Clone BO07542 Report

Search the DGRC for BO07542

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptSsl1-RA
Protein status:BO07542.pep: full length peptide match
Sequenced Size:1348

Clone Sequence Records

BO07542.3prime Sequence

917 bp (861 high quality bases) assembled on 2006-01-06

> BO07542.3prime
ATGGTCTAGAAAGCTTGCCATCCCACACTGGCCGCGCTGCTTTGAGGGCC
CTGGGTGTGCATCAACCTGGTCAGACTTGGAACTTTGCTGGTAAACCAGA
CCGTCTACGCCGGGAATGGTGTTGCATCCCACGCAGGCGTGCAATGTGTC
GTGAATGAAGATGTCGCAGTCAACGCAGAAGAACTGCTTGCAGAAACCGC
ATCTGAAGACGACTTTATCGGCGACCTTGTCAACGCCTTGCCCAAGAGCT
TTGGCGCAGCCGTAACATTCCCTGACATCGCTGGTGAGGTCGGATGACGA
AGCAGGCATCGCCTCAAACGGCAGTTCCTCAAAATTTGGCACCGGGAAAA
GGTGGTGGTAGGAACGCGCCAAGTGCGGCGCGGAGACCAGGGTGAGGCCG
CAAGACTGGCACTCCACGGGCAGCTCGCAGTACTTGCTGTTGCATTGCGG
GCAGTGGTGGCCAGTAGTGGTCAGTTCACTGGGCTCCTCCAAGTTCTCTA
TGTGGCACATGCACATGGACAATGGCGCGTCCTTGCCCTCAACTTCATTC
TTTGTGTGCGGGAAGCCCATGCGAATAAGCGAGTTGTGCTGAGTCTTAGC
GGCGGGCGGTGGATCTACCTGAGACATGAGTTGATCCCGAAAATGTGCAT
CATCCAAAACAGCCCCGAAGGTGCCCATTGTTTGCTGAGTGAGGTAGCGG
GCCACGTGAATCTCAGCGGACAGGGAAATAACCGAGCAGCGTATGCCCTC
CTTTTTTAACTCGTCGATGGTGAGGTTAATATCGACAGGATCACATGTGG
TGAGCGAGCCCATGATAATGACGATCTCTCGGGAGGCGTGCGACGGCACC
ACCTTAAGCGATTTTAGGGCCAGATCTANGCCATTTTGCAGCGAAGGCTC
GCTGGTCAAGGACACGT

BO07542.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11115-PA 1317 Ssl1-RA 416..1314 917..19 4476 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl1-RB 1613 CG11115-RB 536..1434 917..19 4484 99.9 Minus
Ssl1-RA 1713 CG11115-RA 636..1534 917..19 4484 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22879886..22880784 917..19 4484 99.9 Minus
Blast to na_te.dros performed on 2015-02-13 05:31:34 has no hits.

BO07542.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:48 Download gff for BO07542.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssl1-PA 416..1317 15..917 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:20 Download gff for BO07542.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11115-PA 416..1317 15..917 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:02 Download gff for BO07542.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 636..1548 7..917 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:34 Download gff for BO07542.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 636..1548 7..917 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:34 Download gff for BO07542.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22879886..22880798 7..917 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:02 Download gff for BO07542.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22872986..22873898 7..917 99   Minus

BO07542.5prime Sequence

905 bp (857 high quality bases) assembled on 2006-01-06

> BO07542.5prime
GAAGTTATCAGTCGACATGGCCGACGATGAGCAAGAGGACCAGAAGGAGT
ACCGCTGGGAAACGGGCTATGAAAAGACATGGGAGGCCATCAAGGACGAC
GAGGATGGGATGCTGGATGGAGCCATTGCAGAGATCATTCAGAAGGCCAA
ACGCCAGAGGCAGGCTCAAAAGTCCAAGCAGAACCGCCTGGGCATGATGC
GCCACATGTTCGTTGTGCTCGATTGCTCTGAGTCCATGAGCGTGCCTGAT
TTGAAACCCACACGACTGCGGTGCACCGTCAAGCTGCTGGAGCTGTTTAT
CGAGGAGTTCTTCGATCAGAACCCCATCAGCCAATTAGGACTCATAGCGC
TAAAAGCTAAGCGAGCGGAGAAGGTGACCGAACTTACCGGCACTTCGCGC
GTGCACCTCAAAGCGCTAGAGAGCTTGGCTAACGTGTCCTTGACCAGCGA
GCCTTCGCTGCAAAATGGCCTAGATCTGGCCCTAAAATCGCTTAAGGTGG
TGCCGTCGCACGCCTCCCGAGAGATCGTCATTATCATGGGCTCGCTCACC
ACATGTGATCCTGTCGATATTAACCTCACCATCGACGAGTTAAAAAAGGA
GGGCATACGCTGCTCGGTTATTTCCCTGTCCGCTGAGATTCACGTGGCCC
GCTACCTCACTCAGCAAACAATGGGCACCTTCGGGGCTGTTTTGGATGAT
GCACATTTTCGGGATCAACTCATGTCTCAGGTAGATCCACCGCCCGCCGC
TAAGACTCAGCACAACTCGCTTATTCGCATGGGCTTCCCGCACACAAAGA
ATGAAGTTGAGGGCAAGGACGCGCCATTGTCCATGTGCATGTGCCACATA
GAGAACTTGGAGGAGCCCAGTGAACTGACCACTACTGGCCCACACTGCCC
GCAAT

BO07542.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11115-PA 1317 Ssl1-RA 1..889 17..905 4395 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl1-RB 1613 CG11115-RB 121..1009 17..905 4415 99.8 Plus
Ssl1-RA 1713 CG11115-RA 221..1109 17..905 4415 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22879876..22880359 422..905 2390 99.6 Plus
3L 28110227 3L 22879483..22879825 81..423 1715 100 Plus
3L 28110227 3L 22879366..22879431 17..82 330 100 Plus
Blast to na_te.dros performed on 2015-02-09 19:37:26 has no hits.

BO07542.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:49 Download gff for BO07542.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssl1-PA 1..889 17..905 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:22 Download gff for BO07542.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11115-PA 1..889 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:09:34 Download gff for BO07542.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 218..1109 10..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:37 Download gff for BO07542.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 218..1109 10..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:37 Download gff for BO07542.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22879363..22879430 10..81 94 -> Plus
3L 22879484..22879825 82..423 100 -> Plus
3L 22879878..22880359 424..905 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:09:34 Download gff for BO07542.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22872463..22872530 10..81 94 -> Plus
arm_3L 22872584..22872925 82..423 100 -> Plus
arm_3L 22872978..22873459 424..905 99   Plus

