Clone Sequence Records
BO07533.3prime Sequence
963 bp (843 high quality bases) assembled on 2006-01-06
> BO07533.3prime
ATGGTCTAGAAAGCTTGCCTCCATCTTTTTTCGCTTCGAGCCGGTGGGCT
TGTCAAACTGCTGCCTCATGCCGCCGGCGTGTTCGTTGTGGAACTTGATG
TTGCTGGATGACTCGGCGTACCAGGGCGAGTCGAACTTGGTGGTGTCCTG
GTCCACTAAATGAGTGTACTTGGTGCGGCCGCAGCGGCCGAAGTTCTTCA
CCTGCATCACCTTGGGCAGAATGGTCTTATCGAAGTGATCCTCCAGCGTG
GCCTGGGCGAAGTCGCGCTTGAGGACGTCGTTCTCCTCATCCAGGTAGAA
GGCACCACGATGATAGTACTTCTGCAGGAACTTGTACTTGCCCTTGGTGG
CCTTGTTGGTGACCACCTTGGGGTTCTGGCGCAGCTCCTGGCGTCGCTCC
TCTTCGGTCATGTTGCGCATGCGATCAATGTCCAGCTTCTCGCGTTCGAC
GTTATCACGTTCCTCGCGATCCCGCTTCATTCGCTTGAGTTCACGCAGCT
TCCAGGCCTCGTATTCCACCTCGTCGTTTTCGTCGTCCGTGCACACGTCC
TCGATGCAGGCCTCATTGGTCTCCGGCTTGGTCTTCTCCAGATCTTTCTT
GACGCTCTCCTCGACCATTCGCAGGGTGGCTCTTCTGCGCTCCTTGGCTG
CCCGCTTGGCCTCCGCCTCCAGCTGCTTCTGCTTCTGAGCCTCTCGCTCC
TTCTCCTGGATGGTGGCACGATCTCTCTTTCGGACGAAGAGCGGCTTCAG
GCGGGGTTCGTTGTCCTCCTCGCTTTCGGTCTCCTCCTCGTACTCGGAGC
TTTCTGATTCGGACGATTCCGACTGTTTCTCATCCTCTTTCTGTAGAACC
TCCTCCTCGCGCTGCTGCTGCAGCATGCGGGATCTCAGCTTGGTGCGCCG
GTTCTCCAGCTCTGTGTCGCTGAGCTCCGCATCCGTGTCGGATTCGGATG
CCAGTGTGATCTT
BO07533.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1017-PA | 1437 | CG1017-RA | 490..1434 | 963..19 | 4725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:36:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mfap1-RA | 1682 | CG1017-RA | 598..1542 | 963..19 | 4725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1941726..1942237 | 963..452 | 2560 | 100 | Minus |
3L | 28110227 | 3L | 1942300..1942732 | 451..19 | 2165 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 23:36:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1057..1148 | 716..626 | 114 | 62.4 | Minus |
BO07533.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:29 Download gff for
BO07533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1017-PA | 490..1437 | 18..963 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:55 Download gff for
BO07533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1017-PA | 490..1437 | 18..963 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:41 Download gff for
BO07533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mfap1-RA | 598..1542 | 19..963 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:11 Download gff for
BO07533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mfap1-RA | 598..1542 | 19..963 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:11 Download gff for
BO07533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1941726..1942237 | 452..963 | 100 | -> | Minus |
3L | 1942300..1942732 | 19..451 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:41 Download gff for
BO07533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1941726..1942237 | 452..963 | 100 | -> | Minus |
arm_3L | 1942300..1942732 | 19..451 | 100 | | Minus |
BO07533.5prime Sequence
884 bp (831 high quality bases) assembled on 2006-01-06
> BO07533.5prime
GAAGTTATCAGTCGACATGAGTGCAGCCACCGCCGCCGCCGCCGCTTCTG
GGATCCAGAGCACAGCGGGCGCCATTCCCATGCGCAATGAGAAAGGTGAA
TTGTCCATGCAAAAGGTGAAGGTGCAGCGATACATATCCGGTAAGCGACC
CGACTACGCCCGTGCGGACTCCAGTTCGGAGGAGAGCGACGACGATGACT
TCATTGACACCAGGAAGCGCCTTGAGCGCCACAAGGCGGAACGGCATAAG
CTGGAGCTCTCCCGTCAAGGCGGCAGCGCGGAGGGCGAAGAGCGGGCGGC
GGGTGAGGGCCAGGAGGAGGACGATGCCGAGGTGGACGATCCACGCCTCC
GAAGATTGCGGCAGCGACCCGTAGACATGGAGGACATGGAACGTGAGCGG
AGGGAACGCCACCGACACATCCACGAACCGGAAATCATGGAGAGTGACAG
CGAAGACGAGGAGGAAGACGAGGGAGCACAGGGAGCGATTCAGCGGGGCA
CCAATAAGATCACACTGGCATCCGAATCCGACACGGATGCGGAGCTCAGC
GACACAGAGCTGGAGAACCGGCGCACCAAGCTGAGATCCCGCATGCTGCA
GCAGCAGCGCGAGGAGGAGGTTCTACAGAAAGAGGATGAGAAACAGTCGG
AATCGTCCGAATCAGAAAGCTCCGAGTACGAGGAGGAGACCGAAAGCGAG
