAGCGTGTGGCCGGAACCAACT
TGCTCTCCGCCGTGTTGATAGCACTGCCCCAGGATCTGCTGCAAGAGCGG
CAGCTGGAGTTCCTCAGCACCTTTTACATGGACCGCCTGCGCGACCATCA
CAACGTAATGCCAGCCATTATCGATGGAATCGACGCCCTGGTTCACATGA
AAGCTCTACCGCGCGCCCAGATTCCCCAGATTCTGCAGTCATTCTTCGAG
CACACCACCTGCCAGTCGCAGACGCGGAGCGACCGCACCAAGCTGTTCCA
CATTTTCCAGTACTTGACGGAAAACTTCCAGGACGAGCTGCAAGCGATGG
CCGGTGACTTCGTCTACGGCCTGATCAATTCCATTGACGGCGAGCGTGAC
CCCCGCAACCTTGACATCATTTTCAGCTTCATGCCCGAGTTCTTGTCAAC
GTATCCGCTGCTGCATTTGGCCGAAGAGATGTTTGAGATCTTTGCGTGTT
ACTTTCCAATCGACTTTAATCCCAGCAAGCAGGATCCAGCGGCCATAACC
CGTGATGAATTGTCCAAGAAGTTGACTAACTGCCTGGTAGCCAACAACGA
ATTCGCTGAGGGCACAGTGGTACTGGCCATAGAAAAGCTGGAGAGTGAGT
TGCTGGTTGCCAAACTGGACTCCATAGAACTGCTGCACAAAGCTGCC

BO07517.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12005-PB 2880 Mms19-RB 1..831 17..847 4130 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
Mms19-RB 3233 CG12005-RB 100..930 17..847 4140 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5232790..5233174 101..485 1925 100 Plus
3R 32079331 3R 5233384..5233734 485..835 1755 100 Plus
3R 32079331 3R 5232642..5232726 17..101 425 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:02:45 has no hits.

BO07517.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:02 Download gff for BO07517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12005-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:17 Download gff for BO07517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12005-PB 1..831 17..847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:06:14 Download gff for BO07517.5prime
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 100..930 17..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:32:26 Download gff for BO07517.5prime
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 100..930 17..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:32:26 Download gff for BO07517.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5232791..5233174 102..485 100 -> Plus
3R 5233385..5233738 486..840 99   Plus
3R 5232642..5232726 17..101 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:06:14 Download gff for BO07517.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1058364..1058448 17..101 100 -> Plus
arm_3R 1058513..1058896 102..485 100 -> Plus
arm_3R 1059107..1059460 486..840 99   Plus