BO07542.complete Sequence

1348 bp (1348 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630833

> BO07542.complete
GAAGTTATCAGTCGACATGGCCGACGATGAGCAAGAGGACCAGAAGGAGT
ACCGCTGGGAAACGGGCTATGAAAAGACATGGGAGGCCATCAAGGACGAC
GAGGATGGGATGCTGGATGGAGCCATTGCAGAGATCATTCAGAAGGCCAA
ACGCCAGAGGCAGGCTCAAAAGTCCAAGCAGAACCGCCTGGGCATGATGC
GCCACATGTTCGTTGTGCTCGATTGCTCTGAGTCCATGAGCGTGCCTGAT
TTGAAACCCACACGACTGCGGTGCACCGTCAAGCTGCTGGAGCTGTTTAT
CGAGGAGTTCTTCGATCAGAACCCCATCAGCCAATTAGGACTCATAGCGC
TAAAAGCTAAGCGAGCGGAGAAGGTGACCGAACTTACCGGCACTTCGCGC
GTGCACCTCAAAGCGCTAGAGAGCTTGGCTAACGTGTCCTTGACCAGCGA
GCCTTCGCTGCAAAATGGCCTAGATCTGGCCCTAAAATCGCTTAAGGTGG
TGCCGTCGCACGCCTCCCGAGAGATCGTCATTATCATGGGCTCGCTCACC
ACATGTGATCCTGTCGATATTAACCTCACCATCGACGAGTTAAAAAAGGA
GGGCATACGCTGCTCGGTTATTTCCCTGTCCGCTGAGATTCACGTGGCCC
GCTACCTCACTCAGCAAACAATGGGCACCTTCGGGGCTGTTTTGGATGAT
GCACATTTTCGGGATCAACTCATGTCTCAGGTAGATCCACCGCCCGCCGC
TAAGACTCAGCACAACTCGCTTATTCGCATGGGCTTCCCGCACACAAAGA
ATGAAGTTGAGGGCAAGGACGCGCCATTGTCCATGTGCATGTGCCACATA
GAGAACTTGGAGGAGCCCAGTGAACTGACCACTACTGGCCACCACTGCCC
GCAATGCAACAGCAAGTACTGCGAGCTGCCCGTGGAGTGCCAGTCTTGCG
GCCTCACCCTGGTCTCCGCGCCGCACTTGGCGCGTTCCTACCACCACCTT
TTCCCGGTGCCAAATTTTGAGGAACTGCCGTTTGAGGCGATGCCTGCTTC
GTCATCCGACCTCACCAGCGATGTCAGGGAATGTTACGGCTGCGCCAAAG
CTCTTGGGCAAGGCGTTGACAAGGTCGCCGATAAAGTCGTCTTCAGATGC
GGTTTCTGCAAGCAGTTCTTCTGCGTTGACTGCGACATCTTCATTCACGA
CACATTGCACGCCTGCGTGGGATGCAACACCATTCCCGGCGTAGACGGTC
TGGTTTACCAGCAAAGTTCCAAGTCTGACCAGGTTGATGCACACCCAGGG
CCCTCAAAGCAGCGCGGCCAGTGTGGGATGGCAAGCTTTCTAGACCAT

BO07542.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl1-RB 1317 CG11115-PB 1..1314 17..1330 6570 100 Plus
Ssl1-RA 1317 CG11115-PA 1..1314 17..1330 6570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl1-RB 1613 CG11115-RB 121..1434 17..1330 6570 100 Plus
Ssl1-RA 1713 CG11115-RA 221..1534 17..1330 6570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22879876..22880784 422..1330 4545 100 Plus
3L 28110227 3L 22879483..22879825 81..423 1715 100 Plus
3L 28110227 3L 22879366..22879431 17..82 330 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:25:05 has no hits.

BO07542.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:50 Download gff for BO07542.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 1..1317 17..1334 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:43 Download gff for BO07542.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 218..1548 10..1342 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:30 Download gff for BO07542.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 221..1534 17..1332 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:50 Download gff for BO07542.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 218..1548 10..1342 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:44 Download gff for BO07542.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl1-RA 221..1534 17..1332 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:44 Download gff for BO07542.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22879366..22879430 17..81 100 -> Plus
3L 22879484..22879825 82..423 100 -> Plus
3L 22879878..22880784 424..1332 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:30 Download gff for BO07542.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22872466..22872530 17..81 100 -> Plus
arm_3L 22872584..22872925 82..423 100 -> Plus
arm_3L 22872978..22873884 424..1332 99   Plus

BO07542.pep Sequence

Translation from 16 to 1348

> BO07542.pep
MADDEQEDQKEYRWETGYEKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQA
QKSKQNRLGMMRHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFD
QNPISQLGLIALKAKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQN
GLDLALKSLKVVPSHASREIVIIMGSLTTCDPVDINLTIDELKKEGIRCS
VISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPAAKTQHN
SLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSK
YCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDLT
SDVRECYGCAKALGQGVDKVADKVVFRCGFCKQFFCVDCDIFIHDTLHAC
VGCNTIPGVDGLVYQQSSKSDQVDAHPGPSKQRGQCGMASFLDH

BO07542.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl1-PB 438 CG11115-PB 1..438 1..438 2315 100 Plus
Ssl1-PA 438 CG11115-PA 1..438 1..438 2315 100 Plus