Clone BO07546 Report

Search the DGRC for BO07546

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG2183-RA
Protein status:BO07546.pep: validated full length
Sequenced Size:1417

Clone Sequence Records

BO07546.3prime Sequence

914 bp (851 high quality bases) assembled on 2006-01-06

> BO07546.3prime
ATGGTCTAGAAAGCTTGCTGAGAACCACTTGCACTTGAGGCAAATGAAAA
CTGAGATTCCAAGTATAATGGTGGTGTACTTGAAGTAGCTGCGCACCTTT
TTGCGTTTTCGCTCTGCGAGTATTTCGTTGAAGTCAATGAACAAGGGATT
CTGAGAGGGGCTAAAGGAACCAAGATATTTGACTGTCTTTGTGATTTGGT
TGAGTACATCTCGATAGCCCTGAAGGTTGCTTTTCATCGCAGCCACCTGC
ATCTCCGAAGGTTGCCCCATTTTATTGTGCTCCTGGTTTTTGAGGATGAA
GCGCAGGGAGGCCTGAATAATGACCAAGTGTTGCAGATGACTTGCGGTGA
TCAGTAGGATCTCATAGAAGTTGTTCATCTCATCCTTTTTGACCCGAGCT
ATCGACGAGTTGCTCCAATGATGAAGATGAAAGTCAAGAATGCCCGTCAG
TATCTTGTGACGGAAGATGGGATACTCGATGCCGATCTCGCGAAGTGACT
GCTCATCCATGACGAGGAAATCTGCCAGCGAGATCCTCGCAATGGCAAAG
TATTGAACCATGTTGCCAATATTGATGGCCTCCAGTATGCCGTTAAGTTC
TTGAAAATATTCCGGGCAATCGCTCTTAAGGAAGATGCGTGGAATGTGAT
CCCTTAGCGTGTTGTAGCCCAGGAAGTGCGTCGGCACTAGGTAAGTGGAG
GCTGGTCGCGGCAGGATCTCCAGCAGGTCGTAGTATCCATGGCACTCCGC
CACCTGGGTGGGCGTGTAGCCTTTGTTGTTGGCTATCGTGGCATTCGCGC
CCGCCTCCACCAACAGCTTGACCACTTCCACGTGATTTTTCTCGATGGCA
TGAAAGATGGCAGTGCAGCCCTGATTATCACAGCATCGAAACTAGCATCC
TTAATAAGCAGACG

BO07546.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2183-PA 1386 CG2183-RA 523..1383 879..19 4305 100 Minus
CG2183-PA 1386 CG2183-RA 487..522 914..879 180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
Gasz-RA 1908 CG2183-RA 582..1478 914..19 4460 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8168592..8169073 914..434 2360 99.8 Minus
2R 25286936 2R 8169245..8169440 370..175 980 100 Minus
2R 25286936 2R 8169504..8169659 174..19 780 100 Minus
2R 25286936 2R 8169129..8169191 433..371 315 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:04:48 has no hits.

BO07546.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:57 Download gff for BO07546.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2183-PA 487..1386 18..914 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:30 Download gff for BO07546.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2183-PA 487..1386 18..914 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:06:27 Download gff for BO07546.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2183-RA 582..1478 19..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:38:26 Download gff for BO07546.3prime
Subject Subject Range Query Range Percent Splice Strand
Gasz-RA 582..1478 19..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:38:26 Download gff for BO07546.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8169245..8169440 175..370 100 -> Minus
2R 8169504..8169659 19..174 100   Minus
2R 8168592..8169073 434..914 99 -> Minus
2R 8169129..8169191 371..433 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:06:27 Download gff for BO07546.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4056097..4056578 434..914 99 -> Minus
arm_2R 4056634..4056696 371..433 100 -> Minus
arm_2R 4056750..4056945 175..370 100 -> Minus
arm_2R 4057009..4057164 19..174 100   Minus

BO07546.5prime Sequence

841 bp (833 high quality bases) assembled on 2006-01-06

> BO07546.5prime
GAAGTTATCAGTCGACATGATGAGCAACCTTTGCAAATACGGACCGCCCC
CAGATTCCGACTCTGATAGCAGCTACGATGGATTCTACTTCTCGGATAAG
GTGAAACGCTCGAAACCAGCTCCTTACGTGGATCCCGAGCAAAAGCTCTA
CGATGCAGTCGTCGCTGGGGATCTCAAGACGATGCAGGAGGAGATGCGCA
AACTCGTCCTCCAAGTGGATCAGCCAGTAAAAGGTGGTCTTAACTTACTG
ATGCTCGCCTGTCGCGAGGGCCACTACAAAATAGTTGAATGGCTGCTGGA
AAGGGCAGGGGCCAACGTGAATCGGCAGCTGGATTCCTTGATGCCGCTGA
TGATGGCCTGCAATACCACCCACAAGGATCCGTGCCTGGCGGAGAGAATT
GTGGGCCTGCTCTTGCGGCACGGAGCCGTGATCAATGTTTCGGAAAAATA
TGGAATGACACCCTTTATGTTCGCCTGCCAAAATGGCTTTGCCGGCGTTG
TGCGTCTGCTTATTAAGGATGCTAGTTTCGATGCTGTGGATAATCAGGGC
TGCACTGCCATCTTTCATGCCATCGAGAAAAATCACGTGGAAGTGGTCAA
GCTGTTGGTGGAGGCGGGCGCGAATGCCACGATAGCCAACAACAAAGGCT
ACACGCCCACCCAGGTGGCGGAGTGCCATGGATACTACGACCTGCTGGAG
ATCCTGCCGCGACCAGCCTCCACTTACCTAGTGCCGACGCACTTCCTGGG
CTACAACACGCTAAGGGATCACATTCCACGCATCTTCCTTAAGAGCGATT
GCCCGGAAATATTTTCAGAACTTAACGGCATACTGGAGGCC

BO07546.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2183-PA 1386 CG2183-RA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
Gasz-RA 1908 CG2183-RA 96..920 17..841 4080 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8168188..8168930 99..841 3640 99.3 Plus
2R 25286936 2R 8168043..8168128 17..102 430 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:39:26 has no hits.

BO07546.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:57 Download gff for BO07546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2183-PA 1..825 17..841 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:32 Download gff for BO07546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2183-PA 1..825 17..841 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:07:03 Download gff for BO07546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2183-RA 96..920 17..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:18 Download gff for BO07546.5prime
Subject Subject Range Query Range Percent Splice Strand
Gasz-RA 96..920 17..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:18 Download gff for BO07546.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8168043..8168126 17..100 100 -> Plus
2R 8168190..8168930 101..841 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:07:03 Download gff for BO07546.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4055548..4055631 17..100 100 -> Plus
arm_2R 4055695..4056435 101..841 99   Plus

BO07546.complete Sequence

1417 bp (1417 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630834

> BO07546.complete
GAAGTTATCAGTCGACATGATGAGCAACCTTTGCAAATACGGACCGCCCC
CAGATTCCGACTCTGATAGCAGCTACGATGGATTCTACTTCTCGGATAAG
GTGAAACGCTCGAAACCAGCTCCTTACGTGGATCCCGAGCAAAAGCTCTA
CGATGCAGTCGTCGCTGGGGATCTCAAGACGATGCAGGAGGAGATGCGCA
AACTCGTCCTCCAAGTGGATCAGCCAGTAAAAGGTGGTCTTAACTTACTG
ATGCTCGCCTGTCGCGAGGGCCACTACAAAATAGTTGAATGGCTGCTGGA
AAGGGCAGGGGCCAACGTGAATCGGCAGCTGGATTCCTTGATGCCGCTGA
TGATGGCCTGCAATACCACCCACAAGGATCCGTGCCTGGCGGAGAGAATT
GTGGGCCTGCTCTTGCGGCACGGAGCCGTGATCAATGTTTCGGAAAAATA
TGGAATGACACCCTTTATGTTCGCCTGCCAAAATGGCTTTGCCGGCGTTG
TGCGTCTGCTTATTAAGGATGCTAGTTTCGATGCTGTGGATAATCAGGGC
TGCACTGCCATCTTTCATGCCATCGAGAAAAATCACGTGGAAGTGGTCAA
GCTGTTGGTGGAGGCGGGCGCGAATGCCACGATAGCCAACAACAAAGGCT
ACACGCCCACCCAGGTGGCGGAGTGCCATGGATACTACGACCTGCTGGAG
ATCCTGCCGCGACCAGCCTCCACTTACCTAGTGCCGACGCACTTCCTGGG
CTACAACACGCTAAGGGATCACATTCCACGCATCTTCCTTAAGAGCGATT
GCCCGGAATATTTTCAAGAACTTAACGGCATACTGGAGGCCATCAATATT
GGCAACATGGTTCAATACTTTGCCATTGCGAGGATCTCGCTGGCAGATTT
CCTCGTCATGGATGAGCAGTCACTTCGCGAGATCGGCATCGAGTATCCCA
TCTTCCGTCACAAGATACTGACGGGCATTCTTGACTTTCATCTTCATCAT
TGGAGCAACTCGTCGATAGCTCGGGTCAAAAAGGATGAGATGAACAACTT
CTATGAGATCCTACTGATCACCGCAAGTCATCTGCAACACTTGGTCATTA
TTCAGGCCTCCCTGCGCTTCATCCTCAAAAACCAGGAGCACAATAAAATG
GGGCAACCTTCGGAGATGCAGGTGGCTGCGATGAAAAGCAACCTTCAGGG
CTATCGAGATGTACTCAACCAAATCACAAAGACAGTCAAATATCTTGGTT
CCTTTAGCCCCTCTCAGAATCCCTTGTTCATTGACTTCAACGAAATACTC
GCAGAGCGAAAACGCAAAAAGGTGCGCAGCTACTTCAAGTACACCACCAT
TATACTTGGAATCTCAGTTTTCATTTGCCTCAAGTGCAAGTGGTTCTCAG
CAAGCTTTCTAGACCAT

