Clone BO07549 Report

Search the DGRC for BO07549

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG8728-RA
Protein status:BO07549.pep: full length peptide match
Sequenced Size:1702

Clone Sequence Records

BO07549.3prime Sequence

923 bp (755 high quality bases) assembled on 2006-01-06

> BO07549.3prime
ATGGTCTAGAAAGCTTGCTTTGAACAAGGAAAGCCTACGTCCCAGCCCGG
TACGTCCTGAACCACTGACCGCGTTGGTGATGTGGCTCATCTCGGGAAGA
TTGTGGATGTCGCCGCGGGCGGCCACAGAAGGCGGCGAGCTCAGGAGACG
TTGAGCAACGCGTTGGATATCGGCGGCAGTTACACTTTCAATTTCCTTGA
TAAAATGCTGCGGTCGTTTTCGCTGCCCCGTCACCAGCACTTGGCGGCCC
ACGTCCTCGAACACAACGGGTCTCGACTCCAGGTTCATTAGTAACATGGA
CTGAAGCTGGATCTTCGAGCGCATTAGCTCTTCACGGCCTGGCTCTGCGG
CCATGCCCATCATCTCGCGGGTCAGGACCTCGACCATGTCGTTCATGTGC
TGTGGCGGTGCGCTACCGTGAACACAGAAGAGACCACAATCGCCGTAAGC
ATGATTGTAGGCCGTGGCGCTGTACATCCAGTGGTAGCGGTTTAGCACCT
TGGTATACAGGCGCGAGTACATGCCCTTGCCAGGACCGCCTGCGGAGAAG
GATCCACCACCGCCCATCATGATATTCAGGACGCACAGGGGAACGAAGTC
CTTGTCCTGGTGGGAACAGCCTTCAAATCCGAGAATTACATGGGCCAGCT
CTGGTAGCCCAGCGGCCGCATAGATTGGGATTTCGCATTGTTCCTTTACT
AATCCGCCAGTGTATTGTGCAATAGACGTATCTACTTGCTTAGGTCCCGA
GTCCTCCAGGGCTTCCGTTTCCCAGATGGCTTTGTCCTCCACAAAGTATC
TTTGCACATGGCTAACCAGCTCATCATGATCCACGCCTACACCAGCGATG
ACCATGCGCTTGGGAGAGTGATGGTACTTAAGGTAGTTCATTAGCACATT
GCGGTTTATGTGGTCCAGGTTCT

BO07549.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8728-PA 1671 CG8728-RA 764..1668 923..19 4525 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8728-RA 1935 CG8728-RA 923..1827 923..19 4525 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7937204..7937710 189..695 2535 100 Plus
2R 25286936 2R 7936974..7937144 19..189 855 100 Plus
2R 25286936 2R 7937761..7937902 693..834 710 100 Plus
2R 25286936 2R 7937957..7938047 833..923 455 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:06:21 has no hits.

BO07549.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:02 Download gff for BO07549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8728-PA 764..1671 18..923 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:38 Download gff for BO07549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8728-PA 764..1671 18..923 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:10 Download gff for BO07549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 923..1831 13..923 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:43 Download gff for BO07549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 923..1831 13..923 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:43 Download gff for BO07549.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7936970..7937143 13..188 98 <- Plus
2R 7937204..7937708 189..693 100 <- Plus
2R 7937762..7937902 694..834 100 <- Plus
2R 7937959..7938047 835..923 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:10 Download gff for BO07549.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3824475..3824648 13..188 98 <- Plus
arm_2R 3824709..3825213 189..693 100 <- Plus
arm_2R 3825267..3825407 694..834 100 <- Plus
arm_2R 3825464..3825552 835..923 100   Plus

BO07549.5prime Sequence

916 bp (821 high quality bases) assembled on 2006-01-06

> BO07549.5prime
GAAGTTATCAGTCGACATGATGAACGGGCGCAGCATCGGCATGCTGAAAA
AGCTCAGGCACACCTGGCGCACGTTTCCACGCCTTATGGCCACCAAGGTG
ACCAGTCTGGGTGGCGACGAGGTGGGCAGTGGCACAGGAATCGGACAGAT
CACCGGCGGCGTGCGTACAAGTGATGGGCCACAGAAAGTGAACACGCCTT
CCAAGGAGATTGTCACCCACCTGCCACCTCTCACCGAGCCACTGCCCAAC
CTGCCGGAGGCCGTTTACGCAGCTCCACTGGCGGAAAGCGCCATTACAAA
GGTAACGACGCTGCCGAACGGTCTGCGGATTGCCTCGGAACCGCGGTACG
GACAGTTCTGCACTGTGGGCCTGGTTATCGACTCCGGGCCGCGCTACGAA
GTCGCTTACCCCAGCGGCGTGTCGCACTTTCTCGAAAAGCTAGCTTTTAA
TTCCACAGTCAACTTTCCCAACAAGGACGCCATACTTAAGGAGCTGGAGA
AGAACGGAGGCATTTGCGACTGTCAAAGCTCGCGGGACACGCTCATTTAT
GCCGCCAGCATCGACAGCCGGGCTATTGATTCCGTGACGCGTCTGCTGGC
GGACGTCACTTTGCGGCCCACACTTAGCGACCAGGAGGTGAGTCTGGCCA
GGCGGGCCGTCAACTTTGAGCTGGAGACACTGGGCATGCGGCCTGAGCAG
GAGCCAATACTGATGGACATGATCCACGCGGCAGCATTCAGGGACAATAC
CTTGGGCCTGCCCAAGCTATGTCCCCTTGAGAACCTGGACCACATAAACC
GCAATGTGCTAATGAACTACCTTAAGTACCATCACTCTCCCAAGCGCATG
GTCATCGCTGGTGTAGGCGTGGATCATGATGAGCTGGTTAGCCATGTGCA
AAGATACTTTGTGGAG

