Clone Sequence Records
BO07542.3prime Sequence
917 bp (861 high quality bases) assembled on 2006-01-06
> BO07542.3prime
ATGGTCTAGAAAGCTTGCCATCCCACACTGGCCGCGCTGCTTTGAGGGCC
CTGGGTGTGCATCAACCTGGTCAGACTTGGAACTTTGCTGGTAAACCAGA
CCGTCTACGCCGGGAATGGTGTTGCATCCCACGCAGGCGTGCAATGTGTC
GTGAATGAAGATGTCGCAGTCAACGCAGAAGAACTGCTTGCAGAAACCGC
ATCTGAAGACGACTTTATCGGCGACCTTGTCAACGCCTTGCCCAAGAGCT
TTGGCGCAGCCGTAACATTCCCTGACATCGCTGGTGAGGTCGGATGACGA
AGCAGGCATCGCCTCAAACGGCAGTTCCTCAAAATTTGGCACCGGGAAAA
GGTGGTGGTAGGAACGCGCCAAGTGCGGCGCGGAGACCAGGGTGAGGCCG
CAAGACTGGCACTCCACGGGCAGCTCGCAGTACTTGCTGTTGCATTGCGG
GCAGTGGTGGCCAGTAGTGGTCAGTTCACTGGGCTCCTCCAAGTTCTCTA
TGTGGCACATGCACATGGACAATGGCGCGTCCTTGCCCTCAACTTCATTC
TTTGTGTGCGGGAAGCCCATGCGAATAAGCGAGTTGTGCTGAGTCTTAGC
GGCGGGCGGTGGATCTACCTGAGACATGAGTTGATCCCGAAAATGTGCAT
CATCCAAAACAGCCCCGAAGGTGCCCATTGTTTGCTGAGTGAGGTAGCGG
GCCACGTGAATCTCAGCGGACAGGGAAATAACCGAGCAGCGTATGCCCTC
CTTTTTTAACTCGTCGATGGTGAGGTTAATATCGACAGGATCACATGTGG
TGAGCGAGCCCATGATAATGACGATCTCTCGGGAGGCGTGCGACGGCACC
ACCTTAAGCGATTTTAGGGCCAGATCTANGCCATTTTGCAGCGAAGGCTC
GCTGGTCAAGGACACGT
BO07542.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11115-PA | 1317 | Ssl1-RA | 416..1314 | 917..19 | 4476 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:31:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssl1-RB | 1613 | CG11115-RB | 536..1434 | 917..19 | 4484 | 99.9 | Minus |
Ssl1-RA | 1713 | CG11115-RA | 636..1534 | 917..19 | 4484 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22879886..22880784 | 917..19 | 4484 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:31:34 has no hits.
BO07542.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:48 Download gff for
BO07542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-PA | 416..1317 | 15..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:20 Download gff for
BO07542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11115-PA | 416..1317 | 15..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:02 Download gff for
BO07542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 636..1548 | 7..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:34 Download gff for
BO07542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 636..1548 | 7..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:34 Download gff for
BO07542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22879886..22880798 | 7..917 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:02 Download gff for
BO07542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22872986..22873898 | 7..917 | 99 | | Minus |
BO07542.5prime Sequence
905 bp (857 high quality bases) assembled on 2006-01-06
> BO07542.5prime
GAAGTTATCAGTCGACATGGCCGACGATGAGCAAGAGGACCAGAAGGAGT
ACCGCTGGGAAACGGGCTATGAAAAGACATGGGAGGCCATCAAGGACGAC
GAGGATGGGATGCTGGATGGAGCCATTGCAGAGATCATTCAGAAGGCCAA
ACGCCAGAGGCAGGCTCAAAAGTCCAAGCAGAACCGCCTGGGCATGATGC
GCCACATGTTCGTTGTGCTCGATTGCTCTGAGTCCATGAGCGTGCCTGAT
TTGAAACCCACACGACTGCGGTGCACCGTCAAGCTGCTGGAGCTGTTTAT
CGAGGAGTTCTTCGATCAGAACCCCATCAGCCAATTAGGACTCATAGCGC
TAAAAGCTAAGCGAGCGGAGAAGGTGACCGAACTTACCGGCACTTCGCGC
GTGCACCTCAAAGCGCTAGAGAGCTTGGCTAACGTGTCCTTGACCAGCGA
GCCTTCGCTGCAAAATGGCCTAGATCTGGCCCTAAAATCGCTTAAGGTGG
TGCCGTCGCACGCCTCCCGAGAGATCGTCATTATCATGGGCTCGCTCACC
