Clone BO07534 Report

Search the DGRC for BO07534

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG4439-RA
Protein status:BO07534.pep: validated full length
Sequenced Size:1636

Clone Sequence Records

BO07534.3prime Sequence

914 bp (819 high quality bases) assembled on 2006-01-06

> BO07534.3prime
ATGGTCTAGAAAGCTTGCTTTGCAGGCCATCTGGTAGAGGAACTGGATGA
TCGATCGAGTCGGACGACCAGTCATGCAATCCTTGAGCAAATACGGAGGA
ACTCCGTGCTTAGCCAGCATTCCGGTGCCGTGGGTATCCAGGTGCACCCA
GTCGGAGCAGGGAACCAGTTCGTAAAGGATAGCAGCCGCCAAGCAGGAGG
ATGCGTGTCCCTCTCCCGTGCTGCATATATCGTAGGATGCACGGGGGGCC
ACTAATTTGCGGAAGTACCTCCATAGGGGCATGCGCCACAAACGATCGCC
GGTGAGAGCTCCGGCCTTTTGGAAATTCTTCCAGAGGAAAGAGTTATTGG
TCCACAGTCCGGTGGCCGAGGCTCCCAGTCCTTTGCGAATGCCGCTGGCC
ATCGAGCCCACTTCCACCACCAACTTGGGCTTGAAAGTCGATTGAGCGTA
GAGCAGGGGATCGGCCAGGAGGACAGTGCCGGCCAGTGAGATATCCTTGA
TGCGCATGGTCTTGCCGTTTAGTAGTGTGACCACATCGCCCGGCTTGGTG
GCCATTCCCGATGGCATATTTTCACACAGGGGTAATACGGCGGACACATT
AATAGGCAACGATAGTGCGGCTGCCGCTCGAATGGCGGCCACGCAGACTG
CAGCTCCGGAAACTGCTCCGCGATACTCGTCCATTCCCCTTTTCGGATGC
AGGCATAGGCCACCGCTGTTGAATGTCAGTCCCTTGCCGAGCATAAGAAT
GGGTCGCTCCTCCGGTGAGGTGCCGCAATAGCTAACCTCTAGGATAATGG
GTGGCTCGCACGAGCCCTTGGCCACCATGAGGAAGGAGTTGAGATTCTGA
GTCTCAATCCAATCCATTGAACGCACTTCGACTGGAACACCACAGGGACA
ACAGGCATCCACGG

BO07534.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4439-PA 1605 CG4439-RA 707..1602 914..19 4405 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap8-RA 2055 CG4439-RA 924..1819 914..19 4435 99.7 Minus
loopin-1-RC 2078 CG4750-RC 868..1286 914..496 430 73.5 Minus
loopin-1-RA 2022 CG4750-RA 934..1352 914..496 430 73.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16492102..16492997 914..19 4435 99.7 Minus
2R 25286936 2R 16535876..16536294 914..496 430 73.5 Minus
2R 25286936 2R 13597566..13597973 912..505 360 72.5 Minus
3L 28110227 3L 10467256..10467593 867..530 235 71.3 Minus
Blast to na_te.dros performed on 2015-02-12 00:05:47 has no hits.

BO07534.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:31 Download gff for BO07534.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4439-PA 707..1605 15..914 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:57 Download gff for BO07534.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4439-PA 707..1605 15..914 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:06 Download gff for BO07534.3prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap8-RA 924..1822 15..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:39 Download gff for BO07534.3prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap8-RA 924..1822 15..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:39 Download gff for BO07534.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16492102..16493000 15..914 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:06 Download gff for BO07534.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12379607..12380505 15..914 99   Minus

BO07534.5prime Sequence

913 bp (815 high quality bases) assembled on 2006-01-06

> BO07534.5prime
GAAGTTATCAGTCGACATGACTCGATCGCAGATGATCTCCAGCCTGCGCC
GTTCTACACTGGGATTATTCAGGTGCCACAAGGCGCTCATTTTTGCCAGA
ATTCCAGCTTTTCAGCAGGTGAGATGCAAGAGTGAGGATGGCAGCTGCAA
CACCTGCAACTTGCAGGGAGTAGTGGTTGGCCTGTATGCCAAGGATGGTG
ATAAGGGGCTCAAGTTGTCCCCAGGTGGCGAAAAGTTCGACGACCGTGTT
GGCGGCAAGATCACGGAACTAATCAAGGAATCTGGACTCAATGGGGAGCT
CGGAGTGGGTCGACTATATCAGAATATCGATAAGGAGTACTGGGCCGTGG
CGGTTGTGGGCCTGGGCAAGGAAGGAGCTGGCTTCAATGCCGAGGAAGTC
ATCGACGAGGGCATGGAGAACGTGAGGGTGTGCGCCGCGGTGGGTGCCCG
AGCACTTCAGCTGCAGGGCTGCACCACCTGCCATGTGGATGGCATGGAGT
ATCCGGAGCAGGCTGCCGAAGGCGCCGCCATGGCCGTGTGGCGTTACAAT
GTGAACAAGCGCAAGAAGAACCGCATTGCCATACCGAAACTGGAGCTGTA
CGGATCCACAGATCAGGATGCCTGGACAAGGGGGCTGTTCAAGGCCGAAT
CACAGAATTTGGCCCGTCGTTTGTCGGACACGCCCGCCAACCAGATGACG
CCATCCATTTTCGCCCAAGCCACCGTGGATGCCTTGTGTCCCTGTGGTGT
TTCAGTCGAAGTGCGTTCAATGGATTGGATTGAGACTCAGAATCTCAACT
CCTTCCTCATGGTGGCCAAGGGCTCGTGCGAGCCACCCATTATCCTAGAG
GTTAGCTATTGCGGCACCTCACCGGAGGAGCGACCCATTTCTATGCTCGG
CAAGGGACTGACA