GAGGACAACGAACCCCGCCTGAAGCCGCTCTTCGTCCGAAAGAGAGATCG
TGCCACCATCCAGGAGAAGGAGCGAGAGGCTCAGAAGCAGAAGCAGCTGG
AGGCGGAGGCCAAGCGGGCAGCCAAGGAGCGCAGAAGAGCCACCCTGCGA
ATGGTCGAGGAGAGCGTCAAGAAAGATCTGGAGA
BO07533.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1017-PA | 1437 | CG1017-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mfap1-RA | 1682 | CG1017-RA | 109..976 | 17..884 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:01:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1941314..1942104 | 94..884 | 3955 | 100 | Plus |
3L | 28110227 | 3L | 1941176..1941256 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 10:01:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1057..1148 | 753..843 | 114 | 62.4 | Plus |
BO07533.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:30 Download gff for
BO07533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1017-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:56 Download gff for
BO07533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1017-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:45:14 Download gff for
BO07533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mfap1-RA | 105..975 | 9..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:59:38 Download gff for
BO07533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mfap1-RA | 105..975 | 9..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:59:38 Download gff for
BO07533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1941172..1941254 | 9..95 | 95 | -> | Plus |
3L | 1941316..1942103 | 96..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:45:14 Download gff for
BO07533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1941172..1941254 | 9..95 | 95 | -> | Plus |
arm_3L | 1941316..1942103 | 96..883 | 100 | | Plus |
BO07533.complete Sequence
1468 bp (1468 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630827
> BO07533.complete
GAAGTTATCAGTCGACATGAGTGCAGCCACCGCCGCCGCCGCCGCTTCTG
GGATCCAGAGCACAGCGGGCGCCATTCCCATGCGCAATGAGAAAGGTGAA
TTGTCCATGCAAAAGGTGAAGGTGCAGCGATACATATCCGGTAAGCGACC
CGACTACGCCCGTGCGGACTCCAGTTCGGAGGAGAGCGACGACGATGACT
TCATTGACACCAGGAAGCGCCTTGAGCGCCACAAGGCGGAACGGCATAAG
CTGGAGCTCTCCCGTCAAGGCGGCAGCGCGGAGGGCGAAGAGCGGGCGGC
GGGTGAGGGCCAGGAGGAGGACGATGCCGAGGTGGACGATCCACGCCTCC
GAAGATTGCGGCAGCGACCCGTAGACATGGAGGACATGGAACGTGAGCGG
AGGGAACGCCACCGACACATCCACGAACCGGAAATCATGGAGAGTGACAG
CGAAGACGAGGAGGAAGACGAGGGAGCACAGGGAGCGATTCAGCGGGGCA
CCAATAAGATCACACTGGCATCCGAATCCGACACGGATGCGGAGCTCAGC
GACACAGAGCTGGAGAACCGGCGCACCAAGCTGAGATCCCGCATGCTGCA
GCAGCAGCGCGAGGAGGAGGTTCTACAGAAAGAGGATGAGAAACAGTCGG
AATCGTCCGAATCAGAAAGCTCCGAGTACGAGGAGGAGACCGAAAGCGAG
GAGGACAACGAACCCCGCCTGAAGCCGCTCTTCGTCCGAAAGAGAGATCG
TGCCACCATCCAGGAGAAGGAGCGAGAGGCTCAGAAGCAGAAGCAGCTGG
AGGCGGAGGCCAAGCGGGCAGCCAAGGAGCGCAGAAGAGCCACCCTGCGA
ATGGTCGAGGAGAGCGTCAAGAAAGATCTGGAGAAGACCAAGCCGGAGAC
CAATGAGGCCTGCATCGAGGACGTGTGCACGGACGACGAAAACGACGAGG
TGGAATACGAGGCCTGGAAGCTGCGTGAACTCAAGCGAATGAAGCGGGAT
CGCGAGGAACGTGATAACGTCGAACGCGAGAAGCTGGACATTGATCGCAT
GCGCAACATGACCGAAGAGGAGCGACGCCAGGAGCTGCGCCAGAACCCCA
AGGTGGTCACCAACAAGGCCACCAAGGGCAAGTACAAGTTCCTGCAGAAG
TACTATCATCGTGGTGCCTTCTACCTGGATGAGGAGAACGACGTCCTCAA
GCGCGACTTCGCCCAGGCCACGCTGGAGGATCACTTCGATAAGACCATTC
TGCCCAAGGTGATGCAGGTGAAGAACTTCGGCCGCTGCGGCCGCACCAAG
TACACTCATTTAGTGGACCAGGACACCACCAAGTTCGACTCGCCCTGGTA
CGCCGAGTCATCCAGCAACATCAAGTTCCACAACGAACACGCCGGCGGCA
TGAGGCAGCAGTTTGACAAGCCCACCGGCTCGAAGCGAAAAAAGATGGAG
GCAAGCTTTCTAGACCAT
BO07533.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mfap1-RA | 1437 | CG1017-PA | 1..1434 | 17..1450 | 7170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mfap1-RA | 1682 | CG1017-RA | 109..1542 | 17..1450 | 7170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1941314..1942237 | 94..1017 | 4620 | 100 | Plus |