ACATGTGATCCTGTCGATATTAACCTCACCATCGACGAGTTAAAAAAGGA
GGGCATACGCTGCTCGGTTATTTCCCTGTCCGCTGAGATTCACGTGGCCC
GCTACCTCACTCAGCAAACAATGGGCACCTTCGGGGCTGTTTTGGATGAT
GCACATTTTCGGGATCAACTCATGTCTCAGGTAGATCCACCGCCCGCCGC
TAAGACTCAGCACAACTCGCTTATTCGCATGGGCTTCCCGCACACAAAGA
ATGAAGTTGAGGGCAAGGACGCGCCATTGTCCATGTGCATGTGCCACATA
GAGAACTTGGAGGAGCCCAGTGAACTGACCACTACTGGCCCACACTGCCC
GCAAT
BO07542.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11115-PA | 1317 | Ssl1-RA | 1..889 | 17..905 | 4395 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssl1-RB | 1613 | CG11115-RB | 121..1009 | 17..905 | 4415 | 99.8 | Plus |
Ssl1-RA | 1713 | CG11115-RA | 221..1109 | 17..905 | 4415 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22879876..22880359 | 422..905 | 2390 | 99.6 | Plus |
3L | 28110227 | 3L | 22879483..22879825 | 81..423 | 1715 | 100 | Plus |
3L | 28110227 | 3L | 22879366..22879431 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:37:26 has no hits.
BO07542.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:49 Download gff for
BO07542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:22 Download gff for
BO07542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11115-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:09:34 Download gff for
BO07542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 218..1109 | 10..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:37 Download gff for
BO07542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 218..1109 | 10..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:37 Download gff for
BO07542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22879363..22879430 | 10..81 | 94 | -> | Plus |
3L | 22879484..22879825 | 82..423 | 100 | -> | Plus |
3L | 22879878..22880359 | 424..905 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:09:34 Download gff for
BO07542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22872463..22872530 | 10..81 | 94 | -> | Plus |
arm_3L | 22872584..22872925 | 82..423 | 100 | -> | Plus |
arm_3L | 22872978..22873459 | 424..905 | 99 | | Plus |
BO07542.complete Sequence
1348 bp (1348 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630833
> BO07542.complete
GAAGTTATCAGTCGACATGGCCGACGATGAGCAAGAGGACCAGAAGGAGT
ACCGCTGGGAAACGGGCTATGAAAAGACATGGGAGGCCATCAAGGACGAC
GAGGATGGGATGCTGGATGGAGCCATTGCAGAGATCATTCAGAAGGCCAA
ACGCCAGAGGCAGGCTCAAAAGTCCAAGCAGAACCGCCTGGGCATGATGC
GCCACATGTTCGTTGTGCTCGATTGCTCTGAGTCCATGAGCGTGCCTGAT
TTGAAACCCACACGACTGCGGTGCACCGTCAAGCTGCTGGAGCTGTTTAT
CGAGGAGTTCTTCGATCAGAACCCCATCAGCCAATTAGGACTCATAGCGC
TAAAAGCTAAGCGAGCGGAGAAGGTGACCGAACTTACCGGCACTTCGCGC
GTGCACCTCAAAGCGCTAGAGAGCTTGGCTAACGTGTCCTTGACCAGCGA
GCCTTCGCTGCAAAATGGCCTAGATCTGGCCCTAAAATCGCTTAAGGTGG
TGCCGTCGCACGCCTCCCGAGAGATCGTCATTATCATGGGCTCGCTCACC
ACATGTGATCCTGTCGATATTAACCTCACCATCGACGAGTTAAAAAAGGA
GGGCATACGCTGCTCGGTTATTTCCCTGTCCGCTGAGATTCACGTGGCCC
GCTACCTCACTCAGCAAACAATGGGCACCTTCGGGGCTGTTTTGGATGAT
GCACATTTTCGGGATCAACTCATGTCTCAGGTAGATCCACCGCCCGCCGC
TAAGACTCAGCACAACTCGCTTATTCGCATGGGCTTCCCGCACACAAAGA
ATGAAGTTGAGGGCAAGGACGCGCCATTGTCCATGTGCATGTGCCACATA
GAGAACTTGGAGGAGCCCAGTGAACTGACCACTACTGGCCACCACTGCCC
GCAATGCAACAGCAAGTACTGCGAGCTGCCCGTGGAGTGCCAGTCTTGCG
GCCTCACCCTGGTCTCCGCGCCGCACTTGGCGCGTTCCTACCACCACCTT
