Clone Sequence Records
BO07537.3prime Sequence
963 bp (812 high quality bases) assembled on 2006-01-06
> BO07537.3prime
ATGGTCTAGAAAGCTTGCCAGTCCACTGGTGTTGCTGGTCATCAGTATGA
ACGGAATAAGAGCATCCATCTGCATCTGCCCCACCAAGTTGGCGAAGAAC
AGCTCCTCCATGGCCTCTGCGTCCAGGCTGCTGAGCGGAAGAAGGCGAGC
CACCAGAACATTAAAGCGCTCCTCGCCGCCGCCGATGCCACCCTGCCTTC
TCAAACTTGACAGAGCGTAGAGTTGGACTCTGCGGACGTAGCCTCGCAAC
GACCGCTCCTTGCGCTGCTGCAAGAGCGTTGGATTGAAGAGCAAGATCAG
ACGCAGCAAGCCAAACTCCATATCAGTAACATCCAGTGACTGGAGCTCCT
GGACAAAGTCGTGCAGGGTCCTGGTGAGATTTGCCATCTTCGAGATCTTC
AACGGTTCGATCTTATCGATATCCGCTAGCTGGCGAGTGCTTTGAATAAA
CTGCCCGATAATGGTGGGCACCGAAAGCTGACCCTGACACTGCGCCAAAG
CTATAGCCATTAATGCTGGCCACACTCCTCTCAGGAGTTTCACCTGTGTA
TGGGCTTCCAATTGTTCGAAAACTGGAACCTTTCGAAGGGTATGGATGGT
GAGAAAAATGATTCGCGAGCCCGTCTCACACACATAATGAATATTTAAAT
ACGAGTGGACCAAAGTCGGCGGTTGCACATGAAAGGCACACTGCACATCG
GTGAGAAGATCCTGTTCAAAGACCGCCTCATTGATAGCAAAATCGCTTCC
ACCGCTTCGGTTCCCACCGCACTCAAAGTCTAGTTCCATGTGCTCCAGCT
CCGCGTCTACGGCATCCTCGGTGCCACTGTCCTCCGCCTCTGAATCGCAC
TCGGGCTTCACACTCAGATTACCATTTCGCTCCAGTTGGGTTTGGATGGG
CTGCAGGATCTGCAGTCCCTTGTGGATGACCCGCATGTCCAGCGAACTCT
GAATAAGCCCCAT
BO07537.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7199-PC | 1806 | Hr78-RC | 859..1803 | 963..19 | 4700 | 99.8 | Minus |
| CG7199-PA | 1800 | Hr78-RA | 853..1797 | 963..19 | 4700 | 99.8 | Minus |
| CG7199-PD | 1806 | Hr78-RD | 859..1803 | 963..19 | 4700 | 99.8 | Minus |
| CG7199-PB | 1806 | Hr78-RB | 859..1803 | 963..19 | 4700 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr78-RF | 2175 | CG7199-RF | 941..1885 | 963..19 | 4710 | 99.9 | Minus |
| Hr78-RE | 2182 | CG7199-RE | 948..1892 | 963..19 | 4710 | 99.9 | Minus |
| Hr78-RB | 2266 | CG7199-RB | 1081..2025 | 963..19 | 4710 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21494309..21495253 | 19..963 | 4710 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:36:30 has no hits.