3L | 28110227 | 3L | 1942300..1942732 | 1018..1450 | 2165 | 100 | Plus |
3L | 28110227 | 3L | 1941176..1941256 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1057..1148 | 753..843 | 114 | 62.4 | Plus |
BO07533.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:58 Download gff for
BO07533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1017-RA | 1..1437 | 17..1451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:52 Download gff for
BO07533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1017-RA | 111..1548 | 9..1450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:01 Download gff for
BO07533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mfap1-RA | 109..1542 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:58 Download gff for
BO07533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1017-RA | 111..1548 | 9..1450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:33 Download gff for
BO07533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mfap1-RA | 109..1542 | 17..1452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:33 Download gff for
BO07533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1941176..1941254 | 17..95 | 100 | -> | Plus |
3L | 1941316..1942237 | 96..1017 | 100 | -> | Plus |
3L | 1942300..1942732 | 1018..1452 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:01 Download gff for
BO07533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1941176..1941254 | 17..95 | 100 | -> | Plus |
arm_3L | 1941316..1942237 | 96..1017 | 100 | -> | Plus |
arm_3L | 1942300..1942732 | 1018..1452 | 99 | | Plus |
BO07533.pep Sequence
Translation from 16 to 1468
> BO07533.pep
MSAATAAAAASGIQSTAGAIPMRNEKGELSMQKVKVQRYISGKRPDYARA
DSSSEESDDDDFIDTRKRLERHKAERHKLELSRQGGSAEGEERAAGEGQE
EDDAEVDDPRLRRLRQRPVDMEDMERERRERHRHIHEPEIMESDSEDEEE
DEGAQGAIQRGTNKITLASESDTDAELSDTELENRRTKLRSRMLQQQREE
EVLQKEDEKQSESSESESSEYEEETESEEDNEPRLKPLFVRKRDRATIQE
KEREAQKQKQLEAEAKRAAKERRRATLRMVEESVKKDLEKTKPETNEACI
EDVCTDDENDEVEYEAWKLRELKRMKRDREERDNVEREKLDIDRMRNMTE
EERRQELRQNPKVVTNKATKGKYKFLQKYYHRGAFYLDEENDVLKRDFAQ
ATLEDHFDKTILPKVMQVKNFGRCGRTKYTHLVDQDTTKFDSPWYAESSS
NIKFHNEHAGGMRQQFDKPTGSKRKKMEASFLDH
BO07533.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mfap1-PA | 478 | CG1017-PA | 1..478 | 1..478 | 2449 | 100 | Plus |
CG2839-PA | 826 | CG2839-PA | 419..748 | 23..378 | 260 | 25.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 280..570 | 44..356 | 250 | 24.8 | Plus |
CG2839-PA | 826 | CG2839-PA | 266..574 | 23..359 | 248 | 23.7 | Plus |
CG2839-PA | 826 | CG2839-PA | 268..558 | 66..360 | 231 | 26.3 | Plus |
CG2839-PA | 826 | CG2839-PA | 331..639 | 43..382 | 229 | 24.9 | Plus |
CG2839-PA | 826 | CG2839-PA | 290..675 | 26..382 | 226 | 23.6 | Plus |
CG2839-PA | 826 | CG2839-PA | 466..750 | 28..299 | 220 | 25.2 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1226..1632 | 3..378 | 216 | 22.1 | Plus |
rudhira-PC | 2075 | CG43154-PC | 1226..1632 | 3..378 | 216 | 22.1 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3776..4155 | 32..409 | 208 | 23.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 264..540 | 95..359 | 204 | 25.4 | Plus |
CG2839-PA | 826 | CG2839-PA | 499..793 | 43..332 | 203 | 23.7 | Plus |
CG2839-PA | 826 | CG2839-PA | 269..513 | 126..372 | 187 | 26 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1382..1657 | 51..340 | 185 | 23.2 | Plus |
rudhira-PC | 2075 | CG43154-PC | 1382..1657 | 51..340 | 185 | 23.2 | Plus |
CG2839-PA | 826 | CG2839-PA | 510..749 | 25..258 | 171 | 23.3 | Plus |