Clone Sequence Records
BO07538.3prime Sequence
874 bp (837 high quality bases) assembled on 2006-01-06
> BO07538.3prime
ATGGTCTAGAAAGCTTGCTTTTCGCGGCACCAAGTGCATCCAGAATCCGG
ACCTAGGCGTAAAATTGAATCCACTCGCTGATCCCCACAGATCCTTGATG
GTCCTTGGGGAGGCCTCGATTTTGTAATGCAGCAGTAGGTTGAAGAGCAT
ACCCTTGACCTGCATCAAGGCATATCGATTTCCTATGCAATTCCTAGGTC
CCACGCCGAATGGCAAGTAGGTGTAGGGCACCATGTCACCCTTTCGCTCT
TCGCTAAATCGATCCGGGTCAAACTTTCTGGGTTCCGGGAAGTAGCGGTC
ATCCAAGTGCAACCCGGAAATGGGAATGTTGATTCGGTCGCCTACCTTGA
AGTCGAACAGCTTGGTGCCATCATCATCCGTGAGCGTGTAGTCCTTGGAG
CACAGGCGATCGGTGGCGGCGGCTAGAGTCCACTTTCGAAGGGACTCGGA
GATGACCATGTCCATGTAGGTCATCTTCTGCACGGCGTCGTAAGTGAGTG
GTGCACCGTTCAGAGCTTTCTTGGTCTCGACTATCTCCTCGTATAAACGC
TCCTGGACGTCGGGATTGTAAAGCAGTTCGTAGGTTGTGGTGCAGATCAG
ATTGGAGTTGTTTTCGAAGGCGGCGAAGAAGAAAATGAAGCACTGGGCCA
CGATCTCATCGTCCGTCCATTTATCCTCCGACTCATTCTTGGCCTCCATC
AGGAGCTGGATCATGTCGGGCCTGGTGATATTGTGCTTCTCGCGGTACTG
CATGGCTTCCACCACCAAGCGAGCAAAGTAATCAACCTTGGCGGAGTCGA
AAATAGTAAGCTTCAAAAGACTGAAAAGCTTTGGCACCAAGGTGGACAGC
ATGAACTTGAAGAACTGAAGTCCT
BO07538.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4486-PA | 1518 | Cyp9b2-RA | 660..1515 | 874..19 | 4280 | 100 | Minus |
CG4485-PA | 1518 | Cyp9b1-RA | 736..992 | 798..542 | 685 | 90.6 | Minus |
CG4485-PA | 1518 | Cyp9b1-RA | 1027..1106 | 507..428 | 325 | 96.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9b2-RA | 1667 | CG4486-RA | 710..1565 | 874..19 | 4280 | 100 | Minus |
Cyp9b1-RA | 1752 | CG4485-RA | 695..1546 | 870..19 | 1935 | 82.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7130602..7131239 | 182..819 | 3190 | 100 | Plus |
2R | 25286936 | 2R | 7128318..7128939 | 197..818 | 1595 | 83.8 | Plus |
2R | 25286936 | 2R | 7130379..7130545 | 19..185 | 835 | 100 | Plus |
2R | 25286936 | 2R | 7128044..7128209 | 19..184 | 350 | 80.7 | Plus |
2R | 25286936 | 2R | 7131312..7131366 | 820..874 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:15:07 has no hits.
