Clone Sequence Records
BO07531.3prime Sequence
846 bp (844 high quality bases) assembled on 2006-01-06
> BO07531.3prime
ATGGTCTAGAAAGCTTGCGGTGAACACAAATCCCTGCTCAGTGGGTATGT
CCCACGGCATGGTAAAGAACTCCCCGGGCAGCTGGGTGCAGTGCGTCGAG
TTATAGTCACGTAAATGCTTGCGCAGCAAGAACACAGCCATCAGATTGCG
CACCTCCTCCGAGTAATCTGCTCCAATGTTCATGGGGAATGACTTGCCCT
CGTCAGAGGCGTAGGTGATCAGGCGCGACATGCACAGCTTCTCGTCGGCG
ACGGGGATACTGTATGGTTCCAGGGGCTTAGACAGCAGCCCCTTGGCCTT
ATTCAACTGGGAAGCCCCAAAAATGTTGGGATACCGGTGCTTGAGCACTG
ACAAGACCAAGAAATTTCCGCGGTTTGTGTCAATGTGGTTGTCCTCTGCA
ATGATCTCATCCTCAGTGCGGCGAATAAAGGATATGGGTCCATTGAACTC
GTTGGCCAGTTCGGCATTGTTCAAATTACAGTAGTTTCGAATGGCTACCT
TGACAATGCCCGCCAGTGCAGCTGGCATGCGAGGAACGGCCAAGTAGAGC
ACATCGTCGAAGGTGGCGTCTAGTACCACTCCCTTGACATCCGGATACAC
AGAGGCAGCGTATAGTGTACTAAAGCCACCAATGCTCCAGCCATACAAAA
TTATATCCTCTACGGGGAACCTAAGATTGTTGATGGCAAACTGCACCACG
GCATCGATGGCGTTCTTGTCCTGGTGGGGATGAGGAGTGCCTGTGCTGCC
GGCAAATCCGGGATGATTCCAGCCCAAAACGGAATACTTTAAGGCCACTG
GGGTGGCCATAATGCCCACTTCATAAAAACCGGCATTGCCCTCGGA
BO07531.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1309-PA | 1575 | CG1309-RA | 745..1572 | 846..19 | 4140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:25:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1309-RA | 1859 | CG1309-RA | 858..1685 | 846..19 | 4140 | 100 | Minus |
CG11586-RA | 1115 | CG11586-RA | 943..1051 | 19..127 | 545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4260520..4260972 | 846..394 | 2265 | 100 | Minus |
3L | 28110227 | 3L | 4261038..4261305 | 394..127 | 1340 | 100 | Minus |
3L | 28110227 | 3L | 4261361..4261469 | 127..19 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:25:24 has no hits.
BO07531.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:25 Download gff for
BO07531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-PA | 746..1575 | 15..845 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:49 Download gff for
BO07531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-PA | 746..1575 | 15..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:55 Download gff for
BO07531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 859..1691 | 12..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:54:48 Download gff for
BO07531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 859..1691 | 12..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:54:48 Download gff for
BO07531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4260521..4260971 | 395..845 | 100 | -> | Minus |
3L | 4261038..4261305 | 127..394 | 100 | -> | Minus |
3L | 4261362..4261475 | 12..126 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:55 Download gff for
BO07531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4260521..4260971 | 395..845 | 100 | -> | Minus |
arm_3L | 4261038..4261305 | 127..394 | 100 | -> | Minus |
arm_3L | 4261362..4261475 | 12..126 | 98 | | Minus |
BO07531.5prime Sequence
886 bp (786 high quality bases) assembled on 2006-01-06
> BO07531.5prime
GAAGTTATCAGTCGACATGAGTTTCCTAAATTACGTGTTTGGCCCCAACC
TCTACATGGAATACCGCGGTGTGCCGGAGCCGCAGCGCAAGATGTACGAG
GCAGGTGCCGTGGAAAAGTTCGGGGAGCAGATTCTATCGACGCTATCGGT
TATGTGGTCCGTGGGCTATTATACTTCTCCGCTGCTCGTCACATTCCTAT
ACCGACGCGGCTACCTGGTGACCGATTCCATACCGACGCTGGCCAAGATC
ACCACCAGCGTGGGCCTCATCGTCATCCTATCGCTGGTGATGCGCGGCCT
GGGGCGCAAGCAATCGCGCTCCTACTCCAACATGATTAAGGCCCTCGTCC
GAGCAAAGTCCTCCAAGGCACCAGGAGATGCCAACAGCGAGCTGCGTCGC
TTCGACATCGAGTTCAACGCTTGGCCGGTGGACTTTGATGTGAAAGCTCT
AACCGGTGATACCAAAAAGCCGGTGGTTACGGCTAGAAGGCGGGAGCCCA
TCCAGCTGGCGACACTGCCCTGTGAGGCCATCGCCTACCTGGCCATAAAC
ACCTTTGGGCTCTCCATGATCTATCCGGGTTCGGTCAAACTACTCCAGAA
ACTTATGAGACCCATGCTGATCTCCGGACGCGCCAAGCTCATCGAGGATG
ACAACGGCATCCGCTACAAGGTTAAGACCATTGACTCGAACGAAATCGAT
ACGTTGTTCATTGACAATCGCCCAAACAACGTGGGAAATGGCAAGACTCT
AGTCATTTGCTCCGAGGGCAATGCCGGTTTTTATGAAGTGGGCATTATGG
CCACCCCAGTGGCCTTAAAGTATTCCGTTTTGGGCTGGAATCATCCCGGA
TTTGCCGGCAGCACAGGCACTCCTCATCCCACCAGG
BO07531.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1309-PA | 1575 | CG1309-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1309-RA | 1859 | CG1309-RA | 114..984 | 17..886 | 4330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4259743..4260057 | 142..456 | 1575 | 100 | Plus |
3L | 28110227 | 3L | 4260368..4260639 | 609..880 | 1360 | 100 | Plus |
3L | 28110227 | 3L | 4260108..4260261 | 456..609 | 770 | 100 | Plus |
3L | 28110227 | 3L | 4259543..4259668 | 17..142 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:05:23 has no hits.