BO07537.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:38 Download gff for
BO07537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-PB | 859..1806 | 18..963 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:07 Download gff for
BO07537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7199-PB | 859..1806 | 18..963 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:46 Download gff for
BO07537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RB | 1081..2030 | 13..963 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:19 Download gff for
BO07537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RB | 1081..2030 | 13..963 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:19 Download gff for
BO07537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21494304..21495253 | 13..963 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:46 Download gff for
BO07537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21487404..21488353 | 13..963 | 99 | | Plus |
BO07537.5prime Sequence
905 bp (834 high quality bases) assembled on 2006-01-06
> BO07537.5prime
GAAGTTATCAGTCGACATGGACGGCGTTAAGGTTGAGACGTTCATCAAAA
GCGAAGAAAACCGAGCGATGCCCTTGATCGGAGGAGGCAGTGCCTCAGGC
GGCACTCCTCTGCCAGGAGGCGGCGTGGGAATGGGAGCCGGAGCATCCGC
AACGTTGAGCGTGGAGCTGTGTTTGGTGTGCGGGGACCGCGCCTCCGGGC
GGCACTACGGAGCCATAAGCTGCGAAGGCTGCAAGGGATTCTTCAAGCGC
TCGATCCGGAAGCAGCTGGGCTACCAGTGTCGCGGGGCTATGAACTGCGA
GGTCACCAAGCACCACAGGAATCGGTGCCAGTTCTGTCGACTACAGAAGT
GCCTGGCCAGCGGCATGCGAACTGTGCAGCACGAGAGGAAACCGATTGTG
GACAGGAAGGAGGGGATCATCGCTGCTGCCGGTAGCTCATCCACTTCTGG
CGGCGGTAATGGCTCGTCCACCTACCTATCCGGCAAGTCCGGCTATCAGC
AGGGGCGTGGCAAGGGGCACAGTGTAAAGGCCGAATCCGCGGCCACGCCT
CCAGTGCACAGCGCGCCAGCAACGGCCTTCAATTTGAATGAGAATATATT
CCCGATGGGTTTGAATTTCGCAGAACTAACGCAGACATTGATGTTCGCTA
CCCAACAGCAGCAGCAACAACAGCAACAGCATCAACAGAGTGGTAGCTAT
TCGCCAGATATTCCGAAGGCAGATCCCGAGGATGACGAGGACGACTCAAT
GGACAACAGCAGCACGCTGTGCTTGCAGTTGCTCGCCAACAGCGCCAGCA
ACAACAACTCGCAGCACCTGAACTTTAATGCTGGGGAAGTACCCACCGCT
CTGCCTACCACCTCGACAATGGGGCTTATTCAGAGTTCGCTGGACATGCG
GGTCA
BO07537.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7199-PA | 1800 | Hr78-RA | 1..889 | 17..905 | 4445 | 100 | Plus |
| CG7199-PC | 1806 | Hr78-RC | 362..895 | 372..905 | 2670 | 100 | Plus |
| CG7199-PD | 1806 | Hr78-RD | 362..895 | 372..905 | 2670 | 100 | Plus |
| CG7199-PB | 1806 | Hr78-RB | 362..895 | 372..905 | 2670 | 100 | Plus |
| CG7199-PC | 1806 | Hr78-RC | 1..355 | 17..371 | 1775 | 100 | Plus |
| CG7199-PD | 1806 | Hr78-RD | 1..355 | 17..371 | 1775 | 100 | Plus |
| CG7199-PB | 1806 | Hr78-RB | 1..355 | 17..371 | 1775 | 100 | Plus |
| CG1133-PA | 1830 | opa-RA | 127..155 | 650..678 | 145 | 100 | Plus |
| CG3929-PA | 2217 | dx-RA | 1468..1496 | 653..681 | 145 | 100 | Plus |
| CG1864-PB | 3237 | Hr38-RB | 1333..1361 | 653..681 | 145 | 100 | Plus |
| CG32782-PC | 3765 | tlk-RC | 3640..3668 | 653..681 | 145 | 100 | Plus |
| CG32782-PD | 3765 | tlk-RD | 3640..3668 | 653..681 | 145 | 100 | Plus |
| CG3638-PD | 4215 | CG3638-RD | 4156..4183 | 653..680 | 140 | 100 | Plus |
| CG4798-PB | 1881 | l(2)k01209-RB | 181..212 | 653..684 | 135 | 96.8 | Plus |
| CG4798-PC | 1881 | l(2)k01209-RC | 181..212 | 653..684 | 135 | 96.8 | Plus |
| CG4798-PD | 1881 | l(2)k01209-RD | 181..212 | 653..684 | 135 | 96.8 | Plus |
| CG11987-PA | 1929 | tgo-RA | 1361..1387 | 651..677 | 135 | 100 | Plus |
| CG14938-PC | 2271 | crol-RC | 2080..2111 | 653..684 | 135 | 96.8 | Plus |
| CG14938-PD | 2637 | crol-RD | 2446..2477 | 653..684 | 135 | 96.8 | Plus |
| CG14938-PB | 2676 | crol-RB | 2485..2516 | 653..684 | 135 | 96.8 | Plus |
| CG14938-PA | 2889 | crol-RA | 2698..2729 | 653..684 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:02:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr78-RA | 2339 | CG7199-RA | 253..1141 | 17..905 | 4445 | 100 | Plus |
| Hr78-RF | 2175 | CG7199-RF | 83..977 | 17..905 | 4375 | 99.3 | Plus |
| Hr78-RE | 2182 | CG7199-RE | 90..984 | 17..905 | 4375 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21496427..21496743 | 371..55 | 1585 | 100 | Minus |
| 3L | 28110227 | 3L | 21495599..21495868 | 641..372 | 1350 | 100 | Minus |
| 3L | 28110227 | 3L | 21495217..21495480 | 905..642 | 1320 | 100 | Minus |