BO07538.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:40 Download gff for
BO07538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4486-PA | 660..1518 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:09 Download gff for
BO07538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4486-PA | 660..1518 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:39 Download gff for
BO07538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 710..1578 | 6..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:43 Download gff for
BO07538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 710..1578 | 6..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:43 Download gff for
BO07538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7130366..7130542 | 6..182 | 97 | <- | Plus |
2R | 7130603..7131239 | 183..819 | 100 | <- | Plus |
2R | 7131312..7131366 | 820..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:39 Download gff for
BO07538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3017871..3018047 | 6..182 | 97 | <- | Plus |
arm_2R | 3018108..3018744 | 183..819 | 100 | <- | Plus |
arm_2R | 3018817..3018871 | 820..874 | 100 | | Plus |
BO07538.5prime Sequence
918 bp (781 high quality bases) assembled on 2006-01-06
> BO07538.5prime
GAAGTTATCAGTCGACATGGCACTCATCGAAATTTGTCTGGCCCTTGTGG
TCATCGGTTATCTCATCTACAAATGGAGCACGGCCACCTTCAAAACCTTT
GAGGAAAGGAAGCTCTACTTCGAAAAGCCATATCCCTTTGTGGGTAATAT
GGCTGCAGCGGCCTTGCAGAAGTCGTCCTTCCAGAGACAACTCACCGAGT
TCTACGAACGCACTCGTCAACACAAACTGGTGGGCTTCTTCAATATGCGC
ACACCTATGATCACGCTAAACGACCCGGAGCTGATCAAAAAGGTCTGCGT
AAAGGACTTTGACCACTTCCCCAACCACCAGCCCTTCATCACCTCCAACG
ATCGCCTGTTCAACGACATGCTCAGCGTGATGAGGGACCAGCGGTGGAAG
CACATGAGAAACACCCTCACTCCGGTCTTCACGGCGGCCAAAATGCGCAA
CATGTTCACCCTGATGAACGAGAGCTTCGCGGAGTGCCTGCAGCACCTGG
ACAGCTCTTCGAAAACGCTTCCCGGCAGAAAGGGCTTTGAGGTGGACATG
AAGGTGATGTGCAACAAGCTCTCCAACGACATCATCGCCACTACCGCATT
CGGGCTAAAGGTTAACTCGTACGACAACCCGAAAAATGAGTTCTACGAGA
TCGGGCAGTCGCTGGTTTTCTCCCGAGGACTTCAGTTCTTCAAGTTCATG
CTGTCCACCTTGGTGCCAAAGCTTTTCAGTCTTTTGAAGCTTACTATTTT
CGACTCCGCCAAGGTTGATTACTTTGCTCGCTTGGTGGTGGAAGCCATGC
AGTACCGCGAGAAGCACAATATCACCAGGCCCGACATGATCCAGCTCCTG
ATGGAGGCCAAGAATGAGTCGGAGGATAAATGGACGGACGATGAGATCGT
GGCCCAGTGCTTCATTTT
BO07538.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4486-PA | 1518 | Cyp9b2-RA | 1..902 | 17..918 | 4510 | 100 | Plus |
CG4485-PA | 1518 | Cyp9b1-RA | 736..902 | 752..918 | 435 | 90.4 | Plus |
CG4485-PA | 1518 | Cyp9b1-RA | 406..464 | 422..480 | 220 | 94.9 | Plus |
CG4485-PA | 1518 | Cyp9b1-RA | 251..315 | 267..331 | 150 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9b2-RA | 1667 | CG4486-RA | 51..952 | 17..918 | 4510 | 100 | Plus |
Cyp9b1-RA | 1752 | CG4485-RA | 131..933 | 116..918 | 1525 | 80.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7131312..7131819 | 730..223 | 2540 | 100 | Minus |
2R | 25286936 | 2R | 7131884..7132089 | 222..17 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 7131052..7131239 | 918..731 | 940 | 100 | Minus |
2R | 25286936 | 2R | 7129029..7129510 | 704..223 | 745 | 77 | Minus |
2R | 25286936 | 2R | 7128753..7128939 | 918..732 | 635 | 89.3 | Minus |
Blast to na_te.dros performed 2015-02-12 23:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc4-element | 2791 | Doc4-element DOC4 2791bp | 663..775 | 170..291 | 112 | 59 | Plus |
BO07538.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:41 Download gff for
BO07538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4486-PA | 1..902 | 17..918 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:10 Download gff for