BO07531.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:26 Download gff for
BO07531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-PA | 1..871 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:51 Download gff for
BO07531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-PA | 1..871 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:04 Download gff for
BO07531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 114..984 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:35 Download gff for
BO07531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 114..984 | 17..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:35 Download gff for
BO07531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4259744..4260057 | 143..456 | 100 | -> | Plus |
3L | 4259543..4259668 | 17..142 | 100 | -> | Plus |
3L | 4260109..4260260 | 457..608 | 100 | -> | Plus |
3L | 4260368..4260646 | 609..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:04 Download gff for
BO07531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4259543..4259668 | 17..142 | 100 | -> | Plus |
arm_3L | 4259744..4260057 | 143..456 | 100 | -> | Plus |
arm_3L | 4260109..4260260 | 457..608 | 100 | -> | Plus |
arm_3L | 4260368..4260646 | 609..886 | 99 | | Plus |
BO07531.complete Sequence
1606 bp (1606 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630826
> BO07531.complete
GAAGTTATCAGTCGACATGAGTTTCCTAAATTACGTGTTTGGCCCCAACC
TCTACATGGAATACCGCGGTGTGCCGGAGCCGCAGCGCAAGATGTACGAG
GCAGGTGCCGTGGAAAAGTTCGGGGAGCAGATTCTATCGACGCTATCGGT
TATGTGGTCCGTGGGCTATTATACTTCTCCGCTGCTCGTCACATTCCTAT
ACCGACGCGGCTACCTGGTGACCGATTCCATACCGACGCTGGCCAAGATC
ACCACCAGCGTGGGCCTCATCGTCATCCTATCGCTGGTGATGCGCGGCCT
GGGGCGCAAGCAATCGCGCTCCTACTCCAACATGATTAAGGCCCTCGTCC
GAGCAAAGTCCTCCAAGGCACCAGGAGATGCCAACAGCGAGCTGCGTCGC
TTCGACATCGAGTTCAACGCTTGGCCGGTGGACTTTGATGTGAAAGCTCT
AACCGGTGATACCAAAAAGCCGGTGGTTACGGCTAGAAGGCGGGAGCCCA
TCCAGCTGGCGACACTGCCCTGTGAGGCCATCGCCTACCTGGCCATAAAC
ACCTTTGGGCTCTCCATGATCTATCCGGGTTCGGTCAAACTACTCCAGAA
ACTTATGAGACCCATGCTGATCTCCGGACGCGCCAAGCTCATCGAGGATG
ACAACGGCATCCGCTACAAGGTTAAGACCATTGACTCGAACGAAATCGAT
ACGTTGTTCATTGACAATCGCCCAAACAACGTGGGAAATGGCAAGACTCT
AGTCATTTGCTCCGAGGGCAATGCCGGTTTTTATGAAGTGGGCATTATGG
CCACCCCAGTGGCCTTAAAGTATTCCGTTTTGGGCTGGAATCATCCCGGA
TTTGCCGGCAGCACAGGCACTCCTCATCCCCACCAGGACAAGAACGCCAT
CGATGCCGTGGTGCAGTTTGCCATCAACAATCTTAGGTTCCCCGTAGAGG
ATATAATTTTGTATGGCTGGAGCATTGGTGGCTTTAGTACACTATACGCT
GCCTCTGTGTATCCGGATGTCAAGGGAGTGGTACTAGACGCCACCTTCGA
CGATGTGCTCTACTTGGCCGTTCCTCGCATGCCAGCTGCACTGGCGGGCA
TTGTCAAGGTAGCCATTCGAAACTACTGTAATTTGAACAATGCCGAACTG
GCCAACGAGTTCAATGGACCCATATCCTTTATTCGCCGCACTGAGGATGA
GATCATTGCAGAGGACAACCACATTGACACAAACCGCGGAAATTTCTTGG
TCTTGTCAGTGCTCAAGCACCGGTATCCCAACATTTTTGGGGCTTCCCAG
TTGAATAAGGCCAAGGGGCTGCTGTCTAAGCCCCTGGAACCATACAGTAT
CCCCGTCGCCGACGAGAAGCTGTGCATGTCGCGCCTGATCACCTACGCCT
CTGACGAGGGCAAGTCATTCCCCATGAACATTGGAGCAGATTACTCGGAG
GAGGTGCGCAATCTGATGGCTGTGTTCTTGCTGCGCAAGCATTTACGTGA
CTATAACTCGACGCACTGCACCCAGCTGCCCGGGGAGTTCTTTACCATGC
CGTGGGACATACCCACTGAGCAGGGATTTGTGTTCACCGCAAGCTTTCTA
GACCAT
