Clone Sequence Records
BO07546.3prime Sequence
914 bp (851 high quality bases) assembled on 2006-01-06
> BO07546.3prime
ATGGTCTAGAAAGCTTGCTGAGAACCACTTGCACTTGAGGCAAATGAAAA
CTGAGATTCCAAGTATAATGGTGGTGTACTTGAAGTAGCTGCGCACCTTT
TTGCGTTTTCGCTCTGCGAGTATTTCGTTGAAGTCAATGAACAAGGGATT
CTGAGAGGGGCTAAAGGAACCAAGATATTTGACTGTCTTTGTGATTTGGT
TGAGTACATCTCGATAGCCCTGAAGGTTGCTTTTCATCGCAGCCACCTGC
ATCTCCGAAGGTTGCCCCATTTTATTGTGCTCCTGGTTTTTGAGGATGAA
GCGCAGGGAGGCCTGAATAATGACCAAGTGTTGCAGATGACTTGCGGTGA
TCAGTAGGATCTCATAGAAGTTGTTCATCTCATCCTTTTTGACCCGAGCT
ATCGACGAGTTGCTCCAATGATGAAGATGAAAGTCAAGAATGCCCGTCAG
TATCTTGTGACGGAAGATGGGATACTCGATGCCGATCTCGCGAAGTGACT
GCTCATCCATGACGAGGAAATCTGCCAGCGAGATCCTCGCAATGGCAAAG
TATTGAACCATGTTGCCAATATTGATGGCCTCCAGTATGCCGTTAAGTTC
TTGAAAATATTCCGGGCAATCGCTCTTAAGGAAGATGCGTGGAATGTGAT
CCCTTAGCGTGTTGTAGCCCAGGAAGTGCGTCGGCACTAGGTAAGTGGAG
GCTGGTCGCGGCAGGATCTCCAGCAGGTCGTAGTATCCATGGCACTCCGC
CACCTGGGTGGGCGTGTAGCCTTTGTTGTTGGCTATCGTGGCATTCGCGC
CCGCCTCCACCAACAGCTTGACCACTTCCACGTGATTTTTCTCGATGGCA
TGAAAGATGGCAGTGCAGCCCTGATTATCACAGCATCGAAACTAGCATCC
TTAATAAGCAGACG
BO07546.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2183-PA | 1386 | CG2183-RA | 523..1383 | 879..19 | 4305 | 100 | Minus |
CG2183-PA | 1386 | CG2183-RA | 487..522 | 914..879 | 180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:04:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasz-RA | 1908 | CG2183-RA | 582..1478 | 914..19 | 4460 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:04:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8168592..8169073 | 914..434 | 2360 | 99.8 | Minus |
2R | 25286936 | 2R | 8169245..8169440 | 370..175 | 980 | 100 | Minus |
2R | 25286936 | 2R | 8169504..8169659 | 174..19 | 780 | 100 | Minus |
2R | 25286936 | 2R | 8169129..8169191 | 433..371 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:04:48 has no hits.
BO07546.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:57 Download gff for
BO07546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-PA | 487..1386 | 18..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:30 Download gff for
BO07546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-PA | 487..1386 | 18..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:06:27 Download gff for
BO07546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-RA | 582..1478 | 19..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:38:26 Download gff for
BO07546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasz-RA | 582..1478 | 19..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:38:26 Download gff for
BO07546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8169245..8169440 | 175..370 | 100 | -> | Minus |
2R | 8169504..8169659 | 19..174 | 100 | | Minus |
2R | 8168592..8169073 | 434..914 | 99 | -> | Minus |
2R | 8169129..8169191 | 371..433 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:06:27 Download gff for
BO07546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4056097..4056578 | 434..914 | 99 | -> | Minus |
arm_2R | 4056634..4056696 | 371..433 | 100 | -> | Minus |
arm_2R | 4056750..4056945 | 175..370 | 100 | -> | Minus |
arm_2R | 4057009..4057164 | 19..174 | 100 | | Minus |
BO07546.5prime Sequence
841 bp (833 high quality bases) assembled on 2006-01-06
> BO07546.5prime
GAAGTTATCAGTCGACATGATGAGCAACCTTTGCAAATACGGACCGCCCC
CAGATTCCGACTCTGATAGCAGCTACGATGGATTCTACTTCTCGGATAAG
GTGAAACGCTCGAAACCAGCTCCTTACGTGGATCCCGAGCAAAAGCTCTA
CGATGCAGTCGTCGCTGGGGATCTCAAGACGATGCAGGAGGAGATGCGCA
AACTCGTCCTCCAAGTGGATCAGCCAGTAAAAGGTGGTCTTAACTTACTG
ATGCTCGCCTGTCGCGAGGGCCACTACAAAATAGTTGAATGGCTGCTGGA
AAGGGCAGGGGCCAACGTGAATCGGCAGCTGGATTCCTTGATGCCGCTGA
TGATGGCCTGCAATACCACCCACAAGGATCCGTGCCTGGCGGAGAGAATT
GTGGGCCTGCTCTTGCGGCACGGAGCCGTGATCAATGTTTCGGAAAAATA
TGGAATGACACCCTTTATGTTCGCCTGCCAAAATGGCTTTGCCGGCGTTG
TGCGTCTGCTTATTAAGGATGCTAGTTTCGATGCTGTGGATAATCAGGGC
TGCACTGCCATCTTTCATGCCATCGAGAAAAATCACGTGGAAGTGGTCAA
GCTGTTGGTGGAGGCGGGCGCGAATGCCACGATAGCCAACAACAAAGGCT
ACACGCCCACCCAGGTGGCGGAGTGCCATGGATACTACGACCTGCTGGAG
ATCCTGCCGCGACCAGCCTCCACTTACCTAGTGCCGACGCACTTCCTGGG
CTACAACACGCTAAGGGATCACATTCCACGCATCTTCCTTAAGAGCGATT
GCCCGGAAATATTTTCAGAACTTAACGGCATACTGGAGGCC
BO07546.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2183-PA | 1386 | CG2183-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasz-RA | 1908 | CG2183-RA | 96..920 | 17..841 | 4080 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:39:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8168188..8168930 | 99..841 | 3640 | 99.3 | Plus |
2R | 25286936 | 2R | 8168043..8168128 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:39:26 has no hits.
