Clone Sequence Records
BO07525.3prime Sequence
933 bp (737 high quality bases) assembled on 2006-01-06
> BO07525.3prime
ATGGTCTAGAAAGCTTGCGTGCTCGTCCAGGTGCGAGAACTTTTTGCGCA
GCTTCTCGCGCCTCTCCTTCTTCACATGACGCCAGGGCTTGGCCGCCGGA
TCATTGCCGGCTACTAGGGACCCGTCGTTGGCCAGGCGCACGTTAGGGAA
GTTAGTGCGTCCTTTGACGTGGGCGTGCGTAGGCTTGTCGGAGAAGAATT
GGTTGTCTAGCTCCTTGGACGTGCTTTTGTTGATCCGCATGGCTCGCTGC
TGTTGGCCGGGCAGCTGTGATTCCTCGATGACCCTGCGCTGGCGTTCGGG
AAAGGTGTGATACTCGGTCTGCGGTACAGAGGGCGGGCTCATGGCGTAGA
GCAGTCTGCCATTGACGTAGTCTTTAAGCACATACCTGGCGGAACGCGCC
TGATCCGGCTGCCCGTTGGAGGTCATAAAACCGCGATTGTATCCATAAGC
CAGCAGCAGCTCCTCCGAATGCGGTGGCCTTTCCATGTCCTCGCCTTCCA
GCGGCTTGGCTATCACAATACCGTATTTGTCTTCAAGGACGTGGCGCGGA
ATGCGCTCGCACAGCAAGTTGACGGCGGGAACGTGATCGCGCATTTGGTC
AATGGGCAGGATGCCGTTGAGCAACATGTCCGCCTTGGTTAACACAAAAC
TCGGCATCACCAGACCGGGACAGTCGCAGAGCAGTATGTCCTTGTCCAGG
AAAAGCGTCTGGAAGCGTTTAGTTTTGCCCGGCGTGGCCGAAACGGACAC
CTTCTTCACTGTCATCAGCGAGTTGATGGTGCTACTTTTGCCAACGTTTG
GGTAGCCGACCATTCCGACGGTCACGTGCTGCTCTGTGTGCCGGGGACCG
GTGTAGATGTTTCGCAGGAACTCAATGAGCTCCAGGCGGGACAGCAGTCG
GGGACTGTTCTTGTCCCCGGGCAATCGTGGCAG
BO07525.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14788-PA | 1821 | l(1)G0431-RA | 904..1818 | 933..19 | 4575 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns3-RB | 2176 | CG14788-RB | 1009..1923 | 933..19 | 4575 | 100 | Minus |
| Ns3-RA | 2040 | CG14788-RA | 1009..1923 | 933..19 | 4575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1462646..1463138 | 441..933 | 2465 | 100 | Plus |
| X | 23542271 | X | 1462097..1462313 | 19..235 | 1085 | 100 | Plus |
| X | 23542271 | X | 1462373..1462578 | 235..440 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:14:53 has no hits.
