Clone Sequence Records
BO07550.3prime Sequence
906 bp (812 high quality bases) assembled on 2006-01-06
> BO07550.3prime
ATGGTCTAGAAAGCTTGCTAGCATAAGCGCAGACTCGGTCATCTCGTTAA
GTTCCTCTTCAAGGGCCCCGCTTCCGTTTTCCTTGTTGCTTAGAAATGTG
AAGTGCACCAGGCGTTTGTCGTGCTGCTCGTGGCCGGCCAGATGTGATCG
CATCTCGGGCATCGACTTGAACTCCTCATTGCACACCGGACAAATGTAGA
TCCGCTCGCCCTGATGTGTACGCTGGTGCATCTGGCAGTCACCCCGCTGC
GTAAAGGTCTTCGAGCAGAAGGGACAGACGTACGGCCGCTCACCTGTGTG
CGTCCTTCGGTGGTTCTTTAGCACATTGAGGGCAGTGAATCTCATGGGGC
AGAGATCGCAGGCGTATGGCCGTTCGCCAGTGTGCTTTCGTTTGTGCTTG
GCCAGGGAGCAACTAGTGGTGAATCTGGCCAAGCACACCTCACACTCGAA
GGGCTTGTCGCCGGTGTGGGTGCGTGCATGAGAGGTGAGTTCCGCCTTGG
TAACAAACGAGTGCGGGCACAGCTCGCACTTGAAACTCTTTGTCTCCGAG
TGACGCAGCTTGTGCTGGCGCAGATTGGCATTCTGTGTAAAGCTCTTGCC
ACAGATATTGCACACAAAGGGTTTCTCGCCGGTGTGGATGCGCATGTGGT
CACGCAGCGTGGACAGCATGGTGAATACTTTCTGACAGATATTGCACTGA
TTCCGCAGATTCCGCTTGTGGCCCTGCACCATGTGCTTGCTAAGTGCCTC
CTTGGAATCACAGCGTATTCCACACTCCGGGCAATTGTGGGCACCATGAC
TGGCCTGGTGTTCCGCCCAGTGATCCGGCGACACGAAGACCTTTTCGCAC
TCATTGCACTTGTAGTTGCGATTAATGCAGCCCTTTTGCCGTCTGTGGAT
CATCAA
BO07550.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6654-PA | 1920 | CG6654-RA | 1030..1917 | 906..19 | 4390 | 99.7 | Minus |
| CG12071-PA | 654 | CG12071-RA | 606..632 | 649..623 | 135 | 100 | Minus |
| CG12071-PB | 1737 | CG12071-RB | 606..632 | 649..623 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6654-RA | 2262 | CG6654-RA | 1103..1990 | 906..19 | 4410 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15211549..15212209 | 19..679 | 3305 | 100 | Plus |
| 3R | 32079331 | 3R | 15212263..15212491 | 678..906 | 1115 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:37:53 has no hits.
BO07550.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:05 Download gff for
BO07550.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-PA | 1032..1920 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:41 Download gff for
BO07550.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-PA | 1032..1920 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:09:39 Download gff for
BO07550.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 1105..1993 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:40 Download gff for
BO07550.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 1105..1993 | 15..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:40 Download gff for
BO07550.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15211545..15212207 | 15..677 | 99 | <- | Plus |
| 3R | 15212263..15212489 | 678..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:09:39 Download gff for
BO07550.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11037267..11037929 | 15..677 | 99 | <- | Plus |
| arm_3R | 11037985..11038211 | 678..904 | 99 | | Plus |
BO07550.5prime Sequence
793 bp (789 high quality bases) assembled on 2006-01-06
> BO07550.5prime
GAAGTTATCAGTCGACATGGATGTGGACAAGATCTGTCTTACCTGCCTGA
GTTCCACGGGACCACTCCTGTCCATCTACGACGGCGGATCCGGCAGCTGC
CTGGCGGACATGATCCGGGAGTTCACAAAAACCAAGCCCCGCCGCAACGA
TAATCTGCCCGAGAAGGTGTGCCTAAGCTGTTTGAGTGAAATCTCCAATT
GCTATACCTTCAAGATCAAGTGCGAGAACTCCAGTCGCACCCTGCGCCAA
TTGCTGCCGAATGCGTTGCCGGAGGAGCCCGATAGCAAGGTGTCTATCAG
TTGTCCAGTGGCCACGACGGACCAGGCTGTGCAGACCACTAGCTGGGAGC
CGGACAGATGCACAGCCTCCGTGCAAACGGACGCAGTGACTACCACAGAC
GCCGAACAGAATACCAGCCTGATTAAGTCAACGATTTCAGTGGACCTGGA
CTACGAAGGCGAGGGCGAGGTATTCGATTACGAGCTGCCGGATGAGCCCG
TCGAAAAGACCACCAGCCTCATCCTGCAGGTCCAGGGGAACTTGAAGGAC
GAAAAGGAAGTTGTGTTTACCCAAACCAATGTTATTTACGAAGGCGACGA
CCACGAGCTGGAACAGCAGATCAGGGAATGTAACCTGGCCATCTTCGAAG
GTGTCGATAACGAGGCGGAGATCATCACAGTAACCGCTCCGCAGGTAACC
ACCAGAAAGAGCGCTGCCAAGCTTCTAACGCAGCAGGAAAACGATAAGCA
TCAGACTCCTGTGGGTTCTAAGGAGGAAGCACGCGAATTAGAG
BO07550.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6654-PA | 1920 | CG6654-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6654-RA | 2262 | CG6654-RA | 70..850 | 13..793 | 3890 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15212744..15213404 | 793..133 | 3305 | 100 | Minus |
| 3R | 32079331 | 3R | 15213466..15213589 | 136..13 | 605 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 21:59:10 has no hits.
BO07550.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:06 Download gff for
BO07550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:43 Download gff for
BO07550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:53 Download gff for
BO07550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 67..850 | 8..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:41:52 Download gff for
BO07550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 67..850 | 8..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:41:52 Download gff for
BO07550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15212744..15213400 | 137..793 | 100 | <- | Minus |
| 3R | 15213466..15213592 | 8..136 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:53 Download gff for
BO07550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11038466..11039122 | 137..793 | 100 | <- | Minus |
| arm_3R | 11039188..11039314 | 8..136 | 97 | | Minus |
BO07550.complete Sequence
1951 bp (1951 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630837
> BO07550.complete
GAAGTTATCAGTCGACATGGATGTGