Clone BO07533 Report

Search the DGRC for BO07533

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptMfap1-RA
Protein status:BO07533.pep: validated full length
Sequenced Size:1468

Clone Sequence Records

BO07533.3prime Sequence

963 bp (843 high quality bases) assembled on 2006-01-06

> BO07533.3prime
ATGGTCTAGAAAGCTTGCCTCCATCTTTTTTCGCTTCGAGCCGGTGGGCT
TGTCAAACTGCTGCCTCATGCCGCCGGCGTGTTCGTTGTGGAACTTGATG
TTGCTGGATGACTCGGCGTACCAGGGCGAGTCGAACTTGGTGGTGTCCTG
GTCCACTAAATGAGTGTACTTGGTGCGGCCGCAGCGGCCGAAGTTCTTCA
CCTGCATCACCTTGGGCAGAATGGTCTTATCGAAGTGATCCTCCAGCGTG
GCCTGGGCGAAGTCGCGCTTGAGGACGTCGTTCTCCTCATCCAGGTAGAA
GGCACCACGATGATAGTACTTCTGCAGGAACTTGTACTTGCCCTTGGTGG
CCTTGTTGGTGACCACCTTGGGGTTCTGGCGCAGCTCCTGGCGTCGCTCC
TCTTCGGTCATGTTGCGCATGCGATCAATGTCCAGCTTCTCGCGTTCGAC
GTTATCACGTTCCTCGCGATCCCGCTTCATTCGCTTGAGTTCACGCAGCT
TCCAGGCCTCGTATTCCACCTCGTCGTTTTCGTCGTCCGTGCACACGTCC
TCGATGCAGGCCTCATTGGTCTCCGGCTTGGTCTTCTCCAGATCTTTCTT
GACGCTCTCCTCGACCATTCGCAGGGTGGCTCTTCTGCGCTCCTTGGCTG
CCCGCTTGGCCTCCGCCTCCAGCTGCTTCTGCTTCTGAGCCTCTCGCTCC
TTCTCCTGGATGGTGGCACGATCTCTCTTTCGGACGAAGAGCGGCTTCAG
GCGGGGTTCGTTGTCCTCCTCGCTTTCGGTCTCCTCCTCGTACTCGGAGC
TTTCTGATTCGGACGATTCCGACTGTTTCTCATCCTCTTTCTGTAGAACC
TCCTCCTCGCGCTGCTGCTGCAGCATGCGGGATCTCAGCTTGGTGCGCCG
GTTCTCCAGCTCTGTGTCGCTGAGCTCCGCATCCGTGTCGGATTCGGATG
CCAGTGTGATCTT

BO07533.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1017-PA 1437 CG1017-RA 490..1434 963..19 4725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
Mfap1-RA 1682 CG1017-RA 598..1542 963..19 4725 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1941726..1942237 963..452 2560 100 Minus
3L 28110227 3L 1942300..1942732 451..19 2165 100 Minus
Blast to na_te.dros performed 2015-02-12 23:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1057..1148 716..626 114 62.4 Minus

BO07533.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:29 Download gff for BO07533.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1017-PA 490..1437 18..963 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:55 Download gff for BO07533.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1017-PA 490..1437 18..963 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:41 Download gff for BO07533.3prime
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 598..1542 19..963 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:11 Download gff for BO07533.3prime
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 598..1542 19..963 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:11 Download gff for BO07533.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1941726..1942237 452..963 100 -> Minus
3L 1942300..1942732 19..451 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:41 Download gff for BO07533.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1941726..1942237 452..963 100 -> Minus
arm_3L 1942300..1942732 19..451 100   Minus

BO07533.5prime Sequence

884 bp (831 high quality bases) assembled on 2006-01-06

> BO07533.5prime
GAAGTTATCAGTCGACATGAGTGCAGCCACCGCCGCCGCCGCCGCTTCTG
GGATCCAGAGCACAGCGGGCGCCATTCCCATGCGCAATGAGAAAGGTGAA
TTGTCCATGCAAAAGGTGAAGGTGCAGCGATACATATCCGGTAAGCGACC
CGACTACGCCCGTGCGGACTCCAGTTCGGAGGAGAGCGACGACGATGACT
TCATTGACACCAGGAAGCGCCTTGAGCGCCACAAGGCGGAACGGCATAAG
CTGGAGCTCTCCCGTCAAGGCGGCAGCGCGGAGGGCGAAGAGCGGGCGGC
GGGTGAGGGCCAGGAGGAGGACGATGCCGAGGTGGACGATCCACGCCTCC
GAAGATTGCGGCAGCGACCCGTAGACATGGAGGACATGGAACGTGAGCGG
AGGGAACGCCACCGACACATCCACGAACCGGAAATCATGGAGAGTGACAG
CGAAGACGAGGAGGAAGACGAGGGAGCACAGGGAGCGATTCAGCGGGGCA
CCAATAAGATCACACTGGCATCCGAATCCGACACGGATGCGGAGCTCAGC
GACACAGAGCTGGAGAACCGGCGCACCAAGCTGAGATCCCGCATGCTGCA
GCAGCAGCGCGAGGAGGAGGTTCTACAGAAAGAGGATGAGAAACAGTCGG
AATCGTCCGAATCAGAAAGCTCCGAGTACGAGGAGGAGACCGAAAGCGAG
GAGGACAACGAACCCCGCCTGAAGCCGCTCTTCGTCCGAAAGAGAGATCG
TGCCACCATCCAGGAGAAGGAGCGAGAGGCTCAGAAGCAGAAGCAGCTGG
AGGCGGAGGCCAAGCGGGCAGCCAAGGAGCGCAGAAGAGCCACCCTGCGA
ATGGTCGAGGAGAGCGTCAAGAAAGATCTGGAGA

