Clone Sequence Records
BO07526.complete Sequence
1699 bp assembled on 2010-04-13
GenBank Submission: KX799939
> BO07526.complete
GAAGTTATCAGTCGACATGCTAGAAAACATTTCCCTGTGTGTGATCAAGA
TCGAAACGGATTTGGATCCCAGTGCAGATTCTGAGGGAGCTGTGTCCGCC
GAACATCCAACCAATCCCCGAGTGCTCAAGGAGCGGGAACGCGACCGCGG
ACTTCGCCAATCCCGCGACATCACCATCGAAACGTACACAAACCAGCGTT
GGAAGCGGGAATTGAGTGAACCCAGACAGCAGGAGATGAACTGGGTAGCC
GCCGTGCAGCATGTGAACAGCCCCTCGGCGGGCAGCTCCCGGGAGATAAC
TCCTCGGAGCGGCGATGATGGCCAGGCGGGAGCCAGCGCCTCCAACTTTC
CCCAAGAGATAGGGTACTTCTCCGGCAATCCCATCGTCGAGGTGACCAAA
GGTCTTATCCATCTCTACAAGAAAAACGAACGCAAGGCCATCAAGGAAGC
TCCATCTAACCAACTCTGCCTGCTGGCCGTGCCGGCCACTCTTAACTGCC
ACGATCTGCTGAACTTTATTGCCCCCTGTCATGCAGAGATTAAACACATC
CAGATTGTACGTGACGGCAGCCCCAATCAGTTCATGGTGCTTTTGGAATT
CCGCTCGAATGAATCCGCTTTGGAGTTCTACAAGTCCTATAATGGCAGTA
CTTACAACTCACTGGAACCGGACTCGCTGTGCCACGCGGTCTGGGTATCA
GAGGTGGAAAGGAGCGAGCATGGAGCACCACCAATGGGACACACCGAGCT
ACCCACCTGTCCAGTGTGCCTGGAGCGCATGGACGAGAGCGTGGATGGAG
TGTTGACCATATTGTGCAATCACGCCTTCCACGCCAGCTGCCTGATGAAA
TGGGGTGACTCCACCTGTCCGGTGTGCCGCCATGTTCAAACTCCTGGACT
GGTCGAAGATTCCGTGTGCATGGAATGCGAGGGCACCGATTCCTTATGGA
TCTGCCTGATCTGCGGACATGTGGGCTGCGGACGCTACCAGGGAGGACAT
GCTGCTGCACACTTCCGGGCCACAAATCACACCTTTGCCATGCAGTTGGG
CACCTCAAGCGTATGGGACTATGCCGGTGACAACTTTGTGCATCGCTTAT
TTCAAAACAAATCCGACGGCAAGCTGGTGGCATCGCAAACCGAGAAAGAT
GAGCGCGAGGAAAAGATTGACTCCATGCAGATGGAGTTCACATACCTGTT
GACCTCTCAGCTGGACACACAGCGCAAGTACTATGAGGAGCGCATGGAAC
GATTGGAGCAGGAGTGGCAGAACCACAAGGCGACTGCCAACGACGCCAAG
ACAGAGGTTTCCGAGCTTCAACAGCTTCAGCAGAACATGCAGAAAGAAAA
GGTCAATTTGGAGCGCAAGTTGGCCCAGCATACAGCTAAGCTAAAGGATG
TACAGAAGCAGCTGAACGAAGAGCGTGAGTTGTCCAAGGCACTGCAGAGC
AACCAGAGCTCCTGGCACGGCAAATACAAACTCTTGGAACAGCAGTACAA
CGAGTTCAAGCAAACCCACGACGCCGAGGTGACCGAATTAAAGGAACAGC
TTCGCGACATTATGTTCTTTTTGGACAATCAGCAAAAGTTGGCCAACACC
GAGATAGCGGGTGGCACCGTTACAGGCATTGCAGAGAAGGAACCGGATCC
CAACACCCGGCGCCGTAATCGTCGCAAGAAAGCAAGCTTTCTAGACCAT
BO07526.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:54:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5555-RA | 1668 | CG5555-PA | 1..1665 | 17..1681 | 8325 | 100 | Plus |
| CG5555-RB | 1677 | CG5555-PB | 15..1674 | 22..1681 | 8300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5555-RA | 1976 | CG5555-RA | 135..1800 | 16..1681 | 8330 | 100 | Plus |
| CG5555-RB | 1968 | CG5555-RB | 133..1792 | 22..1681 | 8300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19178618..19179410 | 1390..598 | 3965 | 100 | Minus |
| 3R | 32079331 | 3R | 19179711..19180062 | 426..75 | 1760 | 100 | Minus |
| 3R | 32079331 | 3R | 19178261..19178552 | 1681..1390 | 1460 | 100 | Minus |
| 3R | 32079331 | 3R | 19179478..19179648 | 597..427 | 855 | 100 | Minus |
| 3R | 32079331 | 3R | 19180127..19180188 | 77..16 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:54:38 has no hits.