BO07546.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:21:57 Download gff for
BO07546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:32 Download gff for
BO07546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:07:03 Download gff for
BO07546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-RA | 96..920 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:18 Download gff for
BO07546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasz-RA | 96..920 | 17..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:18 Download gff for
BO07546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8168043..8168126 | 17..100 | 100 | -> | Plus |
2R | 8168190..8168930 | 101..841 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:07:03 Download gff for
BO07546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4055548..4055631 | 17..100 | 100 | -> | Plus |
arm_2R | 4055695..4056435 | 101..841 | 99 | | Plus |
BO07546.complete Sequence
1417 bp (1417 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630834
> BO07546.complete
GAAGTTATCAGTCGACATGATGAGCAACCTTTGCAAATACGGACCGCCCC
CAGATTCCGACTCTGATAGCAGCTACGATGGATTCTACTTCTCGGATAAG
GTGAAACGCTCGAAACCAGCTCCTTACGTGGATCCCGAGCAAAAGCTCTA
CGATGCAGTCGTCGCTGGGGATCTCAAGACGATGCAGGAGGAGATGCGCA
AACTCGTCCTCCAAGTGGATCAGCCAGTAAAAGGTGGTCTTAACTTACTG
ATGCTCGCCTGTCGCGAGGGCCACTACAAAATAGTTGAATGGCTGCTGGA
AAGGGCAGGGGCCAACGTGAATCGGCAGCTGGATTCCTTGATGCCGCTGA
TGATGGCCTGCAATACCACCCACAAGGATCCGTGCCTGGCGGAGAGAATT
GTGGGCCTGCTCTTGCGGCACGGAGCCGTGATCAATGTTTCGGAAAAATA
TGGAATGACACCCTTTATGTTCGCCTGCCAAAATGGCTTTGCCGGCGTTG
TGCGTCTGCTTATTAAGGATGCTAGTTTCGATGCTGTGGATAATCAGGGC
TGCACTGCCATCTTTCATGCCATCGAGAAAAATCACGTGGAAGTGGTCAA
GCTGTTGGTGGAGGCGGGCGCGAATGCCACGATAGCCAACAACAAAGGCT
ACACGCCCACCCAGGTGGCGGAGTGCCATGGATACTACGACCTGCTGGAG
ATCCTGCCGCGACCAGCCTCCACTTACCTAGTGCCGACGCACTTCCTGGG
CTACAACACGCTAAGGGATCACATTCCACGCATCTTCCTTAAGAGCGATT
GCCCGGAATATTTTCAAGAACTTAACGGCATACTGGAGGCCATCAATATT
GGCAACATGGTTCAATACTTTGCCATTGCGAGGATCTCGCTGGCAGATTT
CCTCGTCATGGATGAGCAGTCACTTCGCGAGATCGGCATCGAGTATCCCA
TCTTCCGTCACAAGATACTGACGGGCATTCTTGACTTTCATCTTCATCAT
TGGAGCAACTCGTCGATAGCTCGGGTCAAAAAGGATGAGATGAACAACTT
CTATGAGATCCTACTGATCACCGCAAGTCATCTGCAACACTTGGTCATTA
TTCAGGCCTCCCTGCGCTTCATCCTCAAAAACCAGGAGCACAATAAAATG
GGGCAACCTTCGGAGATGCAGGTGGCTGCGATGAAAAGCAACCTTCAGGG
CTATCGAGATGTACTCAACCAAATCACAAAGACAGTCAAATATCTTGGTT
CCTTTAGCCCCTCTCAGAATCCCTTGTTCATTGACTTCAACGAAATACTC
GCAGAGCGAAAACGCAAAAAGGTGCGCAGCTACTTCAAGTACACCACCAT
TATACTTGGAATCTCAGTTTTCATTTGCCTCAAGTGCAAGTGGTTCTCAG
CAAGCTTTCTAGACCAT
BO07546.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasz-RA | 1386 | CG2183-PA | 1..1383 | 17..1399 | 6915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasz-RA | 1908 | CG2183-RA | 96..1478 | 17..1399 | 6915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8168188..8169073 | 99..984 | 4430 | 100 | Plus |
2R | 25286936 | 2R | 8169245..8169440 | 1048..1243 | 980 | 100 | Plus |
2R | 25286936 | 2R | 8169504..8169659 | 1244..1399 | 780 | 100 | Plus |
2R | 25286936 | 2R | 8168043..8168128 | 17..102 | 430 | 100 | Plus |
2R | 25286936 | 2R | 8169129..8169191 | 985..1047 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:45:06 has no hits.