| 3L | 28110227 | 3L | 21496820..21496859 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 10:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2509 | 653..822 | 174 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6900 | 653..816 | 164 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6932 | 653..817 | 163 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2577 | 653..841 | 155 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2496..2658 | 653..818 | 154 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6914 | 653..818 | 154 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2484 | 652..815 | 150 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2398 | 653..687 | 148 | 91.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6861 | 653..687 | 148 | 91.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6841 | 653..699 | 147 | 81.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1598 | 653..697 | 144 | 80 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6592..6676 | 648..728 | 144 | 68.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8048..8132 | 648..728 | 144 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2341 | 645..687 | 143 | 81.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2665 | 654..687 | 143 | 91.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6765 | 653..687 | 139 | 88.6 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..568 | 653..687 | 139 | 88.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1112..1146 | 653..687 | 139 | 88.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2441 | 653..688 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2825 | 653..688 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6814 | 653..688 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6868..6901 | 652..685 | 134 | 88.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6757 | 652..688 | 131 | 83.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2386 | 653..687 | 130 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6840 | 653..687 | 130 | 85.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1099 | 646..688 | 130 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2533 | 653..822 | 129 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2820..2982 | 653..818 | 129 | 54.8 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 974..1015 | 652..693 | 129 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2850 | 653..697 | 128 | 78.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2802..2837 | 653..688 | 126 | 83.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1121..1154 | 653..686 | 125 | 85.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2488 | 653..687 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6819 | 653..687 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1158 | 653..687 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1144 | 654..688 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1113 | 653..687 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6750 | 655..687 | 120 | 84.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1133..1165 | 653..685 | 120 | 84.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3323 | 653..685 | 120 | 84.8 | Plus |
| BS | 5142 | BS BS 5142bp | 2090..2122 | 653..685 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1549 | 646..687 | 119 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6568 | 653..688 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6877 | 653..688 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6878..6913 | 653..688 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6883 | 653..688 | 116 | 82.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1567 | 653..687 | 112 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2404 | 653..687 | 112 | 80 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7422..7463 | 653..694 | 111 | 73.8 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7951..7988 | 646..683 | 109 | 76.3 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9395..9432 | 646..683 | 109 | 76.3 | Plus |
BO07537.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:38 Download gff for
BO07537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:08 Download gff for
BO07537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7199-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:45:18 Download gff for
BO07537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 248..1140 | 13..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:59:51 Download gff for
BO07537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 248..1140 | 13..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:59:51 Download gff for
BO07537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21495218..21495480 | 642..904 | 100 | <- | Minus |
| 3L | 21495599..21495868 | 372..641 | 100 | <- | Minus |
| 3L | 21496427..21496741 | 57..371 | 100 | <- | Minus |
| 3L | 21496820..21496864 | 13..56 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:45:18 Download gff for