BO07534.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4439-PA 1605 CG4439-RA 1..897 17..913 4435 99.7 Plus
CG4750-PA 1581 CG4750-RA 592..695 635..738 170 86.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap8-RA 2055 CG4439-RA 218..1114 17..913 4455 99.8 Plus
loopin-1-RC 2078 CG4750-RC 591..1057 446..912 715 77.4 Plus
loopin-1-RA 2022 CG4750-RA 657..1123 446..912 715 77.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16491495..16492292 116..913 3960 99.7 Plus
2R 25286936 2R 16535635..16536065 482..912 700 77.5 Plus
2R 25286936 2R 13597183..13597730 342..889 610 74.1 Plus
2R 25286936 2R 16491317..16491420 17..120 520 100 Plus
3L 28110227 3L 10466968..10467362 482..876 250 70.9 Plus
3L 28110227 3L 10491599..10492021 484..906 210 70 Plus
Blast to na_te.dros performed on 2015-02-13 01:50:06 has no hits.

BO07534.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:32 Download gff for BO07534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4439-PA 1..896 17..912 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:59 Download gff for BO07534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4439-PA 1..896 17..912 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:54 Download gff for BO07534.5prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap8-RA 218..1113 17..912 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:12:57 Download gff for BO07534.5prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap8-RA 218..1113 17..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:12:57 Download gff for BO07534.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16491317..16491418 17..118 100 -> Plus
2R 16491498..16492291 119..912 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:54 Download gff for BO07534.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12378822..12378923 17..118 100 -> Plus
arm_2R 12379003..12379796 119..912 99   Plus

BO07534.complete Sequence

1636 bp (1636 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630828

> BO07534.complete
GAAGTTATCAGTCGACATGACTCGATCGCAGATGATCTCCAGCCTGCGCC
GTTCTACACTGGGATTATTCAGGTGCCACAAGGCGCTCATTTTTGCCAGA
ATTCCAGCTTTTCAGCAGGTGAGATGCAAGAGTGAGGATGGCAGCTGCAA
CACCTGCAACTTGCAGGGAGTAGTGGTTGGCCTGTATGCCAAGGATGGTG
ATAAGGGGCTCAAGTTGTCCCCAGGTGGCGAAAAGTTCGACGACCGTGTT
GGCGGCAAGATCACGGAACTAATCAAGGAATCTGGACTCAATGGGGAGCT
CGGAGTGGGTCGACTATATCAGAATATCGATAAGGAGTACTGGGCCGTGG
CGGTTGTGGGCCTGGGCAAGGAAGGAGCTGGCTTCAATGCCGAGGAAGTC
ATCGACGAGGGCATGGAGAACGTGAGGGTGTGCGCCGCGGTGGGTGCCCG
AGCACTTCAGCTGCAGGGCTGCACCACCTGCCATGTGGATGGCATGGAGT
ATCCGGAGCAGGCTGCCGAAGGCGCCGCCATGGCCGTGTGGCGTTACAAT
GTGAACAAGCGCAAGAAGAACCGCATTGCCATACCGAAACTGGAGCTGTA
CGGATCCACAGATCAGGATGCCTGGACAAGGGGGCTGTTCAAGGCCGAAT
CACAGAATTTGGCCCGTCGTTTGTCGGACACGCCCGCCAACCAGATGACG
CCATCCATTTTCGCCCAAGCCACCGTGGATGCCTTGTGTCCCTGTGGTGT
TTCAGTCGAAGTGCGTTCAATGGATTGGATTGAGACTCAGAATCTCAACT
CCTTCCTCATGGTGGCCAAGGGCTCGTGCGAGCCACCCATTATCCTAGAG
GTTAGCTATTGCGGCACCTCACCGGAGGAGCGACCCATTCTTATGCTCGG
CAAGGGACTGACATTCAACAGCGGTGGCCTATGCCTGCATCCGAAAAGGG
GAATGGACGAGTATCGCGGAGCAGTTTCCGGAGCTGCAGTCTGCGTGGCC
GCCATTCGAGCGGCAGCCGCACTATCGTTGCCTATTAATGTGTCCGCCGT
ATTACCCCTGTGTGAAAATATGCCATCGGGAATGGCCACCAAGCCGGGCG
ATGTGGTCACACTACTAAACGGCAAGACCATGCGCATCAAGGATATCTCA
CTGGCCGGCACTGTCCTCCTGGCCGATCCCCTGCTCTACGCTCAATCGAC
TTTCAAGCCCAAGTTGGTGGTGGAAGTGGGCTCGATGGCCAGCGGCATTC
GCAAAGGACTGGGAGCCTCGGCCACCGGACTGTGGACCAATAACTCTTTC
CTCTGGAAGAATTTCCAAAAGGCCGGAGCTCTCACCGGCGATCGTTTGTG
GCGCATGCCCCTATGGAGGTACTTCCGCAAATTAGTGGCCCCCCGTGCAT
CCTACGATATATGCAGCACGGGAGAGGGACACGCATCCTCCTGCTTGGCG
GCTGCTATCCTTTACGAACTGGTTCCCTGCTCCGACTGGGTGCACCTGGA
TACCCACGGCACCGGAATGCTGGCTAAGCACGGAGTTCCTCCGTATTTGC
TCAAGGATTGCATGACTGGTCGTCCGACTCGATCGATCATCCAGTTCCTC
TACCAGATGGCCTGCAAAGCAAGCTTTCTAGACCAT

