Clone BO07531 Report

Search the DGRC for BO07531

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG1309-RA
Protein status:BO07531.pep: validated full length
Sequenced Size:1606

Clone Sequence Records

BO07531.3prime Sequence

846 bp (844 high quality bases) assembled on 2006-01-06

> BO07531.3prime
ATGGTCTAGAAAGCTTGCGGTGAACACAAATCCCTGCTCAGTGGGTATGT
CCCACGGCATGGTAAAGAACTCCCCGGGCAGCTGGGTGCAGTGCGTCGAG
TTATAGTCACGTAAATGCTTGCGCAGCAAGAACACAGCCATCAGATTGCG
CACCTCCTCCGAGTAATCTGCTCCAATGTTCATGGGGAATGACTTGCCCT
CGTCAGAGGCGTAGGTGATCAGGCGCGACATGCACAGCTTCTCGTCGGCG
ACGGGGATACTGTATGGTTCCAGGGGCTTAGACAGCAGCCCCTTGGCCTT
ATTCAACTGGGAAGCCCCAAAAATGTTGGGATACCGGTGCTTGAGCACTG
ACAAGACCAAGAAATTTCCGCGGTTTGTGTCAATGTGGTTGTCCTCTGCA
ATGATCTCATCCTCAGTGCGGCGAATAAAGGATATGGGTCCATTGAACTC
GTTGGCCAGTTCGGCATTGTTCAAATTACAGTAGTTTCGAATGGCTACCT
TGACAATGCCCGCCAGTGCAGCTGGCATGCGAGGAACGGCCAAGTAGAGC
ACATCGTCGAAGGTGGCGTCTAGTACCACTCCCTTGACATCCGGATACAC
AGAGGCAGCGTATAGTGTACTAAAGCCACCAATGCTCCAGCCATACAAAA
TTATATCCTCTACGGGGAACCTAAGATTGTTGATGGCAAACTGCACCACG
GCATCGATGGCGTTCTTGTCCTGGTGGGGATGAGGAGTGCCTGTGCTGCC
GGCAAATCCGGGATGATTCCAGCCCAAAACGGAATACTTTAAGGCCACTG
GGGTGGCCATAATGCCCACTTCATAAAAACCGGCATTGCCCTCGGA

BO07531.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1309-PA 1575 CG1309-RA 745..1572 846..19 4140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1309-RA 1859 CG1309-RA 858..1685 846..19 4140 100 Minus
CG11586-RA 1115 CG11586-RA 943..1051 19..127 545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4260520..4260972 846..394 2265 100 Minus
3L 28110227 3L 4261038..4261305 394..127 1340 100 Minus
3L 28110227 3L 4261361..4261469 127..19 545 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:25:24 has no hits.

BO07531.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:25 Download gff for BO07531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1309-PA 746..1575 15..845 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:49 Download gff for BO07531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1309-PA 746..1575 15..845 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:55 Download gff for BO07531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 859..1691 12..845 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:54:48 Download gff for BO07531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 859..1691 12..845 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:54:48 Download gff for BO07531.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4260521..4260971 395..845 100 -> Minus
3L 4261038..4261305 127..394 100 -> Minus
3L 4261362..4261475 12..126 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:55 Download gff for BO07531.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4260521..4260971 395..845 100 -> Minus
arm_3L 4261038..4261305 127..394 100 -> Minus
arm_3L 4261362..4261475 12..126 98   Minus

BO07531.5prime Sequence

886 bp (786 high quality bases) assembled on 2006-01-06

> BO07531.5prime
GAAGTTATCAGTCGACATGAGTTTCCTAAATTACGTGTTTGGCCCCAACC
TCTACATGGAATACCGCGGTGTGCCGGAGCCGCAGCGCAAGATGTACGAG
GCAGGTGCCGTGGAAAAGTTCGGGGAGCAGATTCTATCGACGCTATCGGT
TATGTGGTCCGTGGGCTATTATACTTCTCCGCTGCTCGTCACATTCCTAT
ACCGACGCGGCTACCTGGTGACCGATTCCATACCGACGCTGGCCAAGATC
ACCACCAGCGTGGGCCTCATCGTCATCCTATCGCTGGTGATGCGCGGCCT
GGGGCGCAAGCAATCGCGCTCCTACTCCAACATGATTAAGGCCCTCGTCC
GAGCAAAGTCCTCCAAGGCACCAGGAGATGCCAACAGCGAGCTGCGTCGC
TTCGACATCGAGTTCAACGCTTGGCCGGTGGACTTTGATGTGAAAGCTCT
AACCGGTGATACCAAAAAGCCGGTGGTTACGGCTAGAAGGCGGGAGCCCA
TCCAGCTGGCGACACTGCCCTGTGAGGCCATCGCCTACCTGGCCATAAAC
ACCTTTGGGCTCTCCATGATCTATCCGGGTTCGGTCAAACTACTCCAGAA
ACTTATGAGACCCATGCTGATCTCCGGACGCGCCAAGCTCATCGAGGATG
ACAACGGCATCCGCTACAAGGTTAAGACCATTGACTCGAACGAAATCGAT
ACGTTGTTCATTGACAATCGCCCAAACAACGTGGGAAATGGCAAGACTCT
AGTCATTTGCTCCGAGGGCAATGCCGGTTTTTATGAAGTGGGCATTATGG
CCACCCCAGTGGCCTTAAAGTATTCCGTTTTGGGCTGGAATCATCCCGGA
TTTGCCGGCAGCACAGGCACTCCTCATCCCACCAGG