BO07538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4486-PA | 1..902 | 17..918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:54 Download gff for
BO07538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 46..952 | 9..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:33 Download gff for
BO07538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 46..952 | 9..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:33 Download gff for
BO07538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7131052..7131239 | 731..918 | 100 | <- | Minus |
2R | 7131312..7131819 | 223..730 | 100 | <- | Minus |
2R | 7131884..7132094 | 9..222 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:54 Download gff for
BO07538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3018557..3018744 | 731..918 | 100 | <- | Minus |
arm_2R | 3018817..3019324 | 223..730 | 100 | <- | Minus |
arm_2R | 3019389..3019599 | 9..222 | 98 | | Minus |
BO07538.complete Sequence
1549 bp (1549 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630831
> BO07538.complete
GAAGTTATCAGTCGACATGGCACTCATCGAAATTTGTCTGGCCCTTGTGG
TCATCGGTTATCTCATCTACAAATGGAGCACGGCCACCTTCAAAACCTTT
GAGGAAAGGAAGCTCTACTTCGAAAAGCCATATCCCTTTGTGGGTAATAT
GGCTGCAGCGGCCTTGCAGAAGTCGTCCTTCCAGAGACAACTCACCGAGT
TCTACGAACGCACTCGTCAACACAAACTGGTGGGCTTCTTCAATATGCGC
ACACCTATGATCACGCTAAACGACCCGGAGCTGATCAAAAAGGTCTGCGT
AAAGGACTTTGACCACTTCCCCAACCACCAGCCCTTCATCACCTCCAACG
ATCGCCTGTTCAACGACATGCTCAGCGTGATGAGGGACCAGCGGTGGAAG
CACATGAGAAACACCCTCACTCCGGTCTTCACGGCGGCCAAAATGCGCAA
CATGTTCACCCTGATGAACGAGAGCTTCGCGGAGTGCCTGCAGCACCTGG
ACAGCTCTTCGAAAACGCTTCCCGGCAGAAAGGGCTTTGAGGTGGACATG
AAGGTGATGTGCAACAAGCTCTCCAACGACATCATCGCCACTACCGCATT
CGGGCTAAAGGTTAACTCGTACGACAACCCGAAAAATGAGTTCTACGAGA
TCGGGCAGTCGCTGGTTTTCTCCCGAGGACTTCAGTTCTTCAAGTTCATG
CTGTCCACCTTGGTGCCAAAGCTTTTCAGTCTTTTGAAGCTTACTATTTT
CGACTCCGCCAAGGTTGATTACTTTGCTCGCTTGGTGGTGGAAGCCATGC
AGTACCGCGAGAAGCACAATATCACCAGGCCCGACATGATCCAGCTCCTG
ATGGAGGCCAAGAATGAGTCGGAGGATAAATGGACGGACGATGAGATCGT
GGCCCAGTGCTTCATTTTCTTCTTCGCCGCCTTCGAAAACAACTCCAATC
TGATCTGCACCACAACCTACGAACTGCTTTACAATCCCGACGTCCAGGAG
CGTTTATACGAGGAGATAGTCGAGACCAAGAAAGCTCTGAACGGTGCACC
ACTCACTTACGACGCCGTGCAGAAGATGACCTACATGGACATGGTCATCT
CCGAGTCCCTTCGAAAGTGGACTCTAGCCGCCGCCACCGATCGCCTGTGC
TCCAAGGACTACACGCTCACGGATGATGATGGCACCAAGCTGTTCGACTT
CAAGGTAGGCGACCGAATCAACATTCCCATTTCCGGGTTGCACTTGGATG
ACCGCTACTTCCCGGAACCCAGAAAGTTTGACCCGGATCGATTTAGCGAA
GAGCGAAAGGGTGACATGGTGCCCTACACCTACTTGCCATTCGGCGTGGG
ACCTAGGAATTGCATAGGAAATCGATATGCCTTGATGCAGGTCAAGGGTA
TGCTCTTCAACCTACTGCTGCATTACAAAATCGAGGCCTCCCCAAGGACC
ATCAAGGATCTGTGGGGATCAGCGAGTGGATTCAATTTTACGCCTAGGTC
CGGATTCTGGATGCACTTGGTGCCGCGAAAAGCAAGCTTTCTAGACCAT
BO07538.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:58:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9b2-RA | 1518 | CG4486-PA | 1..1515 | 17..1531 | 7575 | 100 | Plus |
Cyp9b1-RA | 1518 | CG4485-PA | 100..1515 | 116..1531 | 2775 | 79.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9b2-RA | 1667 | CG4486-RA | 51..1565 | 17..1531 | 7575 | 100 | Plus |
Cyp9b1-RA | 1752 | CG4485-RA | 131..1546 | 116..1531 | 2775 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7130602..7131239 | 1368..731 | 3190 | 100 | Minus |
2R | 25286936 | 2R | 7131312..7131819 | 730..223 | 2540 | 100 | Minus |
2R | 25286936 | 2R | 7128318..7128939 | 1353..732 | 1595 | 83.8 | Minus |
2R | 25286936 | 2R | 7131884..7132089 | 222..17 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 7130379..7130545 | 1531..1365 | 835 | 100 | Minus |
2R | 25286936 | 2R | 7129029..7129510 | 704..223 | 745 | 77 | Minus |
2R | 25286936 | 2R | 7128044..7128209 | 1531..1366 | 350 | 80.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:58:24 has no hits.
