Clone BO07541 Report

Search the DGRC for BO07541

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG11876-RA
Protein status:BO07541.pep: validated full length
Sequenced Size:1129

Clone Sequence Records

BO07541.3prime Sequence

830 bp (794 high quality bases) assembled on 2006-01-06

> BO07541.3prime
ATGGTCTAGAAAGCTTGCCTTGTTGGCCGCAGCGGCCTTGCCCACTTTGC
CACCCAAGACCTTAAGAGTCGCCTCCACGAGATCCTGAACGCGGGGCAGG
GCGTGGGCCTCCAGCGTCTTGGCATAGGGCATGGGCACATCCACGCCGGC
GCAGCGCCATACGGGGGCGTCCAGCTCGAAGAAGGTCTGGTCCTCCATTA
TGCGGGCGCAGATCTCAGCTCCAACGCCGTGTTGGGGCCAGCCGTTCTCC
ACGGTCACCAGATGGTGGGTCTTTCGTACAGAGGCGAAGATGGTCGCCGT
GTCCAGAGGACGAATGGAGCGCAGGTTAATGACCTCAGCCTCAATACCCT
TCTTGGCCAGCTCGGCAGCTGCCAGAAGCGATGTCTCCACCGCCTTGGAA
TGCGCCACCAGGGTAATGTCCTTGCCCGGCCGCATTACCTTGGCCTTGCC
GATGGGCACCAAGAAGTCCTTGTCGGCCACGTTATCGGCCACAGGGAATG
CCGTGCCATAGACCAGCTCATTCTCCAGGAAGACCACTGGATCGGGATCA
CGGATTGCGGACTTCAACAGTCCGCGGGCATCCTCGGCATCGTATGGCGA
AAGGACCTTCAGGCCGGGGCAGTGGGCGTACCAGGCGGCGAAGCACTGAG
AGTGCTGGGCGGCAACACCGGAAGCGGCTCCATTGGGACCACGGAACACA
ATGGGCACATTGACGGCACCGGCAGACATGTAGAAGGTCTTGGCCGCCGA
GTTGATGATGTGATCGATGGCCTGCATGGAGAAGTTCCAGGTCATGAACT
CGCACACGGGACGCAGACCGGCCATGGCAG

BO07541.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11876-PA 1098 CG11876-RA 284..1095 830..19 4060 100 Minus
CG11876-PD 1098 CG11876-RD 284..1095 830..19 4060 100 Minus
CG11876-PC 822 CG11876-RC 284..354 830..760 355 100 Minus
CG11876-PB 822 CG11876-RB 284..354 830..760 355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11876-RD 1386 CG11876-RD 334..1145 830..19 4060 100 Minus
CG11876-RA 1455 CG11876-RA 403..1214 830..19 4060 100 Minus
CG11876-RB 1025 CG11876-RB 437..507 830..760 355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29115094..29115508 759..345 2075 100 Minus
3R 32079331 3R 29115747..29115956 228..19 1050 100 Minus
3R 32079331 3R 29115566..29115687 348..227 610 100 Minus
3R 32079331 3R 29114085..29114155 830..760 355 100 Minus
Blast to na_te.dros performed on 2015-02-12 23:37:33 has no hits.

BO07541.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:46 Download gff for BO07541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11876-PD 284..1098 18..830 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:18 Download gff for BO07541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11876-PD 284..1098 18..830 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:27:00 Download gff for BO07541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11876-RA 403..1214 19..830 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:42 Download gff for BO07541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11876-RA 403..1214 19..830 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:42 Download gff for BO07541.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29115748..29115956 19..227 100   Minus
3R 29114085..29114155 760..830 100 -> Minus
3R 29115094..29115505 348..759 100 -> Minus
3R 29115567..29115686 228..347 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:27:00 Download gff for BO07541.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24939807..24939877 760..830 100 -> Minus
arm_3R 24940816..24941227 348..759 100 -> Minus
arm_3R 24941289..24941408 228..347 100 -> Minus
arm_3R 24941470..24941678 19..227 100   Minus

