Clone Sequence Records
BO07541.3prime Sequence
830 bp (794 high quality bases) assembled on 2006-01-06
> BO07541.3prime
ATGGTCTAGAAAGCTTGCCTTGTTGGCCGCAGCGGCCTTGCCCACTTTGC
CACCCAAGACCTTAAGAGTCGCCTCCACGAGATCCTGAACGCGGGGCAGG
GCGTGGGCCTCCAGCGTCTTGGCATAGGGCATGGGCACATCCACGCCGGC
GCAGCGCCATACGGGGGCGTCCAGCTCGAAGAAGGTCTGGTCCTCCATTA
TGCGGGCGCAGATCTCAGCTCCAACGCCGTGTTGGGGCCAGCCGTTCTCC
ACGGTCACCAGATGGTGGGTCTTTCGTACAGAGGCGAAGATGGTCGCCGT
GTCCAGAGGACGAATGGAGCGCAGGTTAATGACCTCAGCCTCAATACCCT
TCTTGGCCAGCTCGGCAGCTGCCAGAAGCGATGTCTCCACCGCCTTGGAA
TGCGCCACCAGGGTAATGTCCTTGCCCGGCCGCATTACCTTGGCCTTGCC
GATGGGCACCAAGAAGTCCTTGTCGGCCACGTTATCGGCCACAGGGAATG
CCGTGCCATAGACCAGCTCATTCTCCAGGAAGACCACTGGATCGGGATCA
CGGATTGCGGACTTCAACAGTCCGCGGGCATCCTCGGCATCGTATGGCGA
AAGGACCTTCAGGCCGGGGCAGTGGGCGTACCAGGCGGCGAAGCACTGAG
AGTGCTGGGCGGCAACACCGGAAGCGGCTCCATTGGGACCACGGAACACA
ATGGGCACATTGACGGCACCGGCAGACATGTAGAAGGTCTTGGCCGCCGA
GTTGATGATGTGATCGATGGCCTGCATGGAGAAGTTCCAGGTCATGAACT
CGCACACGGGACGCAGACCGGCCATGGCAG
BO07541.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11876-PA | 1098 | CG11876-RA | 284..1095 | 830..19 | 4060 | 100 | Minus |
CG11876-PD | 1098 | CG11876-RD | 284..1095 | 830..19 | 4060 | 100 | Minus |
CG11876-PC | 822 | CG11876-RC | 284..354 | 830..760 | 355 | 100 | Minus |
CG11876-PB | 822 | CG11876-RB | 284..354 | 830..760 | 355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11876-RD | 1386 | CG11876-RD | 334..1145 | 830..19 | 4060 | 100 | Minus |
CG11876-RA | 1455 | CG11876-RA | 403..1214 | 830..19 | 4060 | 100 | Minus |
CG11876-RB | 1025 | CG11876-RB | 437..507 | 830..760 | 355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29115094..29115508 | 759..345 | 2075 | 100 | Minus |
3R | 32079331 | 3R | 29115747..29115956 | 228..19 | 1050 | 100 | Minus |
3R | 32079331 | 3R | 29115566..29115687 | 348..227 | 610 | 100 | Minus |
3R | 32079331 | 3R | 29114085..29114155 | 830..760 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:37:33 has no hits.
BO07541.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:46 Download gff for
BO07541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-PD | 284..1098 | 18..830 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:18 Download gff for
BO07541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-PD | 284..1098 | 18..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:27:00 Download gff for
BO07541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RA | 403..1214 | 19..830 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:42 Download gff for
BO07541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RA | 403..1214 | 19..830 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:42 Download gff for
BO07541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29115748..29115956 | 19..227 | 100 | | Minus |
3R | 29114085..29114155 | 760..830 | 100 | -> | Minus |
3R | 29115094..29115505 | 348..759 | 100 | -> | Minus |
3R | 29115567..29115686 | 228..347 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:27:00 Download gff for
BO07541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24939807..24939877 | 760..830 | 100 | -> | Minus |
arm_3R | 24940816..24941227 | 348..759 | 100 | -> | Minus |
arm_3R | 24941289..24941408 | 228..347 | 100 | -> | Minus |
arm_3R | 24941470..24941678 | 19..227 | 100 | | Minus |
BO07541.5prime Sequence
857 bp (776 high quality bases) assembled on 2006-01-06
> BO07541.5prime
GAAGTTATCAGTCGACATGCTCCGAACCCGACTCATCCAGGCGGCCAGCT
CCGCCCAGCGAGCGTTCTCCACCAGCCAGAAGGCCCTGGCGGCCAAGCAG
ATGACCGTGCGAGATGCCCTCAACAGCGCATTGGACGATGAGCTGGCCCG
CGACGACCGCGTCTTCATCCTGGGCGAGGAGGTGGCCCAGTACGACGGTG
CTTACAAGGTTTCCCGTGGACTGTGGAAGAAGTACGGCGACAAGCGCGTC
ATCGACACGCCAATCACAGAGATGGGCTTTGCCGGCATCGCTGTTGGCGC
TGCCATGGCCGGTCTGCGTCCCGTGTGCGAGTTCATGACCTGGAACTTCT
CCATGCAGGCCATCGATCACATCATCAACTCGGCGGCCAAGACCTTCTAC
ATGTCTGCCGGTGCCGTCAATGTGCCCATTGTGTTCCGTGGTCCCAATGG
AGCCGCTTCCGGTGTTGCCGCCCAGCACTCTCAGTGCTTCGCCGCCTGGT
ACGCCCACTGCCCCGGCCTGAAGGTCCTTTCGCCATACGATGCCGAGGAT
GCCCGCGGACTGTTGAAGTCCGCAATCCGTGATCCCGATCCAGTGGTCTT
CCTGGAGAATGAGCTGGTCTATGGCACGGCATTCCCTGTGGCCGATAACG
TGGCCGACAAGGACTTCTTGGTGCCCATCGGCAAGGCCAAGGTAATGCGG
CCGGGCAAGGACATTACCCTGGTGGCGCATTCCAAGGCGGTGGAGACATC
GCTTCTGGCAGCTGCCGAGCTGGCCAAGAAGGGTATTGAGGCTGAGGTCA
TTAACCTGCGCTCCATTCGTCCTCTGGACACGGCGACCATCTTCGCCTCT
GTACGAA
BO07541.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11876-PA | 1098 | CG11876-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
CG11876-PD | 1098 | CG11876-RD | 1..841 | 17..857 | 4205 | 100 | Plus |
CG11876-PC | 822 | CG11876-RC | 1..354 | 17..370 | 1770 | 100 | Plus |
CG11876-PB | 822 | CG11876-RB | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11876-RD | 1386 | CG11876-RD | 51..891 | 17..857 | 4205 | 100 | Plus |
CG11876-RA | 1455 | CG11876-RA | 120..960 | 17..857 | 4205 | 100 | Plus |
CG11876-RB | 1025 | CG11876-RB | 154..507 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29115094..29115508 | 371..785 | 2075 | 100 | Plus |
3R | 32079331 | 3R | 29113258..29113451 | 17..210 | 970 | 100 | Plus |
3R | 32079331 | 3R | 29113992..29114155 | 207..370 | 820 | 100 | Plus |
3R | 32079331 | 3R | 29115566..29115641 | 782..857 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:15:13 has no hits.
BO07541.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:47 Download gff for
BO07541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-PD | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:19 Download gff for
BO07541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-PD | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:41 Download gff for
BO07541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RA | 115..960 | 13..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:08 Download gff for
BO07541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RA | 115..960 | 13..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:08 Download gff for
BO07541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29115567..29115641 | 783..857 | 100 | | Plus |
3R | 29113253..29113449 | 13..208 | 99 | -> | Plus |
3R | 29113994..29114155 | 209..370 | 100 | -> | Plus |
3R | 29115094..29115505 | 371..782 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:41 Download gff for
BO07541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24941289..24941363 | 783..857 | 100 | | Plus |
arm_3R | 24938975..24939171 | 13..208 | 99 | -> | Plus |
arm_3R | 24939716..24939877 | 209..370 | 100 | -> | Plus |
arm_3R | 24940816..24941227 | 371..782 | 100 | -> | Plus |
BO07541.complete Sequence
1129 bp (1129 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630832
> BO07541.complete
GAAGTTATCAGTCGACATGCTCCGAACCCGACTCATCCAGGCGGCCAGCT
CCGCCCAGCGAGCGTTCTCCACCAGCCAGAAGGCCCTGGCGGCCAAGCAG
ATGACCGTGCGAGATGCCCTCAACAGCGCATTGGACGATGAGCTGGCCCG
CGACGACCGCGTCTTCATCCTGGGCGAGGAGGTGGCCCAGTACGACGGTG
CTTACAAGGTTTCCCGTGGACTGTGGAAGAAGTACGGCGACAAGCGCGTC
ATCGACACGCCAATCACAGAGATGGGCTTTGCCGGCATCGCTGTTGGCGC
TGCCATGGCCGGTCTGCGTCCCGTGTGCGAGTTCATGACCTGGAACTTCT
CCATGCAGGCCATCGATCACATCATCAACTCGGCGGCCAAGACCTTCTAC
ATGTCTGCCGGTGCCGTCAATGTGCCCATTGTGTTCCGTGGTCCCAATGG
AGCCGCTTCCGGTGTTGCCGCCCAGCACTCTCAGTGCTTCGCCGCCTGGT
ACGCCCACTGCCCCGGCCTGAAGGTCCTTTCGCCATACGATGCCGAGGAT
GCCCGCGGACTGTTGAAGTCCGCAATCCGTGATCCCGATCCAGTGGTCTT
CCTGGAGAATGAGCTGGTCTATGGCACGGCATTCCCTGTGGCCGATAACG
TGGCCGACAAGGACTTCTTGGTGCCCATCGGCAAGGCCAAGGTAATGCGG
CCGGGCAAGGACATTACCCTGGTGGCGCATTCCAAGGCGGTGGAGACATC
GCTTCTGGCAGCTGCCGAGCTGGCCAAGAAGGGTATTGAGGCTGAGGTCA
TTAACCTGCGCTCCATTCGTCCTCTGGACACGGCGACCATCTTCGCCTCT
GTACGAAAGACCCACCATCTGGTGACCGTGGAGAACGGCTGGCCCCAACA
CGGCGTTGGAGCTGAGATCTGCGCCCGCATAATGGAGGACCAGACCTTCT
TCGAGCTGGACGCCCCCGTATGGCGCTGCGCCGGCGTGGATGTGCCCATG
CCCTATGCCAAGACGCTGGAGGCCCACGCCCTGCCCCGCGTTCAGGATCT
CGTGGAGGCGACTCTTAAGGTCTTGGGTGGCAAAGTGGGCAAGGCCGCTG
CGGCCAACAAGGCAAGCTTTCTAGACCAT
BO07541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11876-RD | 1098 | CG11876-PD | 1..1095 | 17..1111 | 5475 | 100 | Plus |
CG11876-RA | 1098 | CG11876-PA | 1..1095 | 17..1111 | 5475 | 100 | Plus |
CG11876-RB | 822 | CG11876-PB | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11876-RD | 1386 | CG11876-RD | 51..1145 | 17..1111 | 5475 | 100 | Plus |
CG11876-RA | 1455 | CG11876-RA | 120..1214 | 17..1111 | 5475 | 100 | Plus |
CG11876-RB | 1025 | CG11876-RB | 154..507 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29115094..29115508 | 371..785 | 2075 | 100 | Plus |
3R | 32079331 | 3R | 29115747..29115956 | 902..1111 | 1050 | 100 | Plus |
3R | 32079331 | 3R | 29113258..29113451 | 17..210 | 970 | 100 | Plus |
3R | 32079331 | 3R | 29113992..29114155 | 207..370 | 820 | 100 | Plus |
3R | 32079331 | 3R | 29115566..29115687 | 782..903 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:48:12 has no hits.
BO07541.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:50 Download gff for
BO07541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RD | 1..1098 | 17..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:59 Download gff for
BO07541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RD | 149..1248 | 13..1111 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:10 Download gff for
BO07541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RA | 120..1214 | 17..1113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:50 Download gff for
BO07541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RD | 149..1248 | 13..1111 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:37 Download gff for
BO07541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RA | 120..1214 | 17..1113 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:37 Download gff for
BO07541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29115748..29115956 | 903..1113 | 99 | | Plus |
3R | 29113258..29113449 | 17..208 | 100 | -> | Plus |
3R | 29113994..29114155 | 209..370 | 100 | -> | Plus |
3R | 29115094..29115505 | 371..782 | 100 | -> | Plus |
3R | 29115567..29115686 | 783..902 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:10 Download gff for
BO07541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24938980..24939171 | 17..208 | 100 | -> | Plus |
arm_3R | 24939716..24939877 | 209..370 | 100 | -> | Plus |
arm_3R | 24940816..24941227 | 371..782 | 100 | -> | Plus |
arm_3R | 24941289..24941408 | 783..902 | 100 | -> | Plus |
arm_3R | 24941470..24941678 | 903..1113 | 99 | | Plus |
BO07541.pep Sequence
Translation from 16 to 1129
> BO07541.pep
MLRTRLIQAASSAQRAFSTSQKALAAKQMTVRDALNSALDDELARDDRVF
ILGEEVAQYDGAYKVSRGLWKKYGDKRVIDTPITEMGFAGIAVGAAMAGL
RPVCEFMTWNFSMQAIDHIINSAAKTFYMSAGAVNVPIVFRGPNGAASGV
AAQHSQCFAAWYAHCPGLKVLSPYDAEDARGLLKSAIRDPDPVVFLENEL
VYGTAFPVADNVADKDFLVPIGKAKVMRPGKDITLVAHSKAVETSLLAAA
ELAKKGIEAEVINLRSIRPLDTATIFASVRKTHHLVTVENGWPQHGVGAE
ICARIMEDQTFFELDAPVWRCAGVDVPMPYAKTLEAHALPRVQDLVEATL
KVLGGKVGKAAAANKASFLDH
BO07541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11876-PD | 365 | CG11876-PD | 1..365 | 1..365 | 1866 | 100 | Plus |
CG11876-PA | 365 | CG11876-PA | 1..365 | 1..365 | 1866 | 100 | Plus |
CG11876-PB | 273 | CG11876-PB | 1..118 | 1..118 | 596 | 100 | Plus |
CG11876-PC | 273 | CG11876-PC | 1..118 | 1..118 | 596 | 100 | Plus |
CG17691-PE | 364 | CG17691-PE | 41..341 | 27..330 | 468 | 36.8 | Plus |