Clone BO07538 Report

Search the DGRC for BO07538

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCyp9b2-RA
Protein status:BO07538.pep: validated full length
Sequenced Size:1549

Clone Sequence Records

BO07538.3prime Sequence

874 bp (837 high quality bases) assembled on 2006-01-06

> BO07538.3prime
ATGGTCTAGAAAGCTTGCTTTTCGCGGCACCAAGTGCATCCAGAATCCGG
ACCTAGGCGTAAAATTGAATCCACTCGCTGATCCCCACAGATCCTTGATG
GTCCTTGGGGAGGCCTCGATTTTGTAATGCAGCAGTAGGTTGAAGAGCAT
ACCCTTGACCTGCATCAAGGCATATCGATTTCCTATGCAATTCCTAGGTC
CCACGCCGAATGGCAAGTAGGTGTAGGGCACCATGTCACCCTTTCGCTCT
TCGCTAAATCGATCCGGGTCAAACTTTCTGGGTTCCGGGAAGTAGCGGTC
ATCCAAGTGCAACCCGGAAATGGGAATGTTGATTCGGTCGCCTACCTTGA
AGTCGAACAGCTTGGTGCCATCATCATCCGTGAGCGTGTAGTCCTTGGAG
CACAGGCGATCGGTGGCGGCGGCTAGAGTCCACTTTCGAAGGGACTCGGA
GATGACCATGTCCATGTAGGTCATCTTCTGCACGGCGTCGTAAGTGAGTG
GTGCACCGTTCAGAGCTTTCTTGGTCTCGACTATCTCCTCGTATAAACGC
TCCTGGACGTCGGGATTGTAAAGCAGTTCGTAGGTTGTGGTGCAGATCAG
ATTGGAGTTGTTTTCGAAGGCGGCGAAGAAGAAAATGAAGCACTGGGCCA
CGATCTCATCGTCCGTCCATTTATCCTCCGACTCATTCTTGGCCTCCATC
AGGAGCTGGATCATGTCGGGCCTGGTGATATTGTGCTTCTCGCGGTACTG
CATGGCTTCCACCACCAAGCGAGCAAAGTAATCAACCTTGGCGGAGTCGA
AAATAGTAAGCTTCAAAAGACTGAAAAGCTTTGGCACCAAGGTGGACAGC
ATGAACTTGAAGAACTGAAGTCCT

BO07538.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4486-PA 1518 Cyp9b2-RA 660..1515 874..19 4280 100 Minus
CG4485-PA 1518 Cyp9b1-RA 736..992 798..542 685 90.6 Minus
CG4485-PA 1518 Cyp9b1-RA 1027..1106 507..428 325 96.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9b2-RA 1667 CG4486-RA 710..1565 874..19 4280 100 Minus
Cyp9b1-RA 1752 CG4485-RA 695..1546 870..19 1935 82.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7130602..7131239 182..819 3190 100 Plus
2R 25286936 2R 7128318..7128939 197..818 1595 83.8 Plus
2R 25286936 2R 7130379..7130545 19..185 835 100 Plus
2R 25286936 2R 7128044..7128209 19..184 350 80.7 Plus
2R 25286936 2R 7131312..7131366 820..874 275 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:15:07 has no hits.

BO07538.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:40 Download gff for BO07538.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4486-PA 660..1518 15..874 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:09 Download gff for BO07538.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4486-PA 660..1518 15..874 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:39 Download gff for BO07538.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 710..1578 6..874 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:43 Download gff for BO07538.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 710..1578 6..874 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:43 Download gff for BO07538.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7130366..7130542 6..182 97 <- Plus
2R 7130603..7131239 183..819 100 <- Plus
2R 7131312..7131366 820..874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:39 Download gff for BO07538.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3017871..3018047 6..182 97 <- Plus
arm_2R 3018108..3018744 183..819 100 <- Plus
arm_2R 3018817..3018871 820..874 100   Plus

BO07538.5prime Sequence

918 bp (781 high quality bases) assembled on 2006-01-06

> BO07538.5prime
GAAGTTATCAGTCGACATGGCACTCATCGAAATTTGTCTGGCCCTTGTGG
TCATCGGTTATCTCATCTACAAATGGAGCACGGCCACCTTCAAAACCTTT
GAGGAAAGGAAGCTCTACTTCGAAAAGCCATATCCCTTTGTGGGTAATAT
GGCTGCAGCGGCCTTGCAGAAGTCGTCCTTCCAGAGACAACTCACCGAGT
TCTACGAACGCACTCGTCAACACAAACTGGTGGGCTTCTTCAATATGCGC
ACACCTATGATCACGCTAAACGACCCGGAGCTGATCAAAAAGGTCTGCGT
AAAGGACTTTGACCACTTCCCCAACCACCAGCCCTTCATCACCTCCAACG
ATCGCCTGTTCAACGACATGCTCAGCGTGATGAGGGACCAGCGGTGGAAG
CACATGAGAAACACCCTCACTCCGGTCTTCACGGCGGCCAAAATGCGCAA
CATGTTCACCCTGATGAACGAGAGCTTCGCGGAGTGCCTGCAGCACCTGG
ACAGCTCTTCGAAAACGCTTCCCGGCAGAAAGGGCTTTGAGGTGGACATG
AAGGTGATGTGCAACAAGCTCTCCAACGACATCATCGCCACTACCGCATT
CGGGCTAAAGGTTAACTCGTACGACAACCCGAAAAATGAGTTCTACGAGA
TCGGGCAGTCGCTGGTTTTCTCCCGAGGACTTCAGTTCTTCAAGTTCATG
CTGTCCACCTTGGTGCCAAAGCTTTTCAGTCTTTTGAAGCTTACTATTTT
CGACTCCGCCAAGGTTGATTACTTTGCTCGCTTGGTGGTGGAAGCCATGC
AGTACCGCGAGAAGCACAATATCACCAGGCCCGACATGATCCAGCTCCTG
ATGGAGGCCAAGAATGAGTCGGAGGATAAATGGACGGACGATGAGATCGT
GGCCCAGTGCTTCATTTT