BO07549.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8728-PA 1671 CG8728-RA 1..900 17..916 4450 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8728-RA 1935 CG8728-RA 158..1059 15..916 4480 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7937957..7938375 870..452 2080 99.8 Minus
2R 25286936 2R 7938437..7938819 451..69 1885 99.5 Minus
2R 25286936 2R 7938898..7938957 74..15 300 100 Minus
2R 25286936 2R 7937855..7937902 916..869 240 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:02:17 has no hits.

BO07549.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:03 Download gff for BO07549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8728-PA 1..900 17..916 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:39 Download gff for BO07549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8728-PA 1..900 17..916 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:45:23 Download gff for BO07549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 154..1059 9..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:00:09 Download gff for BO07549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 154..1059 9..916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:00:09 Download gff for BO07549.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7937855..7937902 869..916 100 <- Minus
2R 7937959..7938375 452..868 99 <- Minus
2R 7938437..7938815 73..451 99 <- Minus
2R 7938900..7938961 9..72 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:45:23 Download gff for BO07549.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3825360..3825407 869..916 100 <- Minus
arm_2R 3825464..3825880 452..868 99 <- Minus
arm_2R 3825942..3826320 73..451 99 <- Minus
arm_2R 3826405..3826466 9..72 95   Minus

BO07549.complete Sequence

1702 bp (1702 high quality bases) assembled on 2006-08-21

GenBank Submission: FJ630836

> BO07549.complete
GAAGTTATCAGTCGACATGATGAACGGGCGCAGCATCGGCATGCTGAAAA
AGCTCAGGCACACCTGGCGCACGTTTCCACGCCTTATGGCCACCAAGGTG
ACCAGTCTGGGTGGCGACGAGGTGGGCAGTGGCACAGGAATCGGACAGAT
CACCGGCGGCGTGCGTACAAGTGATGGGCCACAGAAAGTGAACACGCCTT
CCAAGGAGATTGTCACCCACCTGCCACCTCTCACCGAGCCACTGCCCAAC
CTGCCGGAGGCCGTTTACGCAGCTCCACTGGCGGAAAGCGCCATTACAAA
GGTAACGACGCTGCCGAACGGTCTGCGGATTGCCTCGGAACCGCGGTACG
GACAGTTCTGCACTGTGGGCCTGGTTATCGACTCCGGGCCGCGCTACGAA
GTCGCTTACCCCAGCGGCGTGTCGCACTTTCTCGAAAAGCTAGCTTTTAA
TTCCACAGTCAACTTTCCCAACAAGGACGCCATACTTAAGGAGCTGGAGA
AGAACGGAGGCATTTGCGACTGTCAGAGCTCGCGGGACACGCTCATTTAT
GCCGCCAGCATCGACAGCCGGGCTATTGATTCCGTGACGCGTCTGCTGGC
GGACGTCACTTTGCGGCCCACACTTAGCGACCAGGAGGTGAGTCTGGCCA
GGCGGGCCGTCAACTTTGAGCTGGAGACACTGGGCATGCGGCCTGAGCAG
GAGCCAATACTGATGGACATGATCCACGCGGCAGCATTCAGGGACAATAC
CTTGGGCCTGCCCAAGCTATGTCCCCTTGAGAACCTGGACCACATAAACC
GCAATGTGCTAATGAACTACCTTAAGTACCATCACTCTCCCAAGCGCATG
GTCATCGCTGGTGTAGGCGTGGATCATGATGAGCTGGTTAGCCATGTGCA
AAGATACTTTGTGGAGGACAAAGCCATCTGGGAAACGGAAGCCCTGGAGG
ACTCGGGACCTAAGCAAGTAGATACGTCTATTGCACAATACACTGGCGGA
TTAGTAAAGGAACAATGCGAAATCCCAATCTATGCGGCCGCTGGGCTACC
AGAGCTGGCCCATGTAATTCTCGGATTTGAAGGCTGTTCCCACCAGGACA
AGGACTTCGTTCCCCTGTGCGTCCTGAATATCATGATGGGCGGTGGTGGA
TCCTTCTCCGCAGGCGGTCCTGGCAAGGGCATGTACTCGCGCCTGTATAC
CAAGGTGCTAAACCGCTACCACTGGATGTACAGCGCCACGGCCTACAATC
ATGCTTACGGCGATTGTGGTCTCTTCTGTGTTCACGGTAGCGCACCGCCA
CAGCACATGAACGACATGGTCGAGGTCCTGACCCGCGAGATGATGGGCAT
GGCCGCAGAGCCAGGCCGTGAAGAGCTAATGCGCTCGAAGATCCAGCTTC
AGTCCATGTTACTAATGAACCTGGAGTCGAGACCCGTTGTGTTCGAGGAC
GTGGGCCGCCAAGTGCTGGTGACGGGGCAGCGAAAACGACCGCAGCATTT
TATCAAGGAAATTGAAAGTGTAACTGCCGCCGATATCCAACGCGTTGCTC
AACGTCTCCTGAGCTCGCCGCCTTCTGTGGCCGCCCGCGGCGACATCCAC
AATCTTCCCGAGATGAGCCACATCACCAACGCGGTCAGTGGTTCAGGACG
TACCGGGCTGGGACGTAGGCTTTCCTTGTTCAAAGCAAGCTTTCTAGACC
AT