BO07531.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1309-RA | 1575 | CG1309-PA | 1..1572 | 17..1588 | 7860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1309-RA | 1859 | CG1309-RA | 114..1685 | 17..1588 | 7860 | 100 | Plus |
CG11586-RA | 1115 | CG11586-RA | 943..1051 | 1588..1480 | 545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4260368..4260972 | 609..1213 | 3025 | 100 | Plus |
3L | 28110227 | 3L | 4259743..4260057 | 142..456 | 1575 | 100 | Plus |
3L | 28110227 | 3L | 4261038..4261305 | 1213..1480 | 1340 | 100 | Plus |
3L | 28110227 | 3L | 4260108..4260261 | 456..609 | 770 | 100 | Plus |
3L | 28110227 | 3L | 4259543..4259668 | 17..142 | 630 | 100 | Plus |
3L | 28110227 | 3L | 4261361..4261469 | 1480..1588 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:02:38 has no hits.
BO07531.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:57 Download gff for
BO07531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 1..1575 | 17..1592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:50 Download gff for
BO07531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 125..1702 | 17..1595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:19 Download gff for
BO07531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 114..1685 | 17..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:57 Download gff for
BO07531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 125..1702 | 17..1595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:22 Download gff for
BO07531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1309-RA | 114..1685 | 17..1590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:22 Download gff for
BO07531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4261362..4261469 | 1481..1590 | 98 | | Plus |
3L | 4261038..4261305 | 1213..1480 | 100 | -> | Plus |
3L | 4260368..4260971 | 609..1212 | 100 | -> | Plus |
3L | 4259543..4259668 | 17..142 | 100 | -> | Plus |
3L | 4259744..4260057 | 143..456 | 100 | -> | Plus |
3L | 4260109..4260260 | 457..608 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:19 Download gff for
BO07531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4259543..4259668 | 17..142 | 100 | -> | Plus |
arm_3L | 4259744..4260057 | 143..456 | 100 | -> | Plus |
arm_3L | 4260109..4260260 | 457..608 | 100 | -> | Plus |
arm_3L | 4260368..4260971 | 609..1212 | 100 | -> | Plus |
arm_3L | 4261038..4261305 | 1213..1480 | 100 | -> | Plus |
arm_3L | 4261362..4261469 | 1481..1590 | 98 | | Plus |
BO07531.pep Sequence
Translation from 16 to 1606
> BO07531.pep
MSFLNYVFGPNLYMEYRGVPEPQRKMYEAGAVEKFGEQILSTLSVMWSVG
YYTSPLLVTFLYRRGYLVTDSIPTLAKITTSVGLIVILSLVMRGLGRKQS
RSYSNMIKALVRAKSSKAPGDANSELRRFDIEFNAWPVDFDVKALTGDTK
KPVVTARRREPIQLATLPCEAIAYLAINTFGLSMIYPGSVKLLQKLMRPM
LISGRAKLIEDDNGIRYKVKTIDSNEIDTLFIDNRPNNVGNGKTLVICSE
GNAGFYEVGIMATPVALKYSVLGWNHPGFAGSTGTPHPHQDKNAIDAVVQ
FAINNLRFPVEDIILYGWSIGGFSTLYAASVYPDVKGVVLDATFDDVLYL
AVPRMPAALAGIVKVAIRNYCNLNNAELANEFNGPISFIRRTEDEIIAED
NHIDTNRGNFLVLSVLKHRYPNIFGASQLNKAKGLLSKPLEPYSIPVADE
KLCMSRLITYASDEGKSFPMNIGADYSEEVRNLMAVFLLRKHLRDYNSTH
CTQLPGEFFTMPWDIPTEQGFVFTASFLDH
BO07531.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1309-PA | 524 | CG1309-PA | 1..524 | 1..524 | 2718 | 100 | Plus |