BO07538.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4486-PA 1518 Cyp9b2-RA 1..902 17..918 4510 100 Plus
CG4485-PA 1518 Cyp9b1-RA 736..902 752..918 435 90.4 Plus
CG4485-PA 1518 Cyp9b1-RA 406..464 422..480 220 94.9 Plus
CG4485-PA 1518 Cyp9b1-RA 251..315 267..331 150 89.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9b2-RA 1667 CG4486-RA 51..952 17..918 4510 100 Plus
Cyp9b1-RA 1752 CG4485-RA 131..933 116..918 1525 80.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7131312..7131819 730..223 2540 100 Minus
2R 25286936 2R 7131884..7132089 222..17 1030 100 Minus
2R 25286936 2R 7131052..7131239 918..731 940 100 Minus
2R 25286936 2R 7129029..7129510 704..223 745 77 Minus
2R 25286936 2R 7128753..7128939 918..732 635 89.3 Minus
Blast to na_te.dros performed 2015-02-12 23:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
Doc4-element 2791 Doc4-element DOC4 2791bp 663..775 170..291 112 59 Plus

BO07538.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:41 Download gff for BO07538.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4486-PA 1..902 17..918 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:10 Download gff for BO07538.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4486-PA 1..902 17..918 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:54 Download gff for BO07538.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 46..952 9..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:33 Download gff for BO07538.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 46..952 9..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:33 Download gff for BO07538.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7131052..7131239 731..918 100 <- Minus
2R 7131312..7131819 223..730 100 <- Minus
2R 7131884..7132094 9..222 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:54 Download gff for BO07538.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3018557..3018744 731..918 100 <- Minus
arm_2R 3018817..3019324 223..730 100 <- Minus
arm_2R 3019389..3019599 9..222 98   Minus

BO07538.complete Sequence

1549 bp (1549 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630831

> BO07538.complete
GAAGTTATCAGTCGACATGGCACTCATCGAAATTTGTCTGGCCCTTGTGG
TCATCGGTTATCTCATCTACAAATGGAGCACGGCCACCTTCAAAACCTTT
GAGGAAAGGAAGCTCTACTTCGAAAAGCCATATCCCTTTGTGGGTAATAT
GGCTGCAGCGGCCTTGCAGAAGTCGTCCTTCCAGAGACAACTCACCGAGT
TCTACGAACGCACTCGTCAACACAAACTGGTGGGCTTCTTCAATATGCGC
ACACCTATGATCACGCTAAACGACCCGGAGCTGATCAAAAAGGTCTGCGT
AAAGGACTTTGACCACTTCCCCAACCACCAGCCCTTCATCACCTCCAACG
ATCGCCTGTTCAACGACATGCTCAGCGTGATGAGGGACCAGCGGTGGAAG
CACATGAGAAACACCCTCACTCCGGTCTTCACGGCGGCCAAAATGCGCAA
CATGTTCACCCTGATGAACGAGAGCTTCGCGGAGTGCCTGCAGCACCTGG
ACAGCTCTTCGAAAACGCTTCCCGGCAGAAAGGGCTTTGAGGTGGACATG
AAGGTGATGTGCAACAAGCTCTCCAACGACATCATCGCCACTACCGCATT
CGGGCTAAAGGTTAACTCGTACGACAACCCGAAAAATGAGTTCTACGAGA
TCGGGCAGTCGCTGGTTTTCTCCCGAGGACTTCAGTTCTTCAAGTTCATG
CTGTCCACCTTGGTGCCAAAGCTTTTCAGTCTTTTGAAGCTTACTATTTT
CGACTCCGCCAAGGTTGATTACTTTGCTCGCTTGGTGGTGGAAGCCATGC
AGTACCGCGAGAAGCACAATATCACCAGGCCCGACATGATCCAGCTCCTG
ATGGAGGCCAAGAATGAGTCGGAGGATAAATGGACGGACGATGAGATCGT
GGCCCAGTGCTTCATTTTCTTCTTCGCCGCCTTCGAAAACAACTCCAATC
TGATCTGCACCACAACCTACGAACTGCTTTACAATCCCGACGTCCAGGAG
CGTTTATACGAGGAGATAGTCGAGACCAAGAAAGCTCTGAACGGTGCACC
ACTCACTTACGACGCCGTGCAGAAGATGACCTACATGGACATGGTCATCT
CCGAGTCCCTTCGAAAGTGGACTCTAGCCGCCGCCACCGATCGCCTGTGC
TCCAAGGACTACACGCTCACGGATGATGATGGCACCAAGCTGTTCGACTT
CAAGGTAGGCGACCGAATCAACATTCCCATTTCCGGGTTGCACTTGGATG
ACCGCTACTTCCCGGAACCCAGAAAGTTTGACCCGGATCGATTTAGCGAA
GAGCGAAAGGGTGACATGGTGCCCTACACCTACTTGCCATTCGGCGTGGG
ACCTAGGAATTGCATAGGAAATCGATATGCCTTGATGCAGGTCAAGGGTA
TGCTCTTCAACCTACTGCTGCATTACAAAATCGAGGCCTCCCCAAGGACC
ATCAAGGATCTGTGGGGATCAGCGAGTGGATTCAATTTTACGCCTAGGTC
CGGATTCTGGATGCACTTGGTGCCGCGAAAAGCAAGCTTTCTAGACCAT