BO07546.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:52 Download gff for
BO07546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-RA | 1..1386 | 17..1400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:45 Download gff for
BO07546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-RA | 97..1479 | 17..1399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:50 Download gff for
BO07546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-RA | 96..1478 | 17..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:52 Download gff for
BO07546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-RA | 97..1479 | 17..1399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:01 Download gff for
BO07546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasz-RA | 96..1478 | 17..1401 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:01 Download gff for
BO07546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8168043..8168126 | 17..100 | 100 | -> | Plus |
2R | 8168190..8169073 | 101..984 | 100 | -> | Plus |
2R | 8169129..8169191 | 985..1047 | 100 | -> | Plus |
2R | 8169245..8169440 | 1048..1243 | 100 | -> | Plus |
2R | 8169504..8169659 | 1244..1401 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:50 Download gff for
BO07546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4055548..4055631 | 17..100 | 100 | -> | Plus |
arm_2R | 4055695..4056578 | 101..984 | 100 | -> | Plus |
arm_2R | 4056634..4056696 | 985..1047 | 100 | -> | Plus |
arm_2R | 4056750..4056945 | 1048..1243 | 100 | -> | Plus |
arm_2R | 4057009..4057164 | 1244..1401 | 98 | | Plus |
BO07546.pep Sequence
Translation from 16 to 1417
> BO07546.pep
MMSNLCKYGPPPDSDSDSSYDGFYFSDKVKRSKPAPYVDPEQKLYDAVVA
GDLKTMQEEMRKLVLQVDQPVKGGLNLLMLACREGHYKIVEWLLERAGAN
VNRQLDSLMPLMMACNTTHKDPCLAERIVGLLLRHGAVINVSEKYGMTPF
MFACQNGFAGVVRLLIKDASFDAVDNQGCTAIFHAIEKNHVEVVKLLVEA
GANATIANNKGYTPTQVAECHGYYDLLEILPRPASTYLVPTHFLGYNTLR
DHIPRIFLKSDCPEYFQELNGILEAINIGNMVQYFAIARISLADFLVMDE
QSLREIGIEYPIFRHKILTGILDFHLHHWSNSSIARVKKDEMNNFYEILL
ITASHLQHLVIIQASLRFILKNQEHNKMGQPSEMQVAAMKSNLQGYRDVL
NQITKTVKYLGSFSPSQNPLFIDFNEILAERKRKKVRSYFKYTTIILGIS
VFICLKCKWFSASFLDH
BO07546.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasz-PA | 461 | CG2183-PA | 1..461 | 1..461 | 2412 | 100 | Plus |
mask-PF | 3623 | CG33106-PF | 207..360 | 74..230 | 203 | 36 | Plus |
mask-PD | 3636 | CG33106-PD | 220..373 | 74..230 | 203 | 36 | Plus |
mask-PE | 4000 | CG33106-PE | 585..738 | 74..230 | 203 | 36 | Plus |
mask-PB | 4001 | CG33106-PB | 585..738 | 74..230 | 203 | 36 | Plus |
mask-PF | 3623 | CG33106-PF | 218..426 | 22..230 | 171 | 30.8 | Plus |
mask-PD | 3636 | CG33106-PD | 231..439 | 22..230 | 171 | 30.8 | Plus |
mask-PE | 4000 | CG33106-PE | 596..804 | 22..230 | 171 | 30.8 | Plus |
mask-PF | 3623 | CG33106-PF | 2068..2224 | 72..230 | 167 | 31.7 | Plus |
mask-PD | 3636 | CG33106-PD | 2081..2237 | 72..230 | 167 | 31.7 | Plus |
mask-PE | 4000 | CG33106-PE | 2445..2601 | 72..230 | 167 | 31.7 | Plus |
mask-PF | 3623 | CG33106-PF | 1939..2089 | 78..230 | 157 | 31 | Plus |
mask-PD | 3636 | CG33106-PD | 1952..2102 | 78..230 | 157 | 31 | Plus |
mask-PE | 4000 | CG33106-PE | 2316..2466 | 78..230 | 157 | 31 | Plus |