BO07525.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:15 Download gff for
BO07525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14788-PA | 904..1821 | 16..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:36 Download gff for
BO07525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14788-PA | 904..1821 | 16..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:35 Download gff for
BO07525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 1009..1923 | 19..933 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:43 Download gff for
BO07525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 1009..1923 | 19..933 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:43 Download gff for
BO07525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1462646..1463138 | 441..933 | 100 | | Plus |
| X | 1462097..1462312 | 19..234 | 100 | <- | Plus |
| X | 1462373..1462578 | 235..440 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:35 Download gff for
BO07525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1356130..1356345 | 19..234 | 100 | <- | Plus |
| arm_X | 1356406..1356611 | 235..440 | 100 | <- | Plus |
| arm_X | 1356679..1357171 | 441..933 | 100 | | Plus |
BO07525.5prime Sequence
896 bp (816 high quality bases) assembled on 2006-01-06
> BO07525.5prime
GAAGTTATCAGTCGACATGGGCAAAAAGAACAAGGGCGGCGCCCCCAACC
TGGGCCGCCAGTTGATCAAGGATCGTTTCGGACACACTCAGCGCCGCAAG
GTGGACAACGACACGATGCTGCACACCACCGAGCTGCAGGATGGCTACGA
CTGGGGCCGCCTCAACCTGTCCTCTGTCACTGAGGAGTCGTCGTTCCAGG
CCTTCCTGCGCACGGCTGAGCTGGCCGGCACTGAGTTCCAGGCCGAGAAG
CTGAACATCACGTTCGTGAACCCCAAGCAGCGCGTTGGACTGCTGAGCAA
GACGCAGGAGCAGCGCATGCACCAGAAGCACGACGAGCACCGTGACCAGC
TCAAGATCCCGCGGCGGCCCAAGTGGACCAAGGAGACGAGCGCCGAGGAG
CTAGTGCGAGCCGAGAACGAGGCATTTCTCGACTGGCGCCGCGACCTGGC
GCTGCTGCAGGAGGACGAGGAGATCTTGATGACTCCGTATGAGAAGAACC
TGGAGTTCTGGCGGCAGCTGTGGCGCGTAGTGGAGCGATCTGACGTCGTT
GTGCAGATCGTAGACGCCCGTAATCCGCTGCTGTTCCGCAGCGCCGACCT
TGAGCGCTACGTAAAGGAGGTGGAACCTAGCAAGATGAACATGATCCTGG
TAAACAAGTCGGACCTGCTCACTGAGGAACAGCGTCGCCACTGGGCGGAG
TACTTTGACAGCGAGGGTATTCGCACGGCCTTCTACTCGGCCACGCTGGT
AGAGGAGGAGTTGAAGCGGGAGGCGGAGGAGTGCCTGGATTCCTTTCCCG
AGGTGCAACAGCTGCGCAGAGCAGTTGAGGAGATAAAACAGTCGTTGGAT
AGCGTGGAGGACGCTTTTGACGTTATCGAGCAGAAATATAAGACGA
BO07525.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14788-PA | 1821 | l(1)G0431-RA | 1..880 | 17..896 | 4350 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns3-RB | 2176 | CG14788-RB | 105..985 | 16..896 | 4375 | 99.8 | Plus |
| Ns3-RA | 2040 | CG14788-RA | 105..985 | 16..896 | 4375 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1463162..1463940 | 896..118 | 3865 | 99.7 | Minus |
| X | 23542271 | X | 1464014..1464116 | 118..16 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 21:58:49 has no hits.
BO07525.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:16 Download gff for
BO07525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14788-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:37 Download gff for
BO07525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14788-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:50 Download gff for
BO07525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 94..984 | 3..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:42 Download gff for