BO07549.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8728-RA 1671 CG8728-PA 1..1668 17..1684 8325 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8728-RA 1935 CG8728-RA 158..1827 15..1684 8335 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7937204..7937710 1514..1008 2535 100 Minus
2R 25286936 2R 7937957..7938375 870..452 2095 100 Minus
2R 25286936 2R 7938437..7938819 451..69 1885 99.5 Minus
2R 25286936 2R 7936974..7937144 1684..1514 855 100 Minus
2R 25286936 2R 7937761..7937902 1010..869 710 100 Minus
2R 25286936 2R 7938898..7938957 74..15 300 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:43:39 has no hits.

BO07549.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:11 Download gff for BO07549.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 1..1671 17..1685 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:30 Download gff for BO07549.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 209..1886 9..1690 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:38 Download gff for BO07549.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 160..1827 17..1686 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:11 Download gff for BO07549.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 209..1886 9..1690 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:23 Download gff for BO07549.complete
Subject Subject Range Query Range Percent Splice Strand
CG8728-RA 160..1827 17..1686 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:23 Download gff for BO07549.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7936970..7937143 1515..1686 98 <- Minus
2R 7937204..7937708 1010..1514 100 <- Minus
2R 7937762..7937902 869..1009 100 <- Minus
2R 7937959..7938375 452..868 100 <- Minus
2R 7938437..7938815 73..451 99 <- Minus
2R 7938900..7938955 17..72 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:38 Download gff for BO07549.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3824475..3824648 1515..1686 98 <- Minus
arm_2R 3824709..3825213 1010..1514 100 <- Minus
arm_2R 3825267..3825407 869..1009 100 <- Minus
arm_2R 3825464..3825880 452..868 100 <- Minus
arm_2R 3825942..3826320 73..451 99 <- Minus
arm_2R 3826405..3826460 17..72 100   Minus

BO07549.pep Sequence

Translation from 16 to 1702

> BO07549.pep
MMNGRSIGMLKKLRHTWRTFPRLMATKVTSLGGDEVGSGTGIGQITGGVR
TSDGPQKVNTPSKEIVTHLPPLTEPLPNLPEAVYAAPLAESAITKVTTLP
NGLRIASEPRYGQFCTVGLVIDSGPRYEVAYPSGVSHFLEKLAFNSTVNF
PNKDAILKELEKNGGICDCQSSRDTLIYAASIDSRAIDSVTRLLADVTLR
PTLSDQEVSLARRAVNFELETLGMRPEQEPILMDMIHAAAFRDNTLGLPK
LCPLENLDHINRNVLMNYLKYHHSPKRMVIAGVGVDHDELVSHVQRYFVE
DKAIWETEALEDSGPKQVDTSIAQYTGGLVKEQCEIPIYAAAGLPELAHV
ILGFEGCSHQDKDFVPLCVLNIMMGGGGSFSAGGPGKGMYSRLYTKVLNR
YHWMYSATAYNHAYGDCGLFCVHGSAPPQHMNDMVEVLTREMMGMAAEPG
REELMRSKIQLQSMLLMNLESRPVVFEDVGRQVLVTGQRKRPQHFIKEIE
SVTAADIQRVAQRLLSSPPSVAARGDIHNLPEMSHITNAVSGSGRTGLGR
RLSLFKASFLDH

BO07549.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8728-PA 556 CG8728-PA 1..556 1..556 2891 100 Plus
CG3731-PB 470 CG3731-PB 41..465 94..540 454 28.5 Plus
CG3731-PA 470 CG3731-PA 41..465 94..540 454 28.5 Plus