Clone Sequence Records
BO07549.3prime Sequence
923 bp (755 high quality bases) assembled on 2006-01-06
> BO07549.3prime
ATGGTCTAGAAAGCTTGCTTTGAACAAGGAAAGCCTACGTCCCAGCCCGG
TACGTCCTGAACCACTGACCGCGTTGGTGATGTGGCTCATCTCGGGAAGA
TTGTGGATGTCGCCGCGGGCGGCCACAGAAGGCGGCGAGCTCAGGAGACG
TTGAGCAACGCGTTGGATATCGGCGGCAGTTACACTTTCAATTTCCTTGA
TAAAATGCTGCGGTCGTTTTCGCTGCCCCGTCACCAGCACTTGGCGGCCC
ACGTCCTCGAACACAACGGGTCTCGACTCCAGGTTCATTAGTAACATGGA
CTGAAGCTGGATCTTCGAGCGCATTAGCTCTTCACGGCCTGGCTCTGCGG
CCATGCCCATCATCTCGCGGGTCAGGACCTCGACCATGTCGTTCATGTGC
TGTGGCGGTGCGCTACCGTGAACACAGAAGAGACCACAATCGCCGTAAGC
ATGATTGTAGGCCGTGGCGCTGTACATCCAGTGGTAGCGGTTTAGCACCT
TGGTATACAGGCGCGAGTACATGCCCTTGCCAGGACCGCCTGCGGAGAAG
GATCCACCACCGCCCATCATGATATTCAGGACGCACAGGGGAACGAAGTC
CTTGTCCTGGTGGGAACAGCCTTCAAATCCGAGAATTACATGGGCCAGCT
CTGGTAGCCCAGCGGCCGCATAGATTGGGATTTCGCATTGTTCCTTTACT
AATCCGCCAGTGTATTGTGCAATAGACGTATCTACTTGCTTAGGTCCCGA
GTCCTCCAGGGCTTCCGTTTCCCAGATGGCTTTGTCCTCCACAAAGTATC
TTTGCACATGGCTAACCAGCTCATCATGATCCACGCCTACACCAGCGATG
ACCATGCGCTTGGGAGAGTGATGGTACTTAAGGTAGTTCATTAGCACATT
GCGGTTTATGTGGTCCAGGTTCT
BO07549.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8728-PA | 1671 | CG8728-RA | 764..1668 | 923..19 | 4525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8728-RA | 1935 | CG8728-RA | 923..1827 | 923..19 | 4525 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:06:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7937204..7937710 | 189..695 | 2535 | 100 | Plus |
2R | 25286936 | 2R | 7936974..7937144 | 19..189 | 855 | 100 | Plus |
2R | 25286936 | 2R | 7937761..7937902 | 693..834 | 710 | 100 | Plus |
2R | 25286936 | 2R | 7937957..7938047 | 833..923 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:06:21 has no hits.