BO07531.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1309-PA 1575 CG1309-RA 1..864 17..880 4320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1309-RA 1859 CG1309-RA 114..984 17..886 4330 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4259743..4260057 142..456 1575 100 Plus
3L 28110227 3L 4260368..4260639 609..880 1360 100 Plus
3L 28110227 3L 4260108..4260261 456..609 770 100 Plus
3L 28110227 3L 4259543..4259668 17..142 630 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:05:23 has no hits.

BO07531.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:26 Download gff for BO07531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1309-PA 1..871 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:51 Download gff for BO07531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1309-PA 1..871 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:04 Download gff for BO07531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 114..984 17..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:35 Download gff for BO07531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 114..984 17..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:35 Download gff for BO07531.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4259744..4260057 143..456 100 -> Plus
3L 4259543..4259668 17..142 100 -> Plus
3L 4260109..4260260 457..608 100 -> Plus
3L 4260368..4260646 609..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:04 Download gff for BO07531.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4259543..4259668 17..142 100 -> Plus
arm_3L 4259744..4260057 143..456 100 -> Plus
arm_3L 4260109..4260260 457..608 100 -> Plus
arm_3L 4260368..4260646 609..886 99   Plus

BO07531.complete Sequence

1606 bp (1606 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630826

> BO07531.complete
GAAGTTATCAGTCGACATGAGTTTCCTAAATTACGTGTTTGGCCCCAACC
TCTACATGGAATACCGCGGTGTGCCGGAGCCGCAGCGCAAGATGTACGAG
GCAGGTGCCGTGGAAAAGTTCGGGGAGCAGATTCTATCGACGCTATCGGT
TATGTGGTCCGTGGGCTATTATACTTCTCCGCTGCTCGTCACATTCCTAT
ACCGACGCGGCTACCTGGTGACCGATTCCATACCGACGCTGGCCAAGATC
ACCACCAGCGTGGGCCTCATCGTCATCCTATCGCTGGTGATGCGCGGCCT
GGGGCGCAAGCAATCGCGCTCCTACTCCAACATGATTAAGGCCCTCGTCC
GAGCAAAGTCCTCCAAGGCACCAGGAGATGCCAACAGCGAGCTGCGTCGC
TTCGACATCGAGTTCAACGCTTGGCCGGTGGACTTTGATGTGAAAGCTCT
AACCGGTGATACCAAAAAGCCGGTGGTTACGGCTAGAAGGCGGGAGCCCA
TCCAGCTGGCGACACTGCCCTGTGAGGCCATCGCCTACCTGGCCATAAAC
ACCTTTGGGCTCTCCATGATCTATCCGGGTTCGGTCAAACTACTCCAGAA
ACTTATGAGACCCATGCTGATCTCCGGACGCGCCAAGCTCATCGAGGATG
ACAACGGCATCCGCTACAAGGTTAAGACCATTGACTCGAACGAAATCGAT
ACGTTGTTCATTGACAATCGCCCAAACAACGTGGGAAATGGCAAGACTCT
AGTCATTTGCTCCGAGGGCAATGCCGGTTTTTATGAAGTGGGCATTATGG
CCACCCCAGTGGCCTTAAAGTATTCCGTTTTGGGCTGGAATCATCCCGGA
TTTGCCGGCAGCACAGGCACTCCTCATCCCCACCAGGACAAGAACGCCAT
CGATGCCGTGGTGCAGTTTGCCATCAACAATCTTAGGTTCCCCGTAGAGG
ATATAATTTTGTATGGCTGGAGCATTGGTGGCTTTAGTACACTATACGCT
GCCTCTGTGTATCCGGATGTCAAGGGAGTGGTACTAGACGCCACCTTCGA
CGATGTGCTCTACTTGGCCGTTCCTCGCATGCCAGCTGCACTGGCGGGCA
TTGTCAAGGTAGCCATTCGAAACTACTGTAATTTGAACAATGCCGAACTG
GCCAACGAGTTCAATGGACCCATATCCTTTATTCGCCGCACTGAGGATGA
GATCATTGCAGAGGACAACCACATTGACACAAACCGCGGAAATTTCTTGG
TCTTGTCAGTGCTCAAGCACCGGTATCCCAACATTTTTGGGGCTTCCCAG
TTGAATAAGGCCAAGGGGCTGCTGTCTAAGCCCCTGGAACCATACAGTAT
CCCCGTCGCCGACGAGAAGCTGTGCATGTCGCGCCTGATCACCTACGCCT
CTGACGAGGGCAAGTCATTCCCCATGAACATTGGAGCAGATTACTCGGAG
GAGGTGCGCAATCTGATGGCTGTGTTCTTGCTGCGCAAGCATTTACGTGA
CTATAACTCGACGCACTGCACCCAGCTGCCCGGGGAGTTCTTTACCATGC
CGTGGGACATACCCACTGAGCAGGGATTTGTGTTCACCGCAAGCTTTCTA
GACCAT