BO07517.complete Sequence

2911 bp (2911 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630822

> BO07517.complete
GAAGTTATCAGTCGACATGACAACGCCCACGCGCGCCACCCTGGAAAAGG
CTCTGAAAAGCGACCAGAAGCTTGTGAATTCCGCCACACAGATAGCCAAG
GATCTGACCGCCAAGGCATATGACATATCTGCTCTGGCCGAGGCACTGGG
CTTCGCCCTGTCCTCTCCGGACATGGAGGAGCGTGTGGCCGGAACCAACT
TGCTCTCCGCCGTGTTGATAGCACTGCCCCAGGATCTGCTGCAAGAGCGG
CAGCTGGAGTTCCTCAGCACCTTTTACATGGACCGCCTGCGCGACCATCA
CAACGTAATGCCAGCCATTATCGATGGAATCGACGCCCTGGTTCACATGA
AAGCTCTACCGCGCGCCCAGATTCCCCAGATTCTGCAGTCATTCTTCGAG
CACACCACCTGCCAGTCGCAGACGCGGAGCGACCGCACCAAGCTGTTCCA
CATTTTCCAGTACTTGACGGAAAACTTCCAGGACGAGCTGCAAGCGATGG
CCGGTGACTTCGTCTACGGCCTGATCAATTCCATTGACGGCGAGCGTGAC
CCCCGCAACCTTGACATCATTTTCAGCTTCATGCCCGAGTTCTTGTCAAC
GTATCCGCTGCTGCATTTGGCCGAAGAGATGTTTGAGATCTTTGCGTGTT
ACTTTCCAATCGACTTTAATCCCAGCAAGCAGGATCCAGCGGCCATAACC
CGTGATGAATTGTCCAAGAAGTTGACTAACTGCCTGGTAGCCAACAACGA
ATTCGCTGAGGGCACAGTGGTACTGGCCATAGAAAAGCTGGAGAGTGAGT
TGCTGGTTGCCAAACTGGACTCCATAGAACTGCTGCACCAAGCTGCCGTG
AAGTTCCCGCCTTCCGTTCTGGAGCCGCACTTCGATCAGATATGGCAGGC
TCTGAAAACAGAGACTTTTCCAGGAAATGACAATGAGGAGATACTGAAAG
CTTCCCTTAAGGCGTTGTCTGCGCTCCTGGAGAGAGCTGCTCACATACCG
GATATAAGCCACAGCTACCAGAGCTCTATTCTGGGCGTAATTCTACCGCA
TCTCAGCGATGTCAATCAGCGGCTCTTCCATCCTGCCACCGGGATCGCCT
TAGTTTGTGTATCGGGAGATGCGCCCTATGCAGCGGACAAAATCCTCAAC
AGCTTTTTGCTCAAGCTGCAGGCCGCAGATGCTAGTTCTGAGCAGCGGAT
CAAGATCTATTACATAGTTAGCCAAGTCTATAAGCTATCTGCGTTGCGTG
GCTCTCTCCAGAAATTGGACACCACGATACGCGAGTCTGTGCAGGACGAT
GTAATCGCCTCCCTACGCCTAATTGAACAGGAAGAGTTCGATGCCAAGAA
GGAGGACTTGGAGTTGCAGAAGGCGGCCCTTTCGGTGCTTAACGAAAGTG
CTCCTCTTCTCAACGAGAAACAACGCGCTTTAATTTACAAAGCTCTGGTT
CAGCTTGTCAGCCATCCGTCCATCGACATCGATTTCACCACACTGACGGT
TAGCCTTGGAGCCCTGCAACCGGTGGAGGTGCAGTCAAATTTCATTGATG
TTTGCGTGCGAAATTTCGAGATTTTCTCCACATTTGTCAAACGAAAGATA
TACACAAATTTATTGCCGCTCATGCCTCAAATAGCGTTCACTCAACGCAT
TCTAGATTTGGTTATGACACAGACGTTTAACGATACTACTGCAGAGCCCG
TCCGTTTATTGGCTCTGGAAGCATTAAACAAACTGCTCCTGCTAGCGGAT
CAGCGCTTTATCGTGGACGTGCAGCAGGAGTCCAATCTTCTTCACAAGCT
CATCGAACTGGGCCAGAAGACCGAGGGTCTGTCTATGCAGTCGCTAGAAC
AGATTGCGGGCGCTTTAAGTCGTATCACGCAACAGCTCCCGCTCTCCGAA
CAAAGCGCTATAGTAAGCGAGTATCTTCCTGGACTCAATCTGAGTCAATC
GGCTGATTTGTACATTACCAAGGGCCTGCTGGGCTACCTTCATAAAGACA
TAACCCTGGATGACCACTTCGAGCGGCTTCTGACCGATTTGACGCAGCTT
TCGCTTAATTCGGACAACGAACAGTTGCGTGTAATCGCTCACCACCTGCT
CTGTAGCATGGTCAACAAGATGGAGTCGAACCCAGCTAATCTAAGGAAGG
TCAAAAAAATCACGGAGCAACTGAAGGTGGCTATTAAAAAGGGCGATGTT
CGGGCGGTGGAGATCCTTGCATGGGTGGGGAAGGGCCTAGTAGTCGCAGG
ATTCGATGAGGCTGCCGATGTTGTTGGTGATCTCTCGGATCTACTAAAAC
ATCCCAGTTTGAGCACTGCCGCTGCCTTGGGATTCGACATCATTGCCGCC
GAGTACCCAGAATTGGATTTGCCTGTCGTTAAATTCCTCTACAAGCAGAA
GCTTTTCCACACTATCATGGGAAAAATGGGCAGCAAACTTGCCAACTACT
GTGTGCACCACTTGAAGGCTTTTGTCTACGTACTGAAAGCCACGCCACAG
GCGGTTATTAAGCTAAACATTGAGCAGCTCGGTCCGCTGCTTTTCAAGAG
CTTGGAGGAGCACAACGAGGCGCAGTCGCTGTGCATTGCATTGGGCATCT
GTGAAAAGTTTGTGGCGCAGCAGGACACGTATTTCCAAGGGCATTTGGCC
CACCTCATACCCAGCTGTCTGGAGCTGTCGAAATACAAGGCTCAGCATAC
CATGCAAGTGCGAATTGCGGCGCTGCAGCTGCTCTACGATGTGACAAAGT
ATCCTACCTTCGTCCTGTTGCCCCACAAAGTCGATGTTACTCTGGCCCTG
GCCGCCGCCTTGGATGATCCCAAGCGTCTGGTGCGGAACACAGCGGTGAA
GGCCAGGAATGCGTGGTACCTGGTCGGTGCGCCTAGTCCGAATGCAAGCT
TTCTAGACCAT