BO07549.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:02 Download gff for
BO07549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-PA | 764..1671 | 18..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:38 Download gff for
BO07549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-PA | 764..1671 | 18..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:10 Download gff for
BO07549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 923..1831 | 13..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:43 Download gff for
BO07549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 923..1831 | 13..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:43 Download gff for
BO07549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7936970..7937143 | 13..188 | 98 | <- | Plus |
2R | 7937204..7937708 | 189..693 | 100 | <- | Plus |
2R | 7937762..7937902 | 694..834 | 100 | <- | Plus |
2R | 7937959..7938047 | 835..923 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:10 Download gff for
BO07549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3824475..3824648 | 13..188 | 98 | <- | Plus |
arm_2R | 3824709..3825213 | 189..693 | 100 | <- | Plus |
arm_2R | 3825267..3825407 | 694..834 | 100 | <- | Plus |
arm_2R | 3825464..3825552 | 835..923 | 100 | | Plus |
BO07549.5prime Sequence
916 bp (821 high quality bases) assembled on 2006-01-06
> BO07549.5prime
GAAGTTATCAGTCGACATGATGAACGGGCGCAGCATCGGCATGCTGAAAA
AGCTCAGGCACACCTGGCGCACGTTTCCACGCCTTATGGCCACCAAGGTG
ACCAGTCTGGGTGGCGACGAGGTGGGCAGTGGCACAGGAATCGGACAGAT
CACCGGCGGCGTGCGTACAAGTGATGGGCCACAGAAAGTGAACACGCCTT
CCAAGGAGATTGTCACCCACCTGCCACCTCTCACCGAGCCACTGCCCAAC
CTGCCGGAGGCCGTTTACGCAGCTCCACTGGCGGAAAGCGCCATTACAAA
GGTAACGACGCTGCCGAACGGTCTGCGGATTGCCTCGGAACCGCGGTACG
GACAGTTCTGCACTGTGGGCCTGGTTATCGACTCCGGGCCGCGCTACGAA
GTCGCTTACCCCAGCGGCGTGTCGCACTTTCTCGAAAAGCTAGCTTTTAA
TTCCACAGTCAACTTTCCCAACAAGGACGCCATACTTAAGGAGCTGGAGA
AGAACGGAGGCATTTGCGACTGTCAAAGCTCGCGGGACACGCTCATTTAT
GCCGCCAGCATCGACAGCCGGGCTATTGATTCCGTGACGCGTCTGCTGGC
GGACGTCACTTTGCGGCCCACACTTAGCGACCAGGAGGTGAGTCTGGCCA
GGCGGGCCGTCAACTTTGAGCTGGAGACACTGGGCATGCGGCCTGAGCAG
GAGCCAATACTGATGGACATGATCCACGCGGCAGCATTCAGGGACAATAC
CTTGGGCCTGCCCAAGCTATGTCCCCTTGAGAACCTGGACCACATAAACC
GCAATGTGCTAATGAACTACCTTAAGTACCATCACTCTCCCAAGCGCATG
GTCATCGCTGGTGTAGGCGTGGATCATGATGAGCTGGTTAGCCATGTGCA
AAGATACTTTGTGGAG
BO07549.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8728-PA | 1671 | CG8728-RA | 1..900 | 17..916 | 4450 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8728-RA | 1935 | CG8728-RA | 158..1059 | 15..916 | 4480 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7937957..7938375 | 870..452 | 2080 | 99.8 | Minus |
2R | 25286936 | 2R | 7938437..7938819 | 451..69 | 1885 | 99.5 | Minus |
2R | 25286936 | 2R | 7938898..7938957 | 74..15 | 300 | 100 | Minus |
2R | 25286936 | 2R | 7937855..7937902 | 916..869 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:02:17 has no hits.
BO07549.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:03 Download gff for
BO07549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-PA | 1..900 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:39 Download gff for
BO07549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-PA | 1..900 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:45:23 Download gff for
BO07549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 154..1059 | 9..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:00:09 Download gff for
BO07549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 154..1059 | 9..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:00:09 Download gff for
BO07549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7937855..7937902 | 869..916 | 100 | <- | Minus |
2R | 7937959..7938375 | 452..868 | 99 | <- | Minus |
2R | 7938437..7938815 | 73..451 | 99 | <- | Minus |
2R | 7938900..7938961 | 9..72 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:45:23 Download gff for
BO07549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3825360..3825407 | 869..916 | 100 | <- | Minus |
arm_2R | 3825464..3825880 | 452..868 | 99 | <- | Minus |
arm_2R | 3825942..3826320 | 73..451 | 99 | <- | Minus |
arm_2R | 3826405..3826466 | 9..72 | 95 | | Minus |
BO07549.complete Sequence
1702 bp (1702 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ630836
> BO07549.complete
GAAGTTATCAGTCGACATGATGAACGGGCGCAGCATCGGCATGCTGAAAA
AGCTCAGGCACACCTGGCGCACGTTTCCACGCCTTATGGCCACCAAGGTG
ACCAGTCTGGGTGGCGACGAGGTGGGCAGTGGCACAGGAATCGGACAGAT
CACCGGCGGCGTGCGTACAAGTGATGGGCCACAGAAAGTGAACACGCCTT
CCAAGGAGATTGTCACCCACCTGCCACCTCTCACCGAGCCACTGCCCAAC
CTGCCGGAGGCCGTTTACGCAGCTCCACTGGCGGAAAGCGCCATTACAAA
GGTAACGACGCTGCCGAACGGTCTGCGGATTGCCTCGGAACCGCGGTACG
GACAGTTCTGCACTGTGGGCCTGGTTATCGACTCCGGGCCGCGCTACGAA
GTCGCTTACCCCAGCGGCGTGTCGCACTTTCTCGAAAAGCTAGCTTTTAA
TTCCACAGTCAACTTTCCCAACAAGGACGCCATACTTAAGGAGCTGGAGA
AGAACGGAGGCATTTGCGACTGTCAGAGCTCGCGGGACACGCTCATTTAT
GCCGCCAGCATCGACAGCCGGGCTATTGATTCCGTGACGCGTCTGCTGGC
GGACGTCACTTTGCGGCCCACACTTAGCGACCAGGAGGTGAGTCTGGCCA
GGCGGGCCGTCAACTTTGAGCTGGAGACACTGGGCATGCGGCCTGAGCAG
GAGCCAATACTGATGGACATGATCCACGCGGCAGCATTCAGGGACAATAC
CTTGGGCCTGCCCAAGCTATGTCCCCTTGAGAACCTGGACCACATAAACC
GCAATGTGCTAATGAACTACCTTAAGTACCATCACTCTCCCAAGCGCATG
GTCATCGCTGGTGTAGGCGTGGATCATGATGAGCTGGTTAGCCATGTGCA
AAGATACTTTGTGGAGGACAAAGCCATCTGGGAAACGGAAGCCCTGGAGG
ACTCGGGACCTAAGCAAGTAGATACGTCTATTGCACAATACACTGGCGGA
TTAGTAAAGGAACAATGCGAAATCCCAATCTATGCGGCCGCTGGGCTACC
AGAGCTGGCCCATGTAATTCTCGGATTTGAAGGCTGTTCCCACCAGGACA
AGGACTTCGTTCCCCTGTGCGTCCTGAATATCATGATGGGCGGTGGTGGA
TCCTTCTCCGCAGGCGGTCCTGGCAAGGGCATGTACTCGCGCCTGTATAC
CAAGGTGCTAAACCGCTACCACTGGATGTACAGCGCCACGGCCTACAATC
ATGCTTACGGCGATTGTGGTCTCTTCTGTGTTCACGGTAGCGCACCGCCA
CAGCACATGAACGACATGGTCGAGGTCCTGACCCGCGAGATGATGGGCAT
GGCCGCAGAGCCAGGCCGTGAAGAGCTAATGCGCTCGAAGATCCAGCTTC
AGTCCATGTTACTAATGAACCTGGAGTCGAGACCCGTTGTGTTCGAGGAC
GTGGGCCGCCAAGTGCTGGTGACGGGGCAGCGAAAACGACCGCAGCATTT
TATCAAGGAAATTGAAAGTGTAACTGCCGCCGATATCCAACGCGTTGCTC
AACGTCTCCTGAGCTCGCCGCCTTCTGTGGCCGCCCGCGGCGACATCCAC
AATCTTCCCGAGATGAGCCACATCACCAACGCGGTCAGTGGTTCAGGACG
TACCGGGCTGGGACGTAGGCTTTCCTTGTTCAAAGCAAGCTTTCTAGACC
AT
BO07549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8728-RA | 1671 | CG8728-PA | 1..1668 | 17..1684 | 8325 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:43:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8728-RA | 1935 | CG8728-RA | 158..1827 | 15..1684 | 8335 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7937204..7937710 | 1514..1008 | 2535 | 100 | Minus |
2R | 25286936 | 2R | 7937957..7938375 | 870..452 | 2095 | 100 | Minus |
2R | 25286936 | 2R | 7938437..7938819 | 451..69 | 1885 | 99.5 | Minus |
2R | 25286936 | 2R | 7936974..7937144 | 1684..1514 | 855 | 100 | Minus |
2R | 25286936 | 2R | 7937761..7937902 | 1010..869 | 710 | 100 | Minus |
2R | 25286936 | 2R | 7938898..7938957 | 74..15 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:43:39 has no hits.