BO07534.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap8-RA 1605 CG4439-PA 1..1602 17..1618 8010 100 Plus
loopin-1-RC 1581 CG4750-PC 439..1098 482..1141 885 75.6 Plus
loopin-1-RA 1581 CG4750-PA 439..1098 482..1141 885 75.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap8-RA 2055 CG4439-RA 218..1819 17..1618 8010 100 Plus
loopin-1-RC 2078 CG4750-RC 627..1286 482..1141 885 75.6 Plus
loopin-1-RA 2022 CG4750-RA 693..1352 482..1141 885 75.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16491495..16492997 116..1618 7515 100 Plus
2R 25286936 2R 16535635..16536294 482..1141 885 75.6 Plus
2R 25286936 2R 13597183..13597973 342..1132 760 73.1 Plus
2R 25286936 2R 16491317..16491420 17..120 520 100 Plus
3L 28110227 3L 10466968..10467593 482..1107 295 69.8 Plus
3L 28110227 3L 10491599..10492034 484..919 215 70 Plus
Blast to na_te.dros performed on 2014-11-27 15:36:49 has no hits.

BO07534.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:59 Download gff for BO07534.complete
Subject Subject Range Query Range Percent Splice Strand
CG4439-RA 1..1605 17..1622 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:53 Download gff for BO07534.complete
Subject Subject Range Query Range Percent Splice Strand
CG4439-RA 176..1780 17..1622 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:31 Download gff for BO07534.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap8-RA 218..1819 17..1620 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:00 Download gff for BO07534.complete
Subject Subject Range Query Range Percent Splice Strand
CG4439-RA 176..1780 17..1622 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:06 Download gff for BO07534.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap8-RA 218..1819 17..1620 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:06 Download gff for BO07534.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16491317..16491418 17..118 100 -> Plus
2R 16491498..16492997 119..1620 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:31 Download gff for BO07534.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12378822..12378923 17..118 100 -> Plus
arm_2R 12379003..12380502 119..1620 99   Plus

BO07534.pep Sequence

Translation from 16 to 1636

> BO07534.pep
MTRSQMISSLRRSTLGLFRCHKALIFARIPAFQQVRCKSEDGSCNTCNLQ
GVVVGLYAKDGDKGLKLSPGGEKFDDRVGGKITELIKESGLNGELGVGRL
YQNIDKEYWAVAVVGLGKEGAGFNAEEVIDEGMENVRVCAAVGARALQLQ
GCTTCHVDGMEYPEQAAEGAAMAVWRYNVNKRKKNRIAIPKLELYGSTDQ
DAWTRGLFKAESQNLARRLSDTPANQMTPSIFAQATVDALCPCGVSVEVR
SMDWIETQNLNSFLMVAKGSCEPPIILEVSYCGTSPEERPILMLGKGLTF
NSGGLCLHPKRGMDEYRGAVSGAAVCVAAIRAAAALSLPINVSAVLPLCE
NMPSGMATKPGDVVTLLNGKTMRIKDISLAGTVLLADPLLYAQSTFKPKL
VVEVGSMASGIRKGLGASATGLWTNNSFLWKNFQKAGALTGDRLWRMPLW
RYFRKLVAPRASYDICSTGEGHASSCLAAAILYELVPCSDWVHLDTHGTG
MLAKHGVPPYLLKDCMTGRPTRSIIQFLYQMACKASFLDH

BO07534.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap8-PA 534 CG4439-PA 1..534 1..534 2801 100 Plus
S-Lap5-PA 549 CG18369-PA 41..548 30..536 1885 68.9 Plus
loopin-1-PC 526 CG4750-PC 41..524 50..533 1790 67.4 Plus
loopin-1-PA 526 CG4750-PA 41..524 50..533 1790 67.4 Plus
S-Lap3-PD 535 CG32063-PD 47..530 50..533 1742 63 Plus