BO07517.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
Mms19-RB 2880 CG12005-PB 1..2877 17..2893 14385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Mms19-RB 3233 CG12005-RB 100..2976 17..2893 14385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5233792..5235238 835..2281 7235 100 Plus
3R 32079331 3R 5235306..5235728 2282..2704 2115 100 Plus
3R 32079331 3R 5232790..5233174 101..485 1925 100 Plus
3R 32079331 3R 5233384..5233734 485..835 1755 100 Plus
3R 32079331 3R 5235842..5236031 2704..2893 950 100 Plus
3R 32079331 3R 5232642..5232726 17..101 425 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:51:02 has no hits.

BO07517.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:01 Download gff for BO07517.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 1..2880 17..2894 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:59 Download gff for BO07517.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 97..2977 17..2899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:38:45 Download gff for BO07517.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 100..2976 17..2895 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:01 Download gff for BO07517.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 97..2977 17..2899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:03 Download gff for BO07517.complete
Subject Subject Range Query Range Percent Splice Strand
Mms19-RB 100..2976 17..2895 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:03 Download gff for BO07517.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5232642..5232726 17..101 100 -> Plus
3R 5232791..5233174 102..485 100 -> Plus
3R 5233385..5233734 486..835 100 -> Plus
3R 5233793..5235238 836..2281 100 -> Plus
3R 5235306..5235728 2282..2704 100 -> Plus
3R 5235843..5236031 2705..2895 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:38:45 Download gff for BO07517.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1058364..1058448 17..101 100 -> Plus
arm_3R 1058513..1058896 102..485 100 -> Plus
arm_3R 1059107..1059456 486..835 100 -> Plus
arm_3R 1059515..1060960 836..2281 100 -> Plus
arm_3R 1061028..1061450 2282..2704 100 -> Plus
arm_3R 1061565..1061753 2705..2895 98   Plus

BO07517.pep Sequence

Translation from 16 to 2911

> BO07517.pep
MTTPTRATLEKALKSDQKLVNSATQIAKDLTAKAYDISALAEALGFALSS
PDMEERVAGTNLLSAVLIALPQDLLQERQLEFLSTFYMDRLRDHHNVMPA
IIDGIDALVHMKALPRAQIPQILQSFFEHTTCQSQTRSDRTKLFHIFQYL
TENFQDELQAMAGDFVYGLINSIDGERDPRNLDIIFSFMPEFLSTYPLLH
LAEEMFEIFACYFPIDFNPSKQDPAAITRDELSKKLTNCLVANNEFAEGT
VVLAIEKLESELLVAKLDSIELLHQAAVKFPPSVLEPHFDQIWQALKTET
FPGNDNEEILKASLKALSALLERAAHIPDISHSYQSSILGVILPHLSDVN
QRLFHPATGIALVCVSGDAPYAADKILNSFLLKLQAADASSEQRIKIYYI
VSQVYKLSALRGSLQKLDTTIRESVQDDVIASLRLIEQEEFDAKKEDLEL
QKAALSVLNESAPLLNEKQRALIYKALVQLVSHPSIDIDFTTLTVSLGAL
QPVEVQSNFIDVCVRNFEIFSTFVKRKIYTNLLPLMPQIAFTQRILDLVM
TQTFNDTTAEPVRLLALEALNKLLLLADQRFIVDVQQESNLLHKLIELGQ
KTEGLSMQSLEQIAGALSRITQQLPLSEQSAIVSEYLPGLNLSQSADLYI
TKGLLGYLHKDITLDDHFERLLTDLTQLSLNSDNEQLRVIAHHLLCSMVN
KMESNPANLRKVKKITEQLKVAIKKGDVRAVEILAWVGKGLVVAGFDEAA
DVVGDLSDLLKHPSLSTAAALGFDIIAAEYPELDLPVVKFLYKQKLFHTI
MGKMGSKLANYCVHHLKAFVYVLKATPQAVIKLNIEQLGPLLFKSLEEHN
EAQSLCIALGICEKFVAQQDTYFQGHLAHLIPSCLELSKYKAQHTMQVRI
AALQLLYDVTKYPTFVLLPHKVDVTLALAAALDDPKRLVRNTAVKARNAW
YLVGAPSPNASFLDH

BO07517.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Mms19-PB 959 CG12005-PB 1..959 1..959 4803 100 Plus