BO07531.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1309-RA 1575 CG1309-PA 1..1572 17..1588 7860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1309-RA 1859 CG1309-RA 114..1685 17..1588 7860 100 Plus
CG11586-RA 1115 CG11586-RA 943..1051 1588..1480 545 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4260368..4260972 609..1213 3025 100 Plus
3L 28110227 3L 4259743..4260057 142..456 1575 100 Plus
3L 28110227 3L 4261038..4261305 1213..1480 1340 100 Plus
3L 28110227 3L 4260108..4260261 456..609 770 100 Plus
3L 28110227 3L 4259543..4259668 17..142 630 100 Plus
3L 28110227 3L 4261361..4261469 1480..1588 545 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:02:38 has no hits.

BO07531.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:57 Download gff for BO07531.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 1..1575 17..1592 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:50 Download gff for BO07531.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 125..1702 17..1595 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:19 Download gff for BO07531.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 114..1685 17..1590 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:57 Download gff for BO07531.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 125..1702 17..1595 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:22 Download gff for BO07531.complete
Subject Subject Range Query Range Percent Splice Strand
CG1309-RA 114..1685 17..1590 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:22 Download gff for BO07531.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4261362..4261469 1481..1590 98   Plus
3L 4261038..4261305 1213..1480 100 -> Plus
3L 4260368..4260971 609..1212 100 -> Plus
3L 4259543..4259668 17..142 100 -> Plus
3L 4259744..4260057 143..456 100 -> Plus
3L 4260109..4260260 457..608 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:19 Download gff for BO07531.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4259543..4259668 17..142 100 -> Plus
arm_3L 4259744..4260057 143..456 100 -> Plus
arm_3L 4260109..4260260 457..608 100 -> Plus
arm_3L 4260368..4260971 609..1212 100 -> Plus
arm_3L 4261038..4261305 1213..1480 100 -> Plus
arm_3L 4261362..4261469 1481..1590 98   Plus

BO07531.pep Sequence

Translation from 16 to 1606

> BO07531.pep
MSFLNYVFGPNLYMEYRGVPEPQRKMYEAGAVEKFGEQILSTLSVMWSVG
YYTSPLLVTFLYRRGYLVTDSIPTLAKITTSVGLIVILSLVMRGLGRKQS
RSYSNMIKALVRAKSSKAPGDANSELRRFDIEFNAWPVDFDVKALTGDTK
KPVVTARRREPIQLATLPCEAIAYLAINTFGLSMIYPGSVKLLQKLMRPM
LISGRAKLIEDDNGIRYKVKTIDSNEIDTLFIDNRPNNVGNGKTLVICSE
GNAGFYEVGIMATPVALKYSVLGWNHPGFAGSTGTPHPHQDKNAIDAVVQ
FAINNLRFPVEDIILYGWSIGGFSTLYAASVYPDVKGVVLDATFDDVLYL
AVPRMPAALAGIVKVAIRNYCNLNNAELANEFNGPISFIRRTEDEIIAED
NHIDTNRGNFLVLSVLKHRYPNIFGASQLNKAKGLLSKPLEPYSIPVADE
KLCMSRLITYASDEGKSFPMNIGADYSEEVRNLMAVFLLRKHLRDYNSTH
CTQLPGEFFTMPWDIPTEQGFVFTASFLDH

BO07531.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1309-PA 524 CG1309-PA 1..524 1..524 2718 100 Plus