Clone Sequence Records
BO07528.3prime Sequence
938 bp (750 high quality bases) assembled on 2006-01-06
> BO07528.3prime
ATGGTCTAGAAAGCTTGCGTCGCGTCCCACTTTGTGAGTGGCCACGGGCT
TATCCACCCGCACCACCCGTTCGGCTACGTTCAGGTAGGCCTCGTACTCA
ACGATATCCGGCGTGGTGTCGTAATGGTAGTGACCGCCCCAGTTGCTGAA
GGAGAAGGAGTGGAAGTGCTGCAGGCGAAGGTCCAGGTCGTGCTCCTTGG
TCACCAGCGTGCCCACGGCGTTCAGCTGGGCGGGCATCTCGTAGAACTTG
AGCCACTCGTTCACCTCCTCGTCGCTGTTGATGGGCGTCTTGCTGAAGTC
CCGCATCACGTGCTGGTGGGCAGCGCCCTTCTTGATCAGAAAAATGCCAC
CCAGACCCACCACCTTGTCCCCGTAGTGGTTCTCCAGGCCCTTGCGGATG
CACTCGATGAAGTTCTGTTCGCCAGTGCGCTGCTTGGCGGTGATTTTCAA
CACCTGACCAGGCTTGCCCTGGCTGAGGAAGAGGTTGAGAAGCAGGGCGC
ACCTGGGCTCTGTGTGGGGTATCTTCTCCAGGACGCACTCCTCCTGCTCT
CCCCTCACAGTGGCCGTGTAGCTGCCGTTCGTGAGCTCATCCTTCTCGTT
CACGGACAAGTTGAAGATGCCCTCGCAGTTGGATCCCCGGATGGGCCAAG
GTCCCGCTCCGGCGCCCACGGCGAACACCGTGCCGGGGCCCTGGATCTTT
CGCGTGATCTCGGCGATGTTGTACAGCTTATCTCGCTGCACGAGGGGCAG
CAGAAAGGGTGGGCCTCCCGCCTCCAGCAGCGTGGGCTTGCCGCCCAGTC
CACTCTCCACCAGGCCGAACTGCTTGGCCTTCAGATCCGGACAAGGGCCC
ACACTGACATTCACATTGGCGAAGTTGGCCGCCAGGGCACCCTGTATAAC
GTTCTGCAACTCTGACAATGGGGGCACGTACAGCGGCT
BO07528.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9119-PA | 969 | CG9119-RA | 47..966 | 938..19 | 4600 | 100 | Minus |
| CG32335-PA | 1086 | CG32335-RA | 853..908 | 249..194 | 155 | 91 | Minus |
| CG32335-PA | 1086 | CG32335-RA | 958..1032 | 144..70 | 150 | 88 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9119-RA | 1212 | CG9119-RA | 203..1122 | 938..19 | 4600 | 100 | Minus |
| CG32335-RB | 1082 | CG32335-RB | 195..1014 | 860..41 | 1130 | 76.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1203406..1204287 | 19..900 | 4410 | 100 | Plus |
| 3L | 28110227 | 3L | 1201939..1202758 | 41..860 | 1115 | 75.7 | Plus |
| 3L | 28110227 | 3L | 1204555..1204593 | 900..938 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:04:01 has no hits.