BO07526.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:21 Download gff for
BO07526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5555-RA | 136..1800 | 17..1683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:07 Download gff for
BO07526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5555-RA | 136..1800 | 17..1683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:07 Download gff for
BO07526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5555-RA | 136..1800 | 17..1683 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:07 Download gff for
BO07526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19179478..19179648 | 427..597 | 100 | <- | Minus |
| 3R | 19178259..19178552 | 1390..1683 | 99 | <- | Minus |
| 3R | 19178619..19179410 | 598..1389 | 100 | <- | Minus |
| 3R | 19179711..19180059 | 78..426 | 100 | <- | Minus |
| 3R | 19180127..19180187 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:07 Download gff for
BO07526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15003981..15004274 | 1390..1683 | 99 | <- | Minus |
| arm_3R | 15004341..15005132 | 598..1389 | 100 | <- | Minus |
| arm_3R | 15005200..15005370 | 427..597 | 100 | <- | Minus |
| arm_3R | 15005433..15005781 | 78..426 | 100 | <- | Minus |
| arm_3R | 15005849..15005909 | 17..77 | 100 | | Minus |
BO07526.5prime Sequence
794 bp (150 high quality bases) assembled on 2010-02-20
> BO07526.5prime
GAAAACATTTCCCTGTGTGTGATCAAGATCGAAACGGATTTGGATCCCAG
TGCAGATTCTGAGGGAGCTGTGTCCGCCGAACATCCAACCAATCCCCGAG
TGCTCAAGGAGCGGGAACGCGACCGCGGACTTCGCCAATCCCGCGACATC
ACCATCTAAACGTACACAAACCAGCGTTGGAAGCGGGAATTGAGTGAACC
CGAACAGCAGGAGATGAACTGGGTAGCCGCCGTGCAGCATGTGAACAGCC
CCTCGGCGGGGAGCTCCCGGGAGATAACTCCTCAGAGCGGCCATGATGGC
CAGGCGGGAACCAGCGCCTCCAACTTTCCCCAAGAGATAGGGTACTTCTC
CGGCAATCCCATCCTCGAGGTGACCAAAGGTCTTATCCATCTCTACAAGA
AAAACGAACGCAGAGGGCATCAAGGAAGCTCCGTCTAACCAACTCTGCCT
GCTGGTCGTGCCGGCCACTCTTAACTGCCAGGATCTGCTGAACTTTATTG
CCCCCTGTCATGCAGAGATTAAACACCTCCATATTGTACGTGACCGCAGC
CCCAATCAGTTCATGGTGCTTTTGGAATTCCGCTCGAATGAATCCGCTTT
GGAGTACTATCAAGTCCTATAATGGCAGTACTTGCAACTCACTGGAACCT
GACTCCCTGTGCCCCCGCGTTCTGGGTATCAGAGGTGGAAAGGAGCGAGC
ATGGATTACCACATATGGGATACACCGAGCTACCTTCCTGTGCAGTGTGC
CTGGAACGCATGGACAAAAGCGTGGATGTAGTGTTGACCATATT
BO07526.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:57:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5555-RB | 1968 | CG5555-RB | 134..924 | 1..794 | 3400 | 95.5 | Plus |
| CG5555-RA | 1976 | CG5555-RA | 142..932 | 1..794 | 3400 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19179711..19180062 | 404..53 | 1640 | 97.7 | Minus |
| 3R | 32079331 | 3R | 19179195..19179410 | 794..577 | 720 | 90.8 | Minus |
| 3R | 32079331 | 3R | 19179478..19179640 | 576..414 | 710 | 95.7 | Minus |
| 3R | 32079331 | 3R | 19180127..19180181 | 55..1 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:57:18 has no hits.
BO07526.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 03:27:26 Download gff for
BO07526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5555-RA | 142..932 | 1..794 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:51:41 Download gff for
BO07526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5555-RA | 142..932 | 1..794 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:48 Download gff for
BO07526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5555-RA | 142..932 | 1..794 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:48 Download gff for
BO07526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19179478..19179648 | 405..576 | 95 | <- | Minus |
| 3R | 19179711..19180059 | 56..404 | 97 | <- | Minus |
| 3R | 19180127..19180181 | 1..55 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:51:41 Download gff for
BO07526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15005200..15005370 | 405..576 | 95 | <- | Minus |
| arm_3R | 15005433..15005781 | 56..404 | 97 | <- | Minus |
| arm_3R | 15005849..15005903 | 1..55 | 100 | | Minus |
BO07526.pep Sequence
Translation from 16 to 1699
> BO07526.pep
MLENISLCVIKIETDLDPSADSEGAVSAEHPTNPRVLKERERDRGLRQSR
DITIETYTNQRWKRELSEPRQQEMNWVAAVQHVNSPSAGSSREITPRSGD
DGQAGASASNFPQEIGYFSGNPIVEVTKGLIHLYKKNERKAIKEAPSNQL
CLLAVPATLNCHDLLNFIAPCHAEIKHIQIVRDGSPNQFMVLLEFRSNES
ALEFYKSYNGSTYNSLEPDSLCHAVWVSEVERSEHGAPPMGHTELPTCPV
CLERMDESVDGVLTILCNHAFHASCLMKWGDSTCPVCRHVQTPGLVEDSV
CMECEGTDSLWICLICGHVGCGRYQGGHAAAHFRATNHTFAMQLGTSSVW
DYAGDNFVHRLFQNKSDGKLVASQTEKDEREEKIDSMQMEFTYLLTSQLD
TQRKYYEERMERLEQEWQNHKATANDAKTEVSELQQLQQNMQKEKVNLER
KLAQHTAKLKDVQKQLNEERELSKALQSNQSSWHGKYKLLEQQYNEFKQT
HDAEVTELKEQLRDIMFFLDNQQKLANTEIAGGTVTGIAEKEPDPNTRRR
NRRKKASFLDH
BO07526.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5555-PA | 555 | CG5555-PA | 1..555 | 1..555 | 2943 | 100 | Plus |
| CG5555-PB | 558 | CG5555-PB | 6..558 | 3..555 | 2934 | 100 | Plus |