BO07525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 94..984 | 3..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:42 Download gff for
BO07525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1463163..1463939 | 119..895 | 99 | <- | Minus |
| X | 1464014..1464127 | 3..118 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:50 Download gff for
BO07525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1357196..1357972 | 119..895 | 99 | <- | Minus |
| arm_X | 1358047..1358160 | 3..118 | 95 | | Minus |
BO07525.complete Sequence
1852 bp (1852 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630823
> BO07525.complete
GAAGTTATCAGTCGACATGGGCAAAAAGAACAAGGGCGGCGCCCCCAACC
TGGGCCGCCAGTTGATCAAGGATCGTTTCGGACACACTCAGCGCCGCAAG
GTGGACAACGACACGATGCTGCACACCACCGAGCTGCAGGATGGCTACGA
CTGGGGCCGCCTCAACCTGTCCTCTGTCACTGAGGAGTCGTCGTTCCAGG
CCTTCCTGCGCACGGCTGAGCTGGCCGGCACTGAGTTCCAGGCCGAGAAG
CTGAACATCACGTTCGTGAACCCCAAGCAGCGCGTTGGACTGCTGAGCAA
GACGCAGGAGCAGCGCATGCACCAGAAGCACGACGAGCACCGTGACCAGC
TCAAGATCCCGCGGCGGCCCAAGTGGACCAAGGAGACGAGCGCCGAGGAG
CTAGTGCGAGCCGAGAACGAGGCATTTCTCGACTGGCGCCGCGACCTGGC
GCTGCTGCAGGAGGACGAGGAGATCTTGATGACTCCGTATGAGAAGAACC
TGGAGTTCTGGCGGCAGCTGTGGCGCGTAGTGGAGCGATCTGACGTCGTT
GTGCAGATCGTAGACGCCCGTAATCCGCTGCTGTTCCGCAGCGCCGACCT
TGAGCGCTACGTAAAGGAGGTGGAACCTAGCAAGATGAACATGATCCTGG
TAAACAAGTCGGACCTGCTCACTGAGGAACAGCGTCGCCACTGGGCGGAG
TACTTTGACAGCGAGGGTATTCGCACGGCCTTCTACTCGGCCACGCTGGT
AGAGGAGGAGTTGAAGCGGGAGGCGGAGGAGTGCCTGGATTCCTTTCCCG
AGGTGCAACAGCTGCGCAGAGCAGTTGAGGAGATAAAACAGTCGTTGGAT
AGCGTGGAGGACGCTTTGAACGTTATCGAGCAGAAATATAAGACGATTCC
CGAGACTCAAAACGATGAGCTGCCACGATTGCCCGGGGACAAGAACAGTC
CCCGACTGCTGTCCCGCCTGGAGCTCATTGAGTTCCTGCGAAACATCTAC
ACCGGTCCCCGGCACACAGAGCAGCACGTGACCGTCGGAATGGTCGGCTA
CCCAAACGTTGGCAAAAGTAGCACCATCAACTCGCTGATGACAGTGAAGA
AGGTGTCCGTTTCGGCCACGCCGGGCAAAACTAAACGCTTCCAGACGCTT
TTCCTGGACAAGGACATACTGCTCTGCGACTGTCCCGGTCTGGTGATGCC
GAGTTTTGTGTTAACCAAGGCGGACATGTTGCTCAACGGCATCCTGCCCA
TTGACCAAATGCGCGATCACGTTCCCGCCGTCAACTTGCTGTGCGAGCGC
ATTCCGCGCCACGTCCTTGAAGACAAATACGGTATTGTGATAGCCAAGCC
GCTGGAAGGCGAGGACATGGAAAGGCCACCGCATTCGGAGGAGCTGCTGC
TGGCTTATGGATACAATCGCGGTTTTATGACCTCCAACGGGCAGCCGGAT
CAGGCGCGTTCCGCCAGGTATGTGCTTAAAGACTACGTCAATGGCAGACT
GCTCTACGCCATGAGCCCGCCCTCTGTACCGCAGACCGAGTATCACACCT
TTCCCGAACGCCAGCGCAGGGTCATCGAGGAATCACAGCTGCCCGGCCAA
CAGCAGCGAGCCATGCGGATCAACAAAAGCACGTCCAAGGAGCTAGACAA
CCAATTCTTCTCCGACAAGCCTACGCACGCCCACGTCAAAGGACGCACTA
ACTTCCCTAACGTGCGCCTGGCCAACGACGGGTCCCTAGTAGCCGGCAAT
GATCCGGCGGCCAAGCCCTGGCGTCATGTGAAGAAGGAGAGGCGCGAGAA
GCTGCGCAAAAAGTTCTCGCACCTGGACGAGCACGCAAGCTTTCTAGACC
AT
BO07525.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns3-RB | 1821 | CG14788-PB | 1..1818 | 17..1834 | 9090 | 100 | Plus |
| Ns3-RA | 1821 | CG14788-PA | 1..1818 | 17..1834 | 9090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:27:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns3-RB | 2176 | CG14788-RB | 105..1923 | 16..1834 | 9095 | 100 | Plus |
| Ns3-RA | 2040 | CG14788-RA | 105..1923 | 16..1834 | 9095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1462646..1463940 | 1412..118 | 6475 | 100 | Minus |
| X | 23542271 | X | 1462097..1462313 | 1834..1618 | 1085 | 100 | Minus |
| X | 23542271 | X | 1462373..1462578 | 1618..1413 | 1030 | 100 | Minus |
| X | 23542271 | X | 1464014..1464116 | 118..16 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:26:57 has no hits.