BO07528.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:19 Download gff for
BO07528.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9119-PA | 47..969 | 18..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:41 Download gff for
BO07528.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9119-PA | 47..969 | 18..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:06:22 Download gff for
BO07528.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9119-RA | 203..1130 | 11..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:36:03 Download gff for
BO07528.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9119-RA | 203..1130 | 11..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:36:03 Download gff for
BO07528.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1203398..1204286 | 11..899 | 99 | <- | Plus |
| 3L | 1204555..1204593 | 900..938 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:06:22 Download gff for
BO07528.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1203398..1204286 | 11..899 | 99 | <- | Plus |
| arm_3L | 1204555..1204593 | 900..938 | 100 | | Plus |
BO07528.5prime Sequence
912 bp (783 high quality bases) assembled on 2006-01-06
> BO07528.5prime
GAAGTTATCAGTCGACATGAGCCAGAACCAACTGAGTACGGAGCAACTGC
TCTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCAGAGTTGCAGAAC
GTTATACAGGGTGCCCTGGCGGCCAACTTCGCCAATGTGAATGTCAGTGT
GGGCCCTTGTCCGGATCTGAAGGCCAAGCAGTTCGGCCTGGTGGAGAGTG
GACTGGGCGGCAAGCCCACGCTGCTGGAGGCGGGAGGCCCACCCTTTCTG
CTGCCCCTCGTGCAGCGAGATAAGCTGTACAACATCGCCGAGATCACGCG
AAAGATCCAGGGCCCCGGCACGGTGTTCGCCGTGGGCGCCGGAGCGGGAC
CTTGGCCCATCCGGGGATCCAACTGCGAGGGCATCTTCAACTTGTCCGTG
AACGAGAAGGATGAGCTCACGAACGGCAGCTACACGGCCACTGTGAGGGG
AGAGCAGGAGGAGTGCGTCCTGGAGAAGATACCCCACACAGAGCCCAGGT
GCGCCCTGCTTCTCAACCTCTTCCTCAGCCAGGGCAAGCCTGGTCAGGTG
TTGAAAATCACCGCCAAGCAGCGCACTGGCGAACAGAACTTCATCGAGTG
CATCCGCAAGGGCCTGGAGAACCACTACGGGGACAAGGTGGTGGGTCTGG
GTGGCATTTTTCTGATCAAGAAGGGCGCTGCCCACCAGCACGTGATGCGG
GACTTCAGCAAGACGCCCATCAACAGCGACGAGGAGGTGAACGAGTGGCT
CAAGTTCTACGAGATGCCCGCCCAGCTGAACGCCGTGGGCACGCTGGTGA
CCAAGGAGCACGACCTGGACCTTCGCCTGCAGCACTTCCACTCCCTTCTC
TTCAGCAACTGGGGCGGTCACTACCATTACGACACCACGCCGGATATCGT
TGAGTACGAGGC
BO07528.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9119-PA | 969 | CG9119-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
| CG9119-PA | 969 | CG9119-RA | 834..896 | 850..912 | 315 | 100 | Plus |
| CG32335-PA | 1086 | CG32335-RA | 853..908 | 752..807 | 155 | 91 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9119-RA | 1212 | CG9119-RA | 157..1052 | 17..912 | 4435 | 99.8 | Plus |
| CG32335-RB | 1082 | CG32335-RB | 92..966 | 38..912 | 1030 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:04:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1203476..1204287 | 912..101 | 4000 | 99.5 | Minus |
| 3L | 28110227 | 3L | 1201987..1202758 | 912..141 | 995 | 75.3 | Minus |
| 3L | 28110227 | 3L | 1204555..1204639 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:04:48 has no hits.
BO07528.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:20 Download gff for
BO07528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9119-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:42 Download gff for
BO07528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9119-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:02 Download gff for
BO07528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9119-RA | 149..1052 | 9..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:32 Download gff for
BO07528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9119-RA | 149..1052 | 9..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:32 Download gff for
BO07528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1203476..1204286 | 102..912 | 99 | <- | Minus |
| 3L | 1204555..1204647 | 9..101 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:02 Download gff for
