Clone Sequence Records
BO07529.3prime Sequence
855 bp (854 high quality bases) assembled on 2006-01-06
> BO07529.3prime
ATGGTCTAGAAAGCTTGCACTGATCTCGTACTGATATGCATCGTCCGAGT
CCTCGCCGCTGGATAAGTCCCGCTTACGGCGACGCTGCTCCCGCTTGCTG
AGCTTCTTGGCGGCTGGCGCCACTTCCGGTTCTGGCGGCGCAAGGGGCTC
CTCCTCGGGGAGCTCTTCCTCGATGGCGGCCGCATCCTCGTCCGGCTCGT
TGGCCTCCTCCTCGGCCCGCTTCTGCGTCTTGACCAGCTCGCAGAGATAC
TTGTAGCGCACCAGGCACTCCTCCTTGGTCTTCTCCGGCACACTGTTGGC
GATCTTCTGCCAACGGTCTCCGCCGGCCGTCTTCCGGTACTTGACTATCG
CCGCCTCCAGGGCGCGCTGCTGCTCTTGCGTCCAGTTGGTCTCCGGAATT
AGCATGCTCTTCTCGGCTGAAGCTCCTGCATTTGCGGCTGCCTTCTTCAC
TTTTTCCTTACGCTGCGCCTGCTGGGACTCCTGGACGAGAGCCTCGGCCA
CGCTGTCAGTTTGGCCGGGAATGCGGTAGCCATTCTCCTTCATCTTGGCC
GCCATAAAGGTCACCTCCTGAACGCTGCGGTTCATCGACTCGGCGATAGT
GTTCCAGCGGCTGCCAGCTCCGCCAGGATACTTTTTTACCAAGCGAATCA
GCTCGGTAAGATCCTCGTCAGTCCAGAAGCCGCCGCTCACCGTGCTCTTC
TGGGAAGCTGGACGAACTGCATCGTCATCTGTCAATTCGCGAGTCTGAAT
CTGCGAATAGCCGCGCAATTCTTCCTCGGTCTTCTCTGGAGCCTTGCTGT
TCTGCTTGCGCTTCCGCAGATTCTCCTTGTGCTCCTTGCGAAGGCGCGCC
TGCTC
BO07529.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7556-PA | 1569 | CG7556-RA | 730..1566 | 855..19 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7556-RB | 2893 | CG7556-RB | 881..1717 | 855..19 | 4185 | 100 | Minus |
| CG7556-RA | 2005 | CG7556-RA | 881..1717 | 855..19 | 4185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19177285..19177964 | 19..698 | 3400 | 100 | Plus |
| X | 23542271 | X | 19178040..19178198 | 697..855 | 795 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 17:23:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 10324..10418 | 117..24 | 148 | 63.2 | Minus |
BO07529.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:21 Download gff for
BO07529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-PA | 730..1569 | 18..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:44 Download gff for
BO07529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-PA | 730..1569 | 18..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:43:34 Download gff for
BO07529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-RA | 881..1717 | 19..855 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:35 Download gff for
BO07529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-RA | 881..1717 | 19..855 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:35 Download gff for
BO07529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19177285..19177962 | 19..696 | 100 | <- | Plus |
| X | 19178040..19178198 | 697..855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:43:34 Download gff for
BO07529.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19071318..19071995 | 19..696 | 100 | <- | Plus |
| arm_X | 19072073..19072231 | 697..855 | 100 | | Plus |
BO07529.5prime Sequence
760 bp (759 high quality bases) assembled on 2006-01-06
> BO07529.5prime
GAAGTTATCAGTCGACATGATGATGCGACCGGAGCTGACGCTGGCCGGCC
TCCTGCTGCTCTGCGCCACTGGCGCCAGCGCCTGGCACTCGGAGGAACTG
GAGATCTTTGACTTGGTCGAGGAGGTAAACCGCAACTTCTACGAGTTCAT
GGGCATCAACCAAACGGCAACGGGCGCCGAGGTGAAGCGCGCCTTCCGCA
CCCTGTCCATTGTCCTGCATCCGGACAAGAATCCGGCCGAGGATGCCAAC
ATCCAGTTCCGCAACCTCGTTTCCATCTACGAGGTTCTCAAAGATCCGTC
GCGCCGAGAGAAGTACGACCGGGTACTGAAGGAGGGCATGCCCAACTGGA
AGTCTGCCCTCTACTATTACCGACGTATGCGCAAGATCGGGCTCTATGAG
GGCGCCTTTATCCTCTTCCTGATAACCACCGTGGGCCAGTATCTATTCGC
CTGGGCGGCCTACCTCGAGAAGAAGTACACCGCCGAACAGGTCTTTGGCA
CCAAGCTGAAGAAGCTGCAGAAGAAGAACAAGAACATCGACATGGACGTG
ATCCTTAGCGAGATACCGATGCCCTCGCTACTCAACACCCTGCCCATCCA
GATCCCCTTGGCCCTGTGGAACCTGCCGCGCACCATCAAGAACGGATTCA
GCAAGGCCAACGAGCTAAAGGAACTCGCCCTGGAGAAGCGCAGGCAGGAA
CTGGAGGCCGTCCGTCGTCAGGAGGAACTGGAACGGGAGGCCGAGGAGCA
GGCGCGCCTT
BO07529.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7556-PA | 1569 | CG7556-RA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7556-RB | 2893 | CG7556-RB | 152..895 | 17..760 | 3720 | 100 | Plus |
| CG7556-RA | 2005 | CG7556-RA | 152..895 | 17..760 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19178992..19179679 | 704..17 | 3410 | 99.7 | Minus |
| X | 23542271 | X | 19178184..19178247 | 760..697 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:36:45 has no hits.