BO07537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21488318..21488580 | 642..904 | 100 | <- | Minus |
| arm_3L | 21488699..21488968 | 372..641 | 100 | <- | Minus |
| arm_3L | 21489527..21489841 | 57..371 | 100 | <- | Minus |
| arm_3L | 21489920..21489964 | 13..56 | 97 | | Minus |
BO07537.complete Sequence
1831 bp assembled on 2007-03-23
GenBank Submission: FJ630830
> BO07537.complete
GAAGTTATCAGTCGACATGGACGGCGTTAAGGTTGAGACGTTCATCAAAA
GCGAAGAAAACCGAGCGATGCCCTTGATCGGAGGAGGCAGTGCCTCAGGC
GGCACTCCTCTGCCAGGAGGCGGCGTGGGAATGGGAGCCGGAGCATCCGC
AACGTTGAGCGTGGAGCTGTGTTTGGTGTGCGGGGACCGCGCCTCCGGGC
GGCACTACGGAGCCATAAGCTGCGAAGGCTGCAAGGGATTCTTCAAGCGC
TCGATCCGGAAGCAGCTGGGCTACCAGTGTCGCGGGGCTATGAACTGCGA
GGTCACCAAGCACCACAGGAATCGGTGCCAGTTCTGTCGACTACAGAAGT
GCCTGGCCAGCGGCATGCGAACTGTGCAGCACGAGAGGAAACCGATTGTG
GACAGGAAGGAGGGGATCATCGCTGCTGCCGGTAGCTCATCCACTTCTGG
CGGCGGTAATGGCTCGTCCACCTACCTATCCGGCAAGTCCGGCTATCAGC
AGGGGCGTGGCAAGGGGCACAGTGTAAAGGCCGAATCCGCGGCCACGCCT
CCAGTGCACAGCGCGCCAGCAACGGCCTTCAATTTGAATGAGAATATATT
CCCGATGGGTTTGAATTTCGCAGAACTAACGCAGACATTGATGTTCGCTA
CCCAACAGCAGCAGCAACAACAGCAACAGCATCAACAGAGTGGTAGCTAT
TCGCCAGATATTCCGAAGGCAGATCCCGAGGATGACGAGGACGACTCAAT
GGACAACAGCAGCACGCTGTGCTTGCAGTTGCTCGCCAACAGCGCCAGCA
ACAACAACTCGCAGCACCTGAACTTTAATGCTGGGGAAGTACCCACCGCT
CTGCCTACCACCTCGACAATGGGGCTTATTCAGAGTTCGCTGGACATGCG
GGTCATCCACAAGGGACTGCAGATCCTGCAGCCCATCCAAAACCAACTGG
AGCGAAATGGTAATCTGAGTGTGAAGCCCGAGTGCGATTCAGAGGCGGAG
GACAGTGGCACCGAGGATGCCGTAGACGCGGAGCTGGAGCACATGGAACT
AGACTTTGAGTGCGGTGGGAACCGAAGCGGTGGAAGCGATTTTGCTATCA
ATGAGGCGGTCTTTGAACAGGATCTTCTCACCGATGTGCAGTGTGCCTTT
CATGTGCAACCGCCGACTTTGGTCCACTCGTATTTAAATATTCATTATGT
GTGTGAGACGGGCTCGCGAATCATTTTTCTCACCATCCATACCCTTCGAA
AGGTTCCAGTTTTCGAACAATTGGAAGCCCATACACAGGTGAAACTCCTG
AGAGGAGTGTGGCCAGCATTAATGGCTATAGCTTTGGCGCAGTGTCAGGG
TCAGCTTTCGGTGCCCACCATTATCGGGCAGTTTATTCAAAGCACTCGCC
AGCTAGCGGATATCGATAAGATCGAACCGTTGAAGATCTCGAAGATGGCA
AATCTCACCAGGACCCTGCACGACTTTGTCCAGGAGCTCCAGTCACTGGA
TGTTACTGATATGGAGTTTGGCTTGCTGCGTCTGATCTTGCTCTTCAATC
CAACGCTCTTGCAGCAGCGCAAGGAGCGGTCGTTGCGAGGCTACGTCCGC
AGAGTCCAACTCTACGCTCTGTCAAGTTTGAGAAGGCAGGGTGGCATCGG
CGGCGGCGAGGAGCGCTTTAATGTTCTGGTGGCTCGCCTTCTTCCGCTCA
GCAGCCTGGACGCAGAGGCCATGGAGGAGCTGTTCTTCGCCAACTTGGTG
GGGCAGATGCAGATGGATGCTCTTATTCCGTTCATACTGATGACCAGCAA
CACCAGTGGACTGGCAAGCTTTCTAGACCAT
BO07537.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr78-RA | 1800 | CG7199-PA | 1..1797 | 17..1813 | 8985 | 100 | Plus |
| Hr78-RF | 1806 | CG7199-PF | 1..1803 | 17..1813 | 8890 | 99.7 | Plus |
| Hr78-RE | 1806 | CG7199-PE | 1..1803 | 17..1813 | 8890 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr78-RA | 2339 | CG7199-RA | 253..2049 | 17..1813 | 8985 | 100 | Plus |
| Hr78-RF | 2175 | CG7199-RF | 83..1885 | 17..1813 | 8890 | 99.7 | Plus |
| Hr78-RE | 2182 | CG7199-RE | 90..1892 | 17..1813 | 8890 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21494309..21495480 | 1813..642 | 5860 | 100 | Minus |
| 3L | 28110227 | 3L | 21496427..21496743 | 371..55 | 1585 | 100 | Minus |
| 3L | 28110227 | 3L | 21495599..21495868 | 641..372 | 1350 | 100 | Minus |
| 3L | 28110227 | 3L | 21496820..21496859 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2509 | 653..822 | 174 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6900 | 653..816 | 164 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6932 | 653..817 | 163 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2577 | 653..841 | 155 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2496..2658 | 653..818 | 154 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6914 | 653..818 | 154 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2484 | 652..815 | 150 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2398 | 653..687 | 148 | 91.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6861 | 653..687 | 148 | 91.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6841 | 653..699 | 147 | 81.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1598 | 653..697 | 144 | 80 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6592..6676 | 648..728 | 144 | 68.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8048..8132 | 648..728 | 144 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2341 | 645..687 | 143 | 81.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2665 | 654..687 | 143 | 91.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6765 | 653..687 | 139 | 88.6 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..568 | 653..687 | 139 | 88.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1112..1146 | 653..687 | 139 | 88.