BO07533.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1017-PA 1437 CG1017-RA 1..868 17..884 4340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Mfap1-RA 1682 CG1017-RA 109..976 17..884 4340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1941314..1942104 94..884 3955 100 Plus
3L 28110227 3L 1941176..1941256 17..97 405 100 Plus
Blast to na_te.dros performed 2015-02-12 10:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1057..1148 753..843 114 62.4 Plus

BO07533.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:30 Download gff for BO07533.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1017-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:56 Download gff for BO07533.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1017-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:45:14 Download gff for BO07533.5prime
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 105..975 9..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:59:38 Download gff for BO07533.5prime
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 105..975 9..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:59:38 Download gff for BO07533.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1941172..1941254 9..95 95 -> Plus
3L 1941316..1942103 96..883 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:45:14 Download gff for BO07533.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1941172..1941254 9..95 95 -> Plus
arm_3L 1941316..1942103 96..883 100   Plus

BO07533.complete Sequence

1468 bp (1468 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630827

> BO07533.complete
GAAGTTATCAGTCGACATGAGTGCAGCCACCGCCGCCGCCGCCGCTTCTG
GGATCCAGAGCACAGCGGGCGCCATTCCCATGCGCAATGAGAAAGGTGAA
TTGTCCATGCAAAAGGTGAAGGTGCAGCGATACATATCCGGTAAGCGACC
CGACTACGCCCGTGCGGACTCCAGTTCGGAGGAGAGCGACGACGATGACT
TCATTGACACCAGGAAGCGCCTTGAGCGCCACAAGGCGGAACGGCATAAG
CTGGAGCTCTCCCGTCAAGGCGGCAGCGCGGAGGGCGAAGAGCGGGCGGC
GGGTGAGGGCCAGGAGGAGGACGATGCCGAGGTGGACGATCCACGCCTCC
GAAGATTGCGGCAGCGACCCGTAGACATGGAGGACATGGAACGTGAGCGG
AGGGAACGCCACCGACACATCCACGAACCGGAAATCATGGAGAGTGACAG
CGAAGACGAGGAGGAAGACGAGGGAGCACAGGGAGCGATTCAGCGGGGCA
CCAATAAGATCACACTGGCATCCGAATCCGACACGGATGCGGAGCTCAGC
GACACAGAGCTGGAGAACCGGCGCACCAAGCTGAGATCCCGCATGCTGCA
GCAGCAGCGCGAGGAGGAGGTTCTACAGAAAGAGGATGAGAAACAGTCGG
AATCGTCCGAATCAGAAAGCTCCGAGTACGAGGAGGAGACCGAAAGCGAG
GAGGACAACGAACCCCGCCTGAAGCCGCTCTTCGTCCGAAAGAGAGATCG
TGCCACCATCCAGGAGAAGGAGCGAGAGGCTCAGAAGCAGAAGCAGCTGG
AGGCGGAGGCCAAGCGGGCAGCCAAGGAGCGCAGAAGAGCCACCCTGCGA
ATGGTCGAGGAGAGCGTCAAGAAAGATCTGGAGAAGACCAAGCCGGAGAC
CAATGAGGCCTGCATCGAGGACGTGTGCACGGACGACGAAAACGACGAGG
TGGAATACGAGGCCTGGAAGCTGCGTGAACTCAAGCGAATGAAGCGGGAT
CGCGAGGAACGTGATAACGTCGAACGCGAGAAGCTGGACATTGATCGCAT
GCGCAACATGACCGAAGAGGAGCGACGCCAGGAGCTGCGCCAGAACCCCA
AGGTGGTCACCAACAAGGCCACCAAGGGCAAGTACAAGTTCCTGCAGAAG
TACTATCATCGTGGTGCCTTCTACCTGGATGAGGAGAACGACGTCCTCAA
GCGCGACTTCGCCCAGGCCACGCTGGAGGATCACTTCGATAAGACCATTC
TGCCCAAGGTGATGCAGGTGAAGAACTTCGGCCGCTGCGGCCGCACCAAG
TACACTCATTTAGTGGACCAGGACACCACCAAGTTCGACTCGCCCTGGTA
CGCCGAGTCATCCAGCAACATCAAGTTCCACAACGAACACGCCGGCGGCA
TGAGGCAGCAGTTTGACAAGCCCACCGGCTCGAAGCGAAAAAAGATGGAG
GCAAGCTTTCTAGACCAT

