Clone Sequence Records
BO07534.3prime Sequence
914 bp (819 high quality bases) assembled on 2006-01-06
> BO07534.3prime
ATGGTCTAGAAAGCTTGCTTTGCAGGCCATCTGGTAGAGGAACTGGATGA
TCGATCGAGTCGGACGACCAGTCATGCAATCCTTGAGCAAATACGGAGGA
ACTCCGTGCTTAGCCAGCATTCCGGTGCCGTGGGTATCCAGGTGCACCCA
GTCGGAGCAGGGAACCAGTTCGTAAAGGATAGCAGCCGCCAAGCAGGAGG
ATGCGTGTCCCTCTCCCGTGCTGCATATATCGTAGGATGCACGGGGGGCC
ACTAATTTGCGGAAGTACCTCCATAGGGGCATGCGCCACAAACGATCGCC
GGTGAGAGCTCCGGCCTTTTGGAAATTCTTCCAGAGGAAAGAGTTATTGG
TCCACAGTCCGGTGGCCGAGGCTCCCAGTCCTTTGCGAATGCCGCTGGCC
ATCGAGCCCACTTCCACCACCAACTTGGGCTTGAAAGTCGATTGAGCGTA
GAGCAGGGGATCGGCCAGGAGGACAGTGCCGGCCAGTGAGATATCCTTGA
TGCGCATGGTCTTGCCGTTTAGTAGTGTGACCACATCGCCCGGCTTGGTG
GCCATTCCCGATGGCATATTTTCACACAGGGGTAATACGGCGGACACATT
AATAGGCAACGATAGTGCGGCTGCCGCTCGAATGGCGGCCACGCAGACTG
CAGCTCCGGAAACTGCTCCGCGATACTCGTCCATTCCCCTTTTCGGATGC
AGGCATAGGCCACCGCTGTTGAATGTCAGTCCCTTGCCGAGCATAAGAAT
GGGTCGCTCCTCCGGTGAGGTGCCGCAATAGCTAACCTCTAGGATAATGG
GTGGCTCGCACGAGCCCTTGGCCACCATGAGGAAGGAGTTGAGATTCTGA
GTCTCAATCCAATCCATTGAACGCACTTCGACTGGAACACCACAGGGACA
ACAGGCATCCACGG
BO07534.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4439-PA | 1605 | CG4439-RA | 707..1602 | 914..19 | 4405 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:05:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap8-RA | 2055 | CG4439-RA | 924..1819 | 914..19 | 4435 | 99.7 | Minus |
loopin-1-RC | 2078 | CG4750-RC | 868..1286 | 914..496 | 430 | 73.5 | Minus |
loopin-1-RA | 2022 | CG4750-RA | 934..1352 | 914..496 | 430 | 73.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16492102..16492997 | 914..19 | 4435 | 99.7 | Minus |
2R | 25286936 | 2R | 16535876..16536294 | 914..496 | 430 | 73.5 | Minus |
2R | 25286936 | 2R | 13597566..13597973 | 912..505 | 360 | 72.5 | Minus |
3L | 28110227 | 3L | 10467256..10467593 | 867..530 | 235 | 71.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:05:47 has no hits.