BO07549.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:11 Download gff for
BO07549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 1..1671 | 17..1685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:30 Download gff for
BO07549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 209..1886 | 9..1690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:38 Download gff for
BO07549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 160..1827 | 17..1686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:11 Download gff for
BO07549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 209..1886 | 9..1690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:23 Download gff for
BO07549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8728-RA | 160..1827 | 17..1686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:23 Download gff for
BO07549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7936970..7937143 | 1515..1686 | 98 | <- | Minus |
2R | 7937204..7937708 | 1010..1514 | 100 | <- | Minus |
2R | 7937762..7937902 | 869..1009 | 100 | <- | Minus |
2R | 7937959..7938375 | 452..868 | 100 | <- | Minus |
2R | 7938437..7938815 | 73..451 | 99 | <- | Minus |
2R | 7938900..7938955 | 17..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:38 Download gff for
BO07549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3824475..3824648 | 1515..1686 | 98 | <- | Minus |
arm_2R | 3824709..3825213 | 1010..1514 | 100 | <- | Minus |
arm_2R | 3825267..3825407 | 869..1009 | 100 | <- | Minus |
arm_2R | 3825464..3825880 | 452..868 | 100 | <- | Minus |
arm_2R | 3825942..3826320 | 73..451 | 99 | <- | Minus |
arm_2R | 3826405..3826460 | 17..72 | 100 | | Minus |
BO07549.pep Sequence
Translation from 16 to 1702
> BO07549.pep
MMNGRSIGMLKKLRHTWRTFPRLMATKVTSLGGDEVGSGTGIGQITGGVR
TSDGPQKVNTPSKEIVTHLPPLTEPLPNLPEAVYAAPLAESAITKVTTLP
NGLRIASEPRYGQFCTVGLVIDSGPRYEVAYPSGVSHFLEKLAFNSTVNF
PNKDAILKELEKNGGICDCQSSRDTLIYAASIDSRAIDSVTRLLADVTLR
PTLSDQEVSLARRAVNFELETLGMRPEQEPILMDMIHAAAFRDNTLGLPK
LCPLENLDHINRNVLMNYLKYHHSPKRMVIAGVGVDHDELVSHVQRYFVE
DKAIWETEALEDSGPKQVDTSIAQYTGGLVKEQCEIPIYAAAGLPELAHV
ILGFEGCSHQDKDFVPLCVLNIMMGGGGSFSAGGPGKGMYSRLYTKVLNR
YHWMYSATAYNHAYGDCGLFCVHGSAPPQHMNDMVEVLTREMMGMAAEPG
REELMRSKIQLQSMLLMNLESRPVVFEDVGRQVLVTGQRKRPQHFIKEIE
SVTAADIQRVAQRLLSSPPSVAARGDIHNLPEMSHITNAVSGSGRTGLGR
RLSLFKASFLDH
BO07549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8728-PA | 556 | CG8728-PA | 1..556 | 1..556 | 2891 | 100 | Plus |
CG3731-PB | 470 | CG3731-PB | 41..465 | 94..540 | 454 | 28.5 | Plus |
CG3731-PA | 470 | CG3731-PA | 41..465 | 94..540 | 454 | 28.5 | Plus |