TTCCCGGTGCCAAATTTTGAGGAACTGCCGTTTGAGGCGATGCCTGCTTC
GTCATCCGACCTCACCAGCGATGTCAGGGAATGTTACGGCTGCGCCAAAG
CTCTTGGGCAAGGCGTTGACAAGGTCGCCGATAAAGTCGTCTTCAGATGC
GGTTTCTGCAAGCAGTTCTTCTGCGTTGACTGCGACATCTTCATTCACGA
CACATTGCACGCCTGCGTGGGATGCAACACCATTCCCGGCGTAGACGGTC
TGGTTTACCAGCAAAGTTCCAAGTCTGACCAGGTTGATGCACACCCAGGG
CCCTCAAAGCAGCGCGGCCAGTGTGGGATGGCAAGCTTTCTAGACCAT
BO07542.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssl1-RB | 1317 | CG11115-PB | 1..1314 | 17..1330 | 6570 | 100 | Plus |
Ssl1-RA | 1317 | CG11115-PA | 1..1314 | 17..1330 | 6570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssl1-RB | 1613 | CG11115-RB | 121..1434 | 17..1330 | 6570 | 100 | Plus |
Ssl1-RA | 1713 | CG11115-RA | 221..1534 | 17..1330 | 6570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22879876..22880784 | 422..1330 | 4545 | 100 | Plus |
3L | 28110227 | 3L | 22879483..22879825 | 81..423 | 1715 | 100 | Plus |
3L | 28110227 | 3L | 22879366..22879431 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:25:05 has no hits.
BO07542.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:50 Download gff for
BO07542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 1..1317 | 17..1334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:43 Download gff for
BO07542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 218..1548 | 10..1342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:30 Download gff for
BO07542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 221..1534 | 17..1332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:50 Download gff for
BO07542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 218..1548 | 10..1342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:44 Download gff for
BO07542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssl1-RA | 221..1534 | 17..1332 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:44 Download gff for
BO07542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22879366..22879430 | 17..81 | 100 | -> | Plus |
3L | 22879484..22879825 | 82..423 | 100 | -> | Plus |
3L | 22879878..22880784 | 424..1332 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:30 Download gff for
BO07542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22872466..22872530 | 17..81 | 100 | -> | Plus |
arm_3L | 22872584..22872925 | 82..423 | 100 | -> | Plus |
arm_3L | 22872978..22873884 | 424..1332 | 99 | | Plus |
BO07542.pep Sequence
Translation from 16 to 1348
> BO07542.pep
MADDEQEDQKEYRWETGYEKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQA
QKSKQNRLGMMRHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFD
QNPISQLGLIALKAKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQN
GLDLALKSLKVVPSHASREIVIIMGSLTTCDPVDINLTIDELKKEGIRCS
VISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPAAKTQHN
SLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSK
YCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDLT
SDVRECYGCAKALGQGVDKVADKVVFRCGFCKQFFCVDCDIFIHDTLHAC
VGCNTIPGVDGLVYQQSSKSDQVDAHPGPSKQRGQCGMASFLDH
BO07542.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssl1-PB | 438 | CG11115-PB | 1..438 | 1..438 | 2315 | 100 | Plus |
Ssl1-PA | 438 | CG11115-PA | 1..438 | 1..438 | 2315 | 100 | Plus |