BO07533.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Mfap1-RA 1437 CG1017-PA 1..1434 17..1450 7170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Mfap1-RA 1682 CG1017-RA 109..1542 17..1450 7170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1941314..1942237 94..1017 4620 100 Plus
3L 28110227 3L 1942300..1942732 1018..1450 2165 100 Plus
3L 28110227 3L 1941176..1941256 17..97 405 100 Plus
Blast to na_te.dros performed 2014-11-27 20:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1057..1148 753..843 114 62.4 Plus

BO07533.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:58 Download gff for BO07533.complete
Subject Subject Range Query Range Percent Splice Strand
CG1017-RA 1..1437 17..1451 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:52 Download gff for BO07533.complete
Subject Subject Range Query Range Percent Splice Strand
CG1017-RA 111..1548 9..1450 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:01 Download gff for BO07533.complete
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 109..1542 17..1452 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:58 Download gff for BO07533.complete
Subject Subject Range Query Range Percent Splice Strand
CG1017-RA 111..1548 9..1450 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:33 Download gff for BO07533.complete
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 109..1542 17..1452 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:33 Download gff for BO07533.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1941176..1941254 17..95 100 -> Plus
3L 1941316..1942237 96..1017 100 -> Plus
3L 1942300..1942732 1018..1452 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:01 Download gff for BO07533.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1941176..1941254 17..95 100 -> Plus
arm_3L 1941316..1942237 96..1017 100 -> Plus
arm_3L 1942300..1942732 1018..1452 99   Plus

BO07533.pep Sequence

Translation from 16 to 1468

> BO07533.pep
MSAATAAAAASGIQSTAGAIPMRNEKGELSMQKVKVQRYISGKRPDYARA
DSSSEESDDDDFIDTRKRLERHKAERHKLELSRQGGSAEGEERAAGEGQE
EDDAEVDDPRLRRLRQRPVDMEDMERERRERHRHIHEPEIMESDSEDEEE
DEGAQGAIQRGTNKITLASESDTDAELSDTELENRRTKLRSRMLQQQREE
EVLQKEDEKQSESSESESSEYEEETESEEDNEPRLKPLFVRKRDRATIQE
KEREAQKQKQLEAEAKRAAKERRRATLRMVEESVKKDLEKTKPETNEACI
EDVCTDDENDEVEYEAWKLRELKRMKRDREERDNVEREKLDIDRMRNMTE
EERRQELRQNPKVVTNKATKGKYKFLQKYYHRGAFYLDEENDVLKRDFAQ
ATLEDHFDKTILPKVMQVKNFGRCGRTKYTHLVDQDTTKFDSPWYAESSS
NIKFHNEHAGGMRQQFDKPTGSKRKKMEASFLDH

BO07533.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Mfap1-PA 478 CG1017-PA 1..478 1..478 2449 100 Plus
CG2839-PA 826 CG2839-PA 419..748 23..378 260 25.1 Plus
CG2839-PA 826 CG2839-PA 280..570 44..356 250 24.8 Plus
CG2839-PA 826 CG2839-PA 266..574 23..359 248 23.7 Plus
CG2839-PA 826 CG2839-PA 268..558 66..360 231 26.3 Plus
CG2839-PA 826 CG2839-PA 331..639 43..382 229 24.9 Plus
CG2839-PA 826 CG2839-PA 290..675 26..382 226 23.6 Plus
CG2839-PA 826 CG2839-PA 466..750 28..299 220 25.2 Plus
rudhira-PE 2075 CG43154-PE 1226..1632 3..378 216 22.1 Plus
rudhira-PC 2075 CG43154-PC 1226..1632 3..378 216 22.1 Plus
Strn-Mlck-PT 7905 CG44162-PT 3776..4155 32..409 208 23.1 Plus
CG2839-PA 826 CG2839-PA 264..540 95..359 204 25.4 Plus
CG2839-PA 826 CG2839-PA 499..793 43..332 203 23.7 Plus
CG2839-PA 826 CG2839-PA 269..513 126..372 187 26 Plus
rudhira-PE 2075 CG43154-PE 1382..1657 51..340 185 23.2 Plus
rudhira-PC 2075 CG43154-PC 1382..1657 51..340 185 23.2 Plus
CG2839-PA 826 CG2839-PA 510..749 25..258 171 23.3 Plus