BO07541.5prime Sequence

857 bp (776 high quality bases) assembled on 2006-01-06

> BO07541.5prime
GAAGTTATCAGTCGACATGCTCCGAACCCGACTCATCCAGGCGGCCAGCT
CCGCCCAGCGAGCGTTCTCCACCAGCCAGAAGGCCCTGGCGGCCAAGCAG
ATGACCGTGCGAGATGCCCTCAACAGCGCATTGGACGATGAGCTGGCCCG
CGACGACCGCGTCTTCATCCTGGGCGAGGAGGTGGCCCAGTACGACGGTG
CTTACAAGGTTTCCCGTGGACTGTGGAAGAAGTACGGCGACAAGCGCGTC
ATCGACACGCCAATCACAGAGATGGGCTTTGCCGGCATCGCTGTTGGCGC
TGCCATGGCCGGTCTGCGTCCCGTGTGCGAGTTCATGACCTGGAACTTCT
CCATGCAGGCCATCGATCACATCATCAACTCGGCGGCCAAGACCTTCTAC
ATGTCTGCCGGTGCCGTCAATGTGCCCATTGTGTTCCGTGGTCCCAATGG
AGCCGCTTCCGGTGTTGCCGCCCAGCACTCTCAGTGCTTCGCCGCCTGGT
ACGCCCACTGCCCCGGCCTGAAGGTCCTTTCGCCATACGATGCCGAGGAT
GCCCGCGGACTGTTGAAGTCCGCAATCCGTGATCCCGATCCAGTGGTCTT
CCTGGAGAATGAGCTGGTCTATGGCACGGCATTCCCTGTGGCCGATAACG
TGGCCGACAAGGACTTCTTGGTGCCCATCGGCAAGGCCAAGGTAATGCGG
CCGGGCAAGGACATTACCCTGGTGGCGCATTCCAAGGCGGTGGAGACATC
GCTTCTGGCAGCTGCCGAGCTGGCCAAGAAGGGTATTGAGGCTGAGGTCA
TTAACCTGCGCTCCATTCGTCCTCTGGACACGGCGACCATCTTCGCCTCT
GTACGAA

BO07541.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11876-PA 1098 CG11876-RA 1..841 17..857 4205 100 Plus
CG11876-PD 1098 CG11876-RD 1..841 17..857 4205 100 Plus
CG11876-PC 822 CG11876-RC 1..354 17..370 1770 100 Plus
CG11876-PB 822 CG11876-RB 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11876-RD 1386 CG11876-RD 51..891 17..857 4205 100 Plus
CG11876-RA 1455 CG11876-RA 120..960 17..857 4205 100 Plus
CG11876-RB 1025 CG11876-RB 154..507 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29115094..29115508 371..785 2075 100 Plus
3R 32079331 3R 29113258..29113451 17..210 970 100 Plus
3R 32079331 3R 29113992..29114155 207..370 820 100 Plus
3R 32079331 3R 29115566..29115641 782..857 380 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:15:13 has no hits.

BO07541.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:47 Download gff for BO07541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11876-PD 1..839 17..855 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:19 Download gff for BO07541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11876-PD 1..839 17..855 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:41 Download gff for BO07541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11876-RA 115..960 13..857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:08 Download gff for BO07541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11876-RA 115..960 13..857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:08 Download gff for BO07541.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29115567..29115641 783..857 100   Plus
3R 29113253..29113449 13..208 99 -> Plus
3R 29113994..29114155 209..370 100 -> Plus
3R 29115094..29115505 371..782 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:41 Download gff for BO07541.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24941289..24941363 783..857 100   Plus
arm_3R 24938975..24939171 13..208 99 -> Plus
arm_3R 24939716..24939877 209..370 100 -> Plus
arm_3R 24940816..24941227 371..782 100 -> Plus

BO07541.complete Sequence

1129 bp (1129 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630832

> BO07541.complete
GAAGTTATCAGTCGACATGCTCCGAACCCGACTCATCCAGGCGGCCAGCT
CCGCCCAGCGAGCGTTCTCCACCAGCCAGAAGGCCCTGGCGGCCAAGCAG
ATGACCGTGCGAGATGCCCTCAACAGCGCATTGGACGATGAGCTGGCCCG
CGACGACCGCGTCTTCATCCTGGGCGAGGAGGTGGCCCAGTACGACGGTG
CTTACAAGGTTTCCCGTGGACTGTGGAAGAAGTACGGCGACAAGCGCGTC
ATCGACACGCCAATCACAGAGATGGGCTTTGCCGGCATCGCTGTTGGCGC
TGCCATGGCCGGTCTGCGTCCCGTGTGCGAGTTCATGACCTGGAACTTCT
CCATGCAGGCCATCGATCACATCATCAACTCGGCGGCCAAGACCTTCTAC
ATGTCTGCCGGTGCCGTCAATGTGCCCATTGTGTTCCGTGGTCCCAATGG
AGCCGCTTCCGGTGTTGCCGCCCAGCACTCTCAGTGCTTCGCCGCCTGGT
ACGCCCACTGCCCCGGCCTGAAGGTCCTTTCGCCATACGATGCCGAGGAT
GCCCGCGGACTGTTGAAGTCCGCAATCCGTGATCCCGATCCAGTGGTCTT
CCTGGAGAATGAGCTGGTCTATGGCACGGCATTCCCTGTGGCCGATAACG
TGGCCGACAAGGACTTCTTGGTGCCCATCGGCAAGGCCAAGGTAATGCGG
CCGGGCAAGGACATTACCCTGGTGGCGCATTCCAAGGCGGTGGAGACATC
GCTTCTGGCAGCTGCCGAGCTGGCCAAGAAGGGTATTGAGGCTGAGGTCA
TTAACCTGCGCTCCATTCGTCCTCTGGACACGGCGACCATCTTCGCCTCT
GTACGAAAGACCCACCATCTGGTGACCGTGGAGAACGGCTGGCCCCAACA
CGGCGTTGGAGCTGAGATCTGCGCCCGCATAATGGAGGACCAGACCTTCT
TCGAGCTGGACGCCCCCGTATGGCGCTGCGCCGGCGTGGATGTGCCCATG
CCCTATGCCAAGACGCTGGAGGCCCACGCCCTGCCCCGCGTTCAGGATCT
CGTGGAGGCGACTCTTAAGGTCTTGGGTGGCAAAGTGGGCAAGGCCGCTG
CGGCCAACAAGGCAAGCTTTCTAGACCAT