BO07528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1203476..1204286 | 102..912 | 99 | <- | Minus |
| arm_3L | 1204555..1204647 | 9..101 | 95 | | Minus |
BO07528.complete Sequence
1000 bp (1000 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630824
> BO07528.complete
GAAGTTATCAGTCGACATGAGCCAGAACCAACTGAGTACGGAGCAACTGC
TCTTCGAGGAGAAGCCGCTGTACGTGCCCCCATTGTCAGAGTTGCAGAAC
GTTATACAGGGTGCCCTGGCGGCCAACTTCGCCAATGTGAATGTCAGTGT
GGGCCCTTGTCCGGATCTGAAGGCCAAGCAGTTCGGCCTGGTGGAGAGTG
GACTGGGCGGCAAGCCCACGCTGCTGGAGGCGGGAGGCCCACCCTTTCTG
CTGCCCCTCGTGCAGCGAGATAAGCTGTACAACATCGCCGAGATCACGCG
AAAGATCCAGGGCCCCGGCACGGTGTTCGCCGTGGGCGCCGGAGCGGGAC
CTTGGCCCATCCGGGGATCCAACTGCGAGGGCATCTTCAACTTGTCCGTG
AACGAGAAGGATGAGCTCACGAACGGCAGCTACACGGCCACTGTGAGGGG
AGAGCAGGAGGAGTGCGTCCTGGAGAAGATACCCCACACAGAGCCCAGGT
GCGCCCTGCTTCTCAACCTCTTCCTCAGCCAGGGCAAGCCTGGTCAGGTG
TTGAAAATCACCGCCAAGCAGCGCACTGGCGAACAGAACTTCATCGAGTG
CATCCGCAAGGGCCTGGAGAACCACTACGGGGACAAGGTGGTGGGTCTGG
GTGGCATTTTTCTGATCAAGAAGGGCGCTGCCCACCAGCACGTGATGCGG
GACTTCAGCAAGACGCCCATCAACAGCGACGAGGAGGTGAACGAGTGGCT
CAAGTTCTACGAGATGCCCGCCCAGCTGAACGCCGTGGGCACGCTGGTGA
CCAAGGAGCACGACCTGGACCTTCGCCTGCAGCACTTCCACTCCTTCTCC
TTCAGCAACTGGGGCGGTCACTACCATTACGACACCACGCCGGATATCGT
TGAGTACGAGGCCTACCTGAACGTAGCCGAACGGGTGGTGCGGGTGGATA
AGCCCGTGGCCACTCACAAAGTGGGACGCGACGCAAGCTTTCTAGACCAT
BO07528.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9119-RA | 969 | CG9119-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
| CG32335-RB | 969 | CG32335-PB | 22..944 | 38..960 | 1135 | 74.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9119-RA | 1212 | CG9119-RA | 157..1122 | 17..982 | 4830 | 100 | Plus |
| CG32335-RB | 1082 | CG32335-RB | 92..1014 | 38..960 | 1135 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1203406..1204287 | 982..101 | 4410 | 100 | Minus |
| 3L | 28110227 | 3L | 1201939..1202758 | 960..141 | 1115 | 75.7 | Minus |
| 3L | 28110227 | 3L | 1204555..1204639 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:31:56 has no hits.
BO07528.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:07 Download gff for
BO07528.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9119-RA | 1..969 | 17..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:00 Download gff for
BO07528.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9119-RA | 146..1127 | 9..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:04 Download gff for
BO07528.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9119-RA | 157..1122 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:07 Download gff for
BO07528.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9119-RA | 146..1127 | 9..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:09 Download gff for
BO07528.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9119-RA | 157..1122 | 17..984 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:09 Download gff for
BO07528.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1203404..1204286 | 102..984 | 99 | <- | Minus |
| 3L | 1204555..1204639 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:04 Download gff for
BO07528.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1203404..1204286 | 102..984 | 99 | <- | Minus |
| arm_3L | 1204555..1204639 | 17..101 | 100 | | Minus |
BO07528.pep Sequence
Translation from 16 to 1000
> BO07528.pep
MSQNQLSTEQLLFEEKPLYVPPLSELQNVIQGALAANFANVNVSVGPCPD
LKAKQFGLVESGLGGKPTLLEAGGPPFLLPLVQRDKLYNIAEITRKIQGP
GTVFAVGAGAGPWPIRGSNCEGIFNLSVNEKDELTNGSYTATVRGEQEEC
VLEKIPHTEPRCALLLNLFLSQGKPGQVLKITAKQRTGEQNFIECIRKGL
ENHYGDKVVGLGGIFLIKKGAAHQHVMRDFSKTPINSDEEVNEWLKFYEM
PAQLNAVGTLVTKEHDLDLRLQHFHSFSFSNWGGHYHYDTTPDIVEYEAY
LNVAERVVRVDKPVATHKVGRDASFLDH
BO07528.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9119-PA | 322 | CG9119-PA | 1..322 | 1..322 | 1699 | 100 | Plus |
| CG32335-PB | 322 | CG32335-PB | 1..322 | 1..322 | 1350 | 76.7 | Plus |