BO07529.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:22 Download gff for
BO07529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-PA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:45 Download gff for
BO07529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-PA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:09:29 Download gff for
BO07529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-RA | 142..895 | 8..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:32 Download gff for
BO07529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-RA | 142..895 | 8..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:32 Download gff for
BO07529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19178184..19178247 | 697..760 | 100 | <- | Minus |
| X | 19179000..19179689 | 8..696 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:09:29 Download gff for
BO07529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19072217..19072280 | 697..760 | 100 | <- | Minus |
| arm_X | 19073033..19073722 | 8..696 | 99 | | Minus |
BO07529.complete Sequence
1600 bp (1600 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630825
> BO07529.complete
GAAGTTATCAGTCGACATGATGATGCGACCGGAGCTGACGCTGGCCGGCC
TCCTGCTGCTCTGCGCCACTGGCGCCAGCGCCTGGCACTCGGAGGAACTG
GAGATCTTTGACTTGGTCGAGGAGGTAAACCGCAACTTCTACGAGTTCAT
GGGCATCAACCAAACGGCAACGGGCGCCGAGGTGAAGCGCGCCTTCCGCA
CCCTGTCCATTGTCCTGCATCCGGACAAGAATCCGGCCGAGGATGCCAAC
ATCCAGTTCCGCAACCTCGTTTCCATCTACGAGGTTCTCAAAGATCCGTC
GCGCCGAGAGAAGTACGACCGGGTACTGAAGGAGGGCATGCCCAACTGGA
AGTCTGCCCTCTACTATTACCGACGTATGCGCAAGATCGGGCTCTATGAG
GGCGCCTTTATCCTCTTCCTGATAACCACCGTGGGCCAGTATCTATTCGC
CTGGGCGGCCTACCTCGAGAAGAAGTACACCGCCGAACAGGTCTTTGGCA
CCAAGCTGAAGAAGCTGCAGAAGAAGAACAAGAACATCGACATGGACGTG
ATCCTTAGCGAGATACCGATGCCCTCGCTACTCAACACCCTGCCCATCCA
GATCCCCTTGGCCCTGTGGAACCTGCCGCGCACCATCAAGAACGGATTCA
GCAAGGCCAACGAGCTAAAGGAACTCGCCCTGGAGAAGCGCAGGCAGGAA
CTGGAGGCCGTCCGTCGTCAGGAGGAACTGGAACGGGAGGCCGAGGAGCA
GGCGCGCCTTCGCAAGGAGCACAAGGAGAATCTGCGGAAGCGCAAGCAGA
ACAGCAAGGCTCCAGAGAAGACCGAGGAAGAATTGCGCGGCTATTCGCAG
ATTCAGACTCGCGAATTGACAGATGACGATGCAGTTCGTCCAGCTTCCCA
GAAGAGCACGGTGAGCGGCGGCTTCTGGACTGACGAGGATCTTACCGAGC
TGATTCGCTTGGTAAAAAAGTATCCTGGCGGAGCTGGCAGCCGCTGGAAC
ACTATCGCCGAGTCGATGAACCGCAGCGTTCAGGAGGTGACCTTTATGGC
GGCCAAGATGAAGGAGAATGGCTACCGCATTCCCGGCCAAACTGACAGCG
TGGCCGAGGCTCTCGTCCAGGAGTCCCAGCAGGCGCAGCGTAAGGAAAAA
GTGAAGAAGGCAGCCGCAAATGCAGGAGCTTCAGCCGAGAAGAGCATGCT
AATTCCGGAGACCAACTGGACGCAAGAGCAGCAGCGCGCCCTGGAGGCGG
CGATAGTCAAGTACCGGAAGACGGCCGGCGGAGACCGTTGGCAGAAGATC
GCCAACAGTGTGCCGGAGAAGACCAAGGAGGAGTGCCTGGTGCGCTACAA
GTATCTCTGCGAGCTGGTCAAGACGCAGAAGCGGGCCGAGGAGGAGGCCA
ACGAGCCGGACGAGGATGCGGCCGCCATCGAGGAAGAGCTCCCCGAGGAG
GAGCCCCTTGCGCCGCCAGAACCGGAAGTGGCGCCAGCCGCCAAGAAGCT
CAGCAAGCGGGAGCAGCGTCGCCGTAAGCGGGACTTATCCAGCGGCGAGG
ACTCGGACGATGCATATCAGTACGAGATCAGTGCAAGCTTTCTAGACCAT
BO07529.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7556-RB | 1569 | CG7556-PB | 1..1566 | 17..1582 | 7830 | 100 | Plus |