BO07538.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:21 Download gff for
BO07538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 1..1518 | 17..1535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:05 Download gff for
BO07538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 42..1574 | 9..1544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:48 Download gff for
BO07538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 51..1561 | 17..1527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:21 Download gff for
BO07538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 42..1574 | 9..1544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:06 Download gff for
BO07538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9b2-RA | 51..1561 | 17..1527 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:06 Download gff for
BO07538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7131884..7132089 | 17..222 | 100 | | Minus |
2R | 7130383..7130542 | 1368..1527 | 100 | <- | Minus |
2R | 7130603..7131239 | 731..1367 | 100 | <- | Minus |
2R | 7131312..7131819 | 223..730 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:48 Download gff for
BO07538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3017888..3018047 | 1368..1527 | 100 | <- | Minus |
arm_2R | 3018108..3018744 | 731..1367 | 100 | <- | Minus |
arm_2R | 3018817..3019324 | 223..730 | 100 | <- | Minus |
arm_2R | 3019389..3019594 | 17..222 | 100 | | Minus |
BO07538.pep Sequence
Translation from 16 to 1549
> BO07538.pep
MALIEICLALVVIGYLIYKWSTATFKTFEERKLYFEKPYPFVGNMAAAAL
QKSSFQRQLTEFYERTRQHKLVGFFNMRTPMITLNDPELIKKVCVKDFDH
FPNHQPFITSNDRLFNDMLSVMRDQRWKHMRNTLTPVFTAAKMRNMFTLM
NESFAECLQHLDSSSKTLPGRKGFEVDMKVMCNKLSNDIIATTAFGLKVN
SYDNPKNEFYEIGQSLVFSRGLQFFKFMLSTLVPKLFSLLKLTIFDSAKV
DYFARLVVEAMQYREKHNITRPDMIQLLMEAKNESEDKWTDDEIVAQCFI
FFFAAFENNSNLICTTTYELLYNPDVQERLYEEIVETKKALNGAPLTYDA
VQKMTYMDMVISESLRKWTLAAATDRLCSKDYTLTDDDGTKLFDFKVGDR
INIPISGLHLDDRYFPEPRKFDPDRFSEERKGDMVPYTYLPFGVGPRNCI
GNRYALMQVKGMLFNLLLHYKIEASPRTIKDLWGSASGFNFTPRSGFWMH
LVPRKASFLDH
BO07538.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9b2-PA | 505 | CG4486-PA | 1..505 | 1..505 | 2668 | 100 | Plus |
Cyp9b1-PA | 505 | CG4485-PA | 1..505 | 1..505 | 2096 | 74.7 | Plus |
Cyp9f2-PA | 516 | CG11466-PA | 2..515 | 3..504 | 1120 | 43.5 | Plus |
Cyp9c1-PA | 522 | CG3616-PA | 1..519 | 1..504 | 1066 | 42 | Plus |
Cyp9h1-PA | 518 | CG17577-PA | 6..518 | 6..505 | 1033 | 40.5 | Plus |