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2441 | 653..688 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2825 | 653..688 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6814 | 653..688 | 135 | 86.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6868..6901 | 652..685 | 134 | 88.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6757 | 652..688 | 131 | 83.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2386 | 653..687 | 130 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6840 | 653..687 | 130 | 85.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1099 | 646..688 | 130 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2533 | 653..822 | 129 | 60.2 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 974..1015 | 652..693 | 129 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2850 | 653..697 | 128 | 78.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2802..2837 | 653..688 | 126 | 83.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1121..1154 | 653..686 | 125 | 85.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2488 | 653..687 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6819 | 653..687 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1113 | 653..687 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1144 | 654..688 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1158 | 653..687 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6750 | 655..687 | 120 | 84.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1133..1165 | 653..685 | 120 | 84.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3323 | 653..685 | 120 | 84.8 | Plus |
| BS | 5142 | BS BS 5142bp | 2090..2122 | 653..685 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1549 | 646..687 | 119 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6568 | 653..688 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6877 | 653..688 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6878..6913 | 653..688 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6883 | 653..688 | 116 | 82.1 | Plus |
BO07537.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:27 Download gff for
BO07537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 1..1800 | 17..1814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:41 Download gff for
BO07537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 217..2023 | 13..1819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:15 Download gff for
BO07537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 253..2049 | 17..1815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:27 Download gff for
BO07537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 217..2023 | 13..1819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:10 Download gff for
BO07537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr78-RA | 253..2049 | 17..1815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:10 Download gff for
BO07537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21494307..21495480 | 642..1815 | 99 | <- | Minus |
| 3L | 21495599..21495868 | 372..641 | 100 | <- | Minus |
| 3L | 21496427..21496741 | 57..371 | 100 | <- | Minus |
| 3L | 21496820..21496859 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:15 Download gff for
BO07537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21487407..21488580 | 642..1815 | 99 | <- | Minus |
| arm_3L | 21488699..21488968 | 372..641 | 100 | <- | Minus |
| arm_3L | 21489527..21489841 | 57..371 | 100 | <- | Minus |
| arm_3L | 21489920..21489959 | 17..56 | 100 | | Minus |
BO07537.pep Sequence
Translation from 16 to 1831
> BO07537.pep
MDGVKVETFIKSEENRAMPLIGGGSASGGTPLPGGGVGMGAGASATLSVE
LCLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGAMNCEVTKHH
RNRCQFCRLQKCLASGMRTVQHERKPIVDRKEGIIAAAGSSSTSGGGNGS
STYLSGKSGYQQGRGKGHSVKAESAATPPVHSAPATAFNLNENIFPMGLN
FAELTQTLMFATQQQQQQQQQHQQSGSYSPDIPKADPEDDEDDSMDNSST
LCLQLLANSASNNNSQHLNFNAGEVPTALPTTSTMGLIQSSLDMRVIHKG
LQILQPIQNQLERNGNLSVKPECDSEAEDSGTEDAVDAELEHMELDFECG
GNRSGGSDFAINEAVFEQDLLTDVQCAFHVQPPTLVHSYLNIHYVCETGS
RIIFLTIHTLRKVPVFEQLEAHTQVKLLRGVWPALMAIALAQCQGQLSVP
TIIGQFIQSTRQLADIDKIEPLKISKMANLTRTLHDFVQELQSLDVTDME
FGLLRLILLFNPTLLQQRKERSLRGYVRRVQLYALSSLRRQGGIGGGEER
FNVLVARLLPLSSLDAEAMEELFFANLVGQMQMDALIPFILMTSNTSGLA
SFLDH
BO07537.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr78-PA | 599 | CG7199-PA | 1..599 | 1..599 | 3085 | 100 | Plus |
| Hr78-PF | 601 | CG7199-PF | 1..601 | 1..599 | 3068 | 99.5 | Plus |
| Hr78-PE | 601 | CG7199-PE | 1..601 | 1..599 | 3068 | 99.5 | Plus |
| Hr78-PB | 601 | CG7199-PB | 1..601 | 1..599 | 3068 | 99.5 | Plus |
| Hr78-PD | 601 | CG7199-PD | 1..601 | 1..599 | 3068 | 99.5 | Plus |