| CG7556-RA | 1569 | CG7556-PA | 1..1566 | 17..1582 | 7830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7556-RB | 2893 | CG7556-RB | 152..1717 | 17..1582 | 7830 | 100 | Plus |
| CG7556-RA | 2005 | CG7556-RA | 152..1717 | 17..1582 | 7830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:46:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19178992..19179679 | 704..17 | 3410 | 99.7 | Minus |
| X | 23542271 | X | 19177285..19177964 | 1582..903 | 3400 | 100 | Minus |
| X | 23542271 | X | 19178040..19178247 | 904..697 | 1040 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 10324..10418 | 1484..1577 | 148 | 63.2 | Plus |
BO07529.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:55 Download gff for
BO07529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-RA | 1..1569 | 17..1583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:48 Download gff for
BO07529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-RA | 267..1842 | 8..1582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:58 Download gff for
BO07529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-RA | 152..1717 | 17..1584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:56 Download gff for
BO07529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-RA | 267..1842 | 8..1582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:37 Download gff for
BO07529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-RA | 152..1717 | 17..1584 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:37 Download gff for
BO07529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19177283..19177962 | 905..1584 | 99 | <- | Minus |
| X | 19178040..19178247 | 697..904 | 100 | <- | Minus |
| X | 19179000..19179679 | 17..696 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:58 Download gff for
BO07529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19071316..19071995 | 905..1584 | 99 | <- | Minus |
| arm_X | 19072073..19072280 | 697..904 | 100 | <- | Minus |
| arm_X | 19073033..19073712 | 17..696 | 100 | | Minus |
BO07529.pep Sequence
Translation from 16 to 1600
> BO07529.pep
MMMRPELTLAGLLLLCATGASAWHSEELEIFDLVEEVNRNFYEFMGINQT
ATGAEVKRAFRTLSIVLHPDKNPAEDANIQFRNLVSIYEVLKDPSRREKY
DRVLKEGMPNWKSALYYYRRMRKIGLYEGAFILFLITTVGQYLFAWAAYL
EKKYTAEQVFGTKLKKLQKKNKNIDMDVILSEIPMPSLLNTLPIQIPLAL
WNLPRTIKNGFSKANELKELALEKRRQELEAVRRQEELEREAEEQARLRK
EHKENLRKRKQNSKAPEKTEEELRGYSQIQTRELTDDDAVRPASQKSTVS
GGFWTDEDLTELIRLVKKYPGGAGSRWNTIAESMNRSVQEVTFMAAKMKE
NGYRIPGQTDSVAEALVQESQQAQRKEKVKKAAANAGASAEKSMLIPETN
WTQEQQRALEAAIVKYRKTAGGDRWQKIANSVPEKTKEECLVRYKYLCEL
VKTQKRAEEEANEPDEDAAAIEEELPEEEPLAPPEPEVAPAAKKLSKREQ
RRRKRDLSSGEDSDDAYQYEISASFLDH
BO07529.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7556-PB | 522 | CG7556-PB | 1..522 | 1..522 | 2661 | 100 | Plus |
| CG7556-PA | 522 | CG7556-PA | 1..522 | 1..522 | 2661 | 100 | Plus |
| CG5001-PC | 346 | CG5001-PC | 1..72 | 37..108 | 169 | 40.3 | Plus |
| CG5001-PD | 350 | CG5001-PD | 1..72 | 37..108 | 169 | 40.3 | Plus |
| CG5001-PA | 350 | CG5001-PA | 1..72 | 37..108 | 169 | 40.3 | Plus |