BO07525.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:45 Download gff for
BO07525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0431-RA | 1..1821 | 17..1837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:44 Download gff for
BO07525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0431-RA | 86..1915 | 3..1834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:22 Download gff for
BO07525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 106..1923 | 17..1836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:46 Download gff for
BO07525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0431-RA | 86..1915 | 3..1834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:47 Download gff for
BO07525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 106..1923 | 17..1836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:47 Download gff for
BO07525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1462094..1462312 | 1619..1836 | 99 | <- | Minus |
| X | 1462373..1462578 | 1413..1618 | 100 | <- | Minus |
| X | 1462646..1463939 | 119..1412 | 100 | <- | Minus |
| X | 1464014..1464115 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:22 Download gff for
BO07525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1356127..1356345 | 1619..1836 | 99 | <- | Minus |
| arm_X | 1356406..1356611 | 1413..1618 | 100 | <- | Minus |
| arm_X | 1356679..1357972 | 119..1412 | 100 | <- | Minus |
| arm_X | 1358047..1358148 | 17..118 | 100 | | Minus |
BO07525.pep Sequence
Translation from 16 to 1852
> BO07525.pep
MGKKNKGGAPNLGRQLIKDRFGHTQRRKVDNDTMLHTTELQDGYDWGRLN
LSSVTEESSFQAFLRTAELAGTEFQAEKLNITFVNPKQRVGLLSKTQEQR
MHQKHDEHRDQLKIPRRPKWTKETSAEELVRAENEAFLDWRRDLALLQED
EEILMTPYEKNLEFWRQLWRVVERSDVVVQIVDARNPLLFRSADLERYVK
EVEPSKMNMILVNKSDLLTEEQRRHWAEYFDSEGIRTAFYSATLVEEELK
REAEECLDSFPEVQQLRRAVEEIKQSLDSVEDALNVIEQKYKTIPETQND
ELPRLPGDKNSPRLLSRLELIEFLRNIYTGPRHTEQHVTVGMVGYPNVGK
SSTINSLMTVKKVSVSATPGKTKRFQTLFLDKDILLCDCPGLVMPSFVLT
KADMLLNGILPIDQMRDHVPAVNLLCERIPRHVLEDKYGIVIAKPLEGED
MERPPHSEELLLAYGYNRGFMTSNGQPDQARSARYVLKDYVNGRLLYAMS
PPSVPQTEYHTFPERQRRVIEESQLPGQQQRAMRINKSTSKELDNQFFSD
KPTHAHVKGRTNFPNVRLANDGSLVAGNDPAAKPWRHVKKERREKLRKKF
SHLDEHASFLDH
BO07525.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:35:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns3-PB | 606 | CG14788-PB | 1..606 | 1..606 | 3156 | 100 | Plus |
| Ns3-PA | 606 | CG14788-PA | 1..606 | 1..606 | 3156 | 100 | Plus |
| Ns4-PA | 575 | CG9320-PA | 113..498 | 115..510 | 392 | 32.4 | Plus |
| Ns1-PA | 581 | CG3983-PA | 139..424 | 163..506 | 291 | 26.7 | Plus |
| Ns2-PA | 674 | CG6501-PA | 299..476 | 320..508 | 212 | 31.2 | Plus |