BO07538.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9b2-RA 1518 CG4486-PA 1..1515 17..1531 7575 100 Plus
Cyp9b1-RA 1518 CG4485-PA 100..1515 116..1531 2775 79.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9b2-RA 1667 CG4486-RA 51..1565 17..1531 7575 100 Plus
Cyp9b1-RA 1752 CG4485-RA 131..1546 116..1531 2775 79.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7130602..7131239 1368..731 3190 100 Minus
2R 25286936 2R 7131312..7131819 730..223 2540 100 Minus
2R 25286936 2R 7128318..7128939 1353..732 1595 83.8 Minus
2R 25286936 2R 7131884..7132089 222..17 1030 100 Minus
2R 25286936 2R 7130379..7130545 1531..1365 835 100 Minus
2R 25286936 2R 7129029..7129510 704..223 745 77 Minus
2R 25286936 2R 7128044..7128209 1531..1366 350 80.7 Minus
Blast to na_te.dros performed on 2014-11-27 20:58:24 has no hits.

BO07538.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:21 Download gff for BO07538.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 1..1518 17..1535 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:05 Download gff for BO07538.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 42..1574 9..1544 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:48 Download gff for BO07538.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 51..1561 17..1527 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:21 Download gff for BO07538.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 42..1574 9..1544 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:06 Download gff for BO07538.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9b2-RA 51..1561 17..1527 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:06 Download gff for BO07538.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7131884..7132089 17..222 100   Minus
2R 7130383..7130542 1368..1527 100 <- Minus
2R 7130603..7131239 731..1367 100 <- Minus
2R 7131312..7131819 223..730 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:48 Download gff for BO07538.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3017888..3018047 1368..1527 100 <- Minus
arm_2R 3018108..3018744 731..1367 100 <- Minus
arm_2R 3018817..3019324 223..730 100 <- Minus
arm_2R 3019389..3019594 17..222 100   Minus

BO07538.pep Sequence

Translation from 16 to 1549

> BO07538.pep
MALIEICLALVVIGYLIYKWSTATFKTFEERKLYFEKPYPFVGNMAAAAL
QKSSFQRQLTEFYERTRQHKLVGFFNMRTPMITLNDPELIKKVCVKDFDH
FPNHQPFITSNDRLFNDMLSVMRDQRWKHMRNTLTPVFTAAKMRNMFTLM
NESFAECLQHLDSSSKTLPGRKGFEVDMKVMCNKLSNDIIATTAFGLKVN
SYDNPKNEFYEIGQSLVFSRGLQFFKFMLSTLVPKLFSLLKLTIFDSAKV
DYFARLVVEAMQYREKHNITRPDMIQLLMEAKNESEDKWTDDEIVAQCFI
FFFAAFENNSNLICTTTYELLYNPDVQERLYEEIVETKKALNGAPLTYDA
VQKMTYMDMVISESLRKWTLAAATDRLCSKDYTLTDDDGTKLFDFKVGDR
INIPISGLHLDDRYFPEPRKFDPDRFSEERKGDMVPYTYLPFGVGPRNCI
GNRYALMQVKGMLFNLLLHYKIEASPRTIKDLWGSASGFNFTPRSGFWMH
LVPRKASFLDH

BO07538.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9b2-PA 505 CG4486-PA 1..505 1..505 2668 100 Plus
Cyp9b1-PA 505 CG4485-PA 1..505 1..505 2096 74.7 Plus
Cyp9f2-PA 516 CG11466-PA 2..515 3..504 1120 43.5 Plus
Cyp9c1-PA 522 CG3616-PA 1..519 1..504 1066 42 Plus
Cyp9h1-PA 518 CG17577-PA 6..518 6..505 1033 40.5 Plus