BO07541.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11876-RD 1098 CG11876-PD 1..1095 17..1111 5475 100 Plus
CG11876-RA 1098 CG11876-PA 1..1095 17..1111 5475 100 Plus
CG11876-RB 822 CG11876-PB 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11876-RD 1386 CG11876-RD 51..1145 17..1111 5475 100 Plus
CG11876-RA 1455 CG11876-RA 120..1214 17..1111 5475 100 Plus
CG11876-RB 1025 CG11876-RB 154..507 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29115094..29115508 371..785 2075 100 Plus
3R 32079331 3R 29115747..29115956 902..1111 1050 100 Plus
3R 32079331 3R 29113258..29113451 17..210 970 100 Plus
3R 32079331 3R 29113992..29114155 207..370 820 100 Plus
3R 32079331 3R 29115566..29115687 782..903 610 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:48:12 has no hits.

BO07541.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:50 Download gff for BO07541.complete
Subject Subject Range Query Range Percent Splice Strand
CG11876-RD 1..1098 17..1112 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:59 Download gff for BO07541.complete
Subject Subject Range Query Range Percent Splice Strand
CG11876-RD 149..1248 13..1111 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:10 Download gff for BO07541.complete
Subject Subject Range Query Range Percent Splice Strand
CG11876-RA 120..1214 17..1113 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:50 Download gff for BO07541.complete
Subject Subject Range Query Range Percent Splice Strand
CG11876-RD 149..1248 13..1111 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:37 Download gff for BO07541.complete
Subject Subject Range Query Range Percent Splice Strand
CG11876-RA 120..1214 17..1113 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:37 Download gff for BO07541.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29115748..29115956 903..1113 99   Plus
3R 29113258..29113449 17..208 100 -> Plus
3R 29113994..29114155 209..370 100 -> Plus
3R 29115094..29115505 371..782 100 -> Plus
3R 29115567..29115686 783..902 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:10 Download gff for BO07541.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24938980..24939171 17..208 100 -> Plus
arm_3R 24939716..24939877 209..370 100 -> Plus
arm_3R 24940816..24941227 371..782 100 -> Plus
arm_3R 24941289..24941408 783..902 100 -> Plus
arm_3R 24941470..24941678 903..1113 99   Plus

BO07541.pep Sequence

Translation from 16 to 1129

> BO07541.pep
MLRTRLIQAASSAQRAFSTSQKALAAKQMTVRDALNSALDDELARDDRVF
ILGEEVAQYDGAYKVSRGLWKKYGDKRVIDTPITEMGFAGIAVGAAMAGL
RPVCEFMTWNFSMQAIDHIINSAAKTFYMSAGAVNVPIVFRGPNGAASGV
AAQHSQCFAAWYAHCPGLKVLSPYDAEDARGLLKSAIRDPDPVVFLENEL
VYGTAFPVADNVADKDFLVPIGKAKVMRPGKDITLVAHSKAVETSLLAAA
ELAKKGIEAEVINLRSIRPLDTATIFASVRKTHHLVTVENGWPQHGVGAE
ICARIMEDQTFFELDAPVWRCAGVDVPMPYAKTLEAHALPRVQDLVEATL
KVLGGKVGKAAAANKASFLDH

BO07541.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11876-PD 365 CG11876-PD 1..365 1..365 1866 100 Plus
CG11876-PA 365 CG11876-PA 1..365 1..365 1866 100 Plus
CG11876-PB 273 CG11876-PB 1..118 1..118 596 100 Plus
CG11876-PC 273 CG11876-PC 1..118 1..118 596 100 Plus
CG17691-PE 364 CG17691-PE 41..341 27..330 468 36.8 Plus