BO07546.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
Gasz-RA 1386 CG2183-PA 1..1383 17..1399 6915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Gasz-RA 1908 CG2183-RA 96..1478 17..1399 6915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8168188..8169073 99..984 4430 100 Plus
2R 25286936 2R 8169245..8169440 1048..1243 980 100 Plus
2R 25286936 2R 8169504..8169659 1244..1399 780 100 Plus
2R 25286936 2R 8168043..8168128 17..102 430 100 Plus
2R 25286936 2R 8169129..8169191 985..1047 315 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:45:06 has no hits.

BO07546.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:52 Download gff for BO07546.complete
Subject Subject Range Query Range Percent Splice Strand
CG2183-RA 1..1386 17..1400 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:45 Download gff for BO07546.complete
Subject Subject Range Query Range Percent Splice Strand
CG2183-RA 97..1479 17..1399 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:50 Download gff for BO07546.complete
Subject Subject Range Query Range Percent Splice Strand
CG2183-RA 96..1478 17..1401 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:52 Download gff for BO07546.complete
Subject Subject Range Query Range Percent Splice Strand
CG2183-RA 97..1479 17..1399 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:01 Download gff for BO07546.complete
Subject Subject Range Query Range Percent Splice Strand
Gasz-RA 96..1478 17..1401 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:01 Download gff for BO07546.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8168043..8168126 17..100 100 -> Plus
2R 8168190..8169073 101..984 100 -> Plus
2R 8169129..8169191 985..1047 100 -> Plus
2R 8169245..8169440 1048..1243 100 -> Plus
2R 8169504..8169659 1244..1401 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:50 Download gff for BO07546.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4055548..4055631 17..100 100 -> Plus
arm_2R 4055695..4056578 101..984 100 -> Plus
arm_2R 4056634..4056696 985..1047 100 -> Plus
arm_2R 4056750..4056945 1048..1243 100 -> Plus
arm_2R 4057009..4057164 1244..1401 98   Plus

BO07546.pep Sequence

Translation from 16 to 1417

> BO07546.pep
MMSNLCKYGPPPDSDSDSSYDGFYFSDKVKRSKPAPYVDPEQKLYDAVVA
GDLKTMQEEMRKLVLQVDQPVKGGLNLLMLACREGHYKIVEWLLERAGAN
VNRQLDSLMPLMMACNTTHKDPCLAERIVGLLLRHGAVINVSEKYGMTPF
MFACQNGFAGVVRLLIKDASFDAVDNQGCTAIFHAIEKNHVEVVKLLVEA
GANATIANNKGYTPTQVAECHGYYDLLEILPRPASTYLVPTHFLGYNTLR
DHIPRIFLKSDCPEYFQELNGILEAINIGNMVQYFAIARISLADFLVMDE
QSLREIGIEYPIFRHKILTGILDFHLHHWSNSSIARVKKDEMNNFYEILL
ITASHLQHLVIIQASLRFILKNQEHNKMGQPSEMQVAAMKSNLQGYRDVL
NQITKTVKYLGSFSPSQNPLFIDFNEILAERKRKKVRSYFKYTTIILGIS
VFICLKCKWFSASFLDH

BO07546.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Gasz-PA 461 CG2183-PA 1..461 1..461 2412 100 Plus
mask-PF 3623 CG33106-PF 207..360 74..230 203 36 Plus
mask-PD 3636 CG33106-PD 220..373 74..230 203 36 Plus
mask-PE 4000 CG33106-PE 585..738 74..230 203 36 Plus
mask-PB 4001 CG33106-PB 585..738 74..230 203 36 Plus
mask-PF 3623 CG33106-PF 218..426 22..230 171 30.8 Plus
mask-PD 3636 CG33106-PD 231..439 22..230 171 30.8 Plus
mask-PE 4000 CG33106-PE 596..804 22..230 171 30.8 Plus
mask-PF 3623 CG33106-PF 2068..2224 72..230 167 31.7 Plus
mask-PD 3636 CG33106-PD 2081..2237 72..230 167 31.7 Plus
mask-PE 4000 CG33106-PE 2445..2601 72..230 167 31.7 Plus
mask-PF 3623 CG33106-PF 1939..2089 78..230 157 31 Plus
mask-PD 3636 CG33106-PD 1952..2102 78..230 157 31 Plus
mask-PE 4000 CG33106-PE 2316..2466 78..230 157 31 Plus