BO07534.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:31 Download gff for
BO07534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4439-PA | 707..1605 | 15..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:57 Download gff for
BO07534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4439-PA | 707..1605 | 15..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:06 Download gff for
BO07534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap8-RA | 924..1822 | 15..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:39 Download gff for
BO07534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap8-RA | 924..1822 | 15..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:39 Download gff for
BO07534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16492102..16493000 | 15..914 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:06 Download gff for
BO07534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12379607..12380505 | 15..914 | 99 | | Minus |
BO07534.5prime Sequence
913 bp (815 high quality bases) assembled on 2006-01-06
> BO07534.5prime
GAAGTTATCAGTCGACATGACTCGATCGCAGATGATCTCCAGCCTGCGCC
GTTCTACACTGGGATTATTCAGGTGCCACAAGGCGCTCATTTTTGCCAGA
ATTCCAGCTTTTCAGCAGGTGAGATGCAAGAGTGAGGATGGCAGCTGCAA
CACCTGCAACTTGCAGGGAGTAGTGGTTGGCCTGTATGCCAAGGATGGTG
ATAAGGGGCTCAAGTTGTCCCCAGGTGGCGAAAAGTTCGACGACCGTGTT
GGCGGCAAGATCACGGAACTAATCAAGGAATCTGGACTCAATGGGGAGCT
CGGAGTGGGTCGACTATATCAGAATATCGATAAGGAGTACTGGGCCGTGG
CGGTTGTGGGCCTGGGCAAGGAAGGAGCTGGCTTCAATGCCGAGGAAGTC
ATCGACGAGGGCATGGAGAACGTGAGGGTGTGCGCCGCGGTGGGTGCCCG
AGCACTTCAGCTGCAGGGCTGCACCACCTGCCATGTGGATGGCATGGAGT
ATCCGGAGCAGGCTGCCGAAGGCGCCGCCATGGCCGTGTGGCGTTACAAT
GTGAACAAGCGCAAGAAGAACCGCATTGCCATACCGAAACTGGAGCTGTA
CGGATCCACAGATCAGGATGCCTGGACAAGGGGGCTGTTCAAGGCCGAAT
CACAGAATTTGGCCCGTCGTTTGTCGGACACGCCCGCCAACCAGATGACG
CCATCCATTTTCGCCCAAGCCACCGTGGATGCCTTGTGTCCCTGTGGTGT
TTCAGTCGAAGTGCGTTCAATGGATTGGATTGAGACTCAGAATCTCAACT
CCTTCCTCATGGTGGCCAAGGGCTCGTGCGAGCCACCCATTATCCTAGAG
GTTAGCTATTGCGGCACCTCACCGGAGGAGCGACCCATTTCTATGCTCGG
CAAGGGACTGACA
BO07534.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4439-PA | 1605 | CG4439-RA | 1..897 | 17..913 | 4435 | 99.7 | Plus |
CG4750-PA | 1581 | CG4750-RA | 592..695 | 635..738 | 170 | 86.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap8-RA | 2055 | CG4439-RA | 218..1114 | 17..913 | 4455 | 99.8 | Plus |
loopin-1-RC | 2078 | CG4750-RC | 591..1057 | 446..912 | 715 | 77.4 | Plus |
loopin-1-RA | 2022 | CG4750-RA | 657..1123 | 446..912 | 715 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16491495..16492292 | 116..913 | 3960 | 99.7 | Plus |
2R | 25286936 | 2R | 16535635..16536065 | 482..912 | 700 | 77.5 | Plus |
2R | 25286936 | 2R | 13597183..13597730 | 342..889 | 610 | 74.1 | Plus |
2R | 25286936 | 2R | 16491317..16491420 | 17..120 | 520 | 100 | Plus |
3L | 28110227 | 3L | 10466968..10467362 | 482..876 | 250 | 70.9 | Plus |
3L | 28110227 | 3L | 10491599..10492021 | 484..906 | 210 | 70 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:50:06 has no hits.
BO07534.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:32 Download gff for
BO07534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4439-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:04:59 Download gff for
BO07534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4439-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:54 Download gff for
BO07534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap8-RA | 218..1113 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:12:57 Download gff for
BO07534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap8-RA | 218..1113 | 17..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:12:57 Download gff for
BO07534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16491317..16491418 | 17..118 | 100 | -> | Plus |
2R | 16491498..16492291 | 119..912 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:54 Download gff for
BO07534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12378822..12378923 | 17..118 | 100 | -> | Plus |
arm_2R | 12379003..12379796 | 119..912 | 99 | | Plus |
BO07534.complete Sequence
1636 bp (1636 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630828
> BO07534.complete
GAAGTTATCAGTCGACATGACTCGATCGCAGATGATCTCCAGCCTGCGCC
GTTCTACACTGGGATTATTCAGGTGCCACAAGGCGCTCATTTTTGCCAGA
ATTCCAGCTTTTCAGCAGGTGAGATGCAAGAGTGAGGATGGCAGCTGCAA
CACCTGCAACTTGCAGGGAGTAGTGGTTGGCCTGTATGCCAAGGATGGTG
ATAAGGGGCTCAAGTTGTCCCCAGGTGGCGAAAAGTTCGACGACCGTGTT
GGCGGCAAGATCACGGAACTAATCAAGGAATCTGGACTCAATGGGGAGCT
CGGAGTGGGTCGACTATATCAGAATATCGATAAGGAGTACTGGGCCGTGG
CGGTTGTGGGCCTGGGCAAGGAAGGAGCTGGCTTCAATGCCGAGGAAGTC
ATCGACGAGGGCATGGAGAACGTGAGGGTGTGCGCCGCGGTGGGTGCCCG
AGCACTTCAGCTGCAGGGCTGCACCACCTGCCATGTGGATGGCATGGAGT
ATCCGGAGCAGGCTGCCGAAGGCGCCGCCATGGCCGTGTGGCGTTACAAT
GTGAACAAGCGCAAGAAGAACCGCATTGCCATACCGAAACTGGAGCTGTA
CGGATCCACAGATCAGGATGCCTGGACAAGGGGGCTGTTCAAGGCCGAAT
CACAGAATTTGGCCCGTCGTTTGTCGGACACGCCCGCCAACCAGATGACG
CCATCCATTTTCGCCCAAGCCACCGTGGATGCCTTGTGTCCCTGTGGTGT
TTCAGTCGAAGTGCGTTCAATGGATTGGATTGAGACTCAGAATCTCAACT
CCTTCCTCATGGTGGCCAAGGGCTCGTGCGAGCCACCCATTATCCTAGAG
GTTAGCTATTGCGGCACCTCACCGGAGGAGCGACCCATTCTTATGCTCGG
CAAGGGACTGACATTCAACAGCGGTGGCCTATGCCTGCATCCGAAAAGGG
GAATGGACGAGTATCGCGGAGCAGTTTCCGGAGCTGCAGTCTGCGTGGCC
GCCATTCGAGCGGCAGCCGCACTATCGTTGCCTATTAATGTGTCCGCCGT
ATTACCCCTGTGTGAAAATATGCCATCGGGAATGGCCACCAAGCCGGGCG
ATGTGGTCACACTACTAAACGGCAAGACCATGCGCATCAAGGATATCTCA
CTGGCCGGCACTGTCCTCCTGGCCGATCCCCTGCTCTACGCTCAATCGAC
TTTCAAGCCCAAGTTGGTGGTGGAAGTGGGCTCGATGGCCAGCGGCATTC
GCAAAGGACTGGGAGCCTCGGCCACCGGACTGTGGACCAATAACTCTTTC
CTCTGGAAGAATTTCCAAAAGGCCGGAGCTCTCACCGGCGATCGTTTGTG
GCGCATGCCCCTATGGAGGTACTTCCGCAAATTAGTGGCCCCCCGTGCAT
CCTACGATATATGCAGCACGGGAGAGGGACACGCATCCTCCTGCTTGGCG
GCTGCTATCCTTTACGAACTGGTTCCCTGCTCCGACTGGGTGCACCTGGA
TACCCACGGCACCGGAATGCTGGCTAAGCACGGAGTTCCTCCGTATTTGC
TCAAGGATTGCATGACTGGTCGTCCGACTCGATCGATCATCCAGTTCCTC
TACCAGATGGCCTGCAAAGCAAGCTTTCTAGACCAT
BO07534.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap8-RA | 1605 | CG4439-PA | 1..1602 | 17..1618 | 8010 | 100 | Plus |
loopin-1-RC | 1581 | CG4750-PC | 439..1098 | 482..1141 | 885 | 75.6 | Plus |
loopin-1-RA | 1581 | CG4750-PA | 439..1098 | 482..1141 | 885 | 75.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap8-RA | 2055 | CG4439-RA | 218..1819 | 17..1618 | 8010 | 100 | Plus |
loopin-1-RC | 2078 | CG4750-RC | 627..1286 | 482..1141 | 885 | 75.6 | Plus |
loopin-1-RA | 2022 | CG4750-RA | 693..1352 | 482..1141 | 885 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16491495..16492997 | 116..1618 | 7515 | 100 | Plus |
2R | 25286936 | 2R | 16535635..16536294 | 482..1141 | 885 | 75.6 | Plus |
2R | 25286936 | 2R | 13597183..13597973 | 342..1132 | 760 | 73.1 | Plus |
2R | 25286936 | 2R | 16491317..16491420 | 17..120 | 520 | 100 | Plus |
3L | 28110227 | 3L | 10466968..10467593 | 482..1107 | 295 | 69.8 | Plus |
3L | 28110227 | 3L | 10491599..10492034 | 484..919 | 215 | 70 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:36:49 has no hits.
BO07534.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:59 Download gff for
BO07534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4439-RA | 1..1605 | 17..1622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:53 Download gff for
BO07534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4439-RA | 176..1780 | 17..1622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:31 Download gff for
BO07534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap8-RA | 218..1819 | 17..1620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:00 Download gff for
BO07534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4439-RA | 176..1780 | 17..1622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:06 Download gff for
BO07534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap8-RA | 218..1819 | 17..1620 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:06 Download gff for
BO07534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16491317..16491418 | 17..118 | 100 | -> | Plus |
2R | 16491498..16492997 | 119..1620 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:31 Download gff for
BO07534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12378822..12378923 | 17..118 | 100 | -> | Plus |
arm_2R | 12379003..12380502 | 119..1620 | 99 | | Plus |
BO07534.pep Sequence
Translation from 16 to 1636
> BO07534.pep
MTRSQMISSLRRSTLGLFRCHKALIFARIPAFQQVRCKSEDGSCNTCNLQ
GVVVGLYAKDGDKGLKLSPGGEKFDDRVGGKITELIKESGLNGELGVGRL
YQNIDKEYWAVAVVGLGKEGAGFNAEEVIDEGMENVRVCAAVGARALQLQ
GCTTCHVDGMEYPEQAAEGAAMAVWRYNVNKRKKNRIAIPKLELYGSTDQ
DAWTRGLFKAESQNLARRLSDTPANQMTPSIFAQATVDALCPCGVSVEVR
SMDWIETQNLNSFLMVAKGSCEPPIILEVSYCGTSPEERPILMLGKGLTF
NSGGLCLHPKRGMDEYRGAVSGAAVCVAAIRAAAALSLPINVSAVLPLCE
NMPSGMATKPGDVVTLLNGKTMRIKDISLAGTVLLADPLLYAQSTFKPKL
VVEVGSMASGIRKGLGASATGLWTNNSFLWKNFQKAGALTGDRLWRMPLW
RYFRKLVAPRASYDICSTGEGHASSCLAAAILYELVPCSDWVHLDTHGTG
MLAKHGVPPYLLKDCMTGRPTRSIIQFLYQMACKASFLDH
BO07534.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap8-PA | 534 | CG4439-PA | 1..534 | 1..534 | 2801 | 100 | Plus |
S-Lap5-PA | 549 | CG18369-PA | 41..548 | 30..536 | 1885 | 68.9 | Plus |
loopin-1-PC | 526 | CG4750-PC | 41..524 | 50..533 | 1790 | 67.4 | Plus |
loopin-1-PA | 526 | CG4750-PA | 41..524 | 50..533 | 1790 | 67.4 | Plus |
S-Lap3-PD | 535 | CG32063-PD | 47..530 | 50..533 | 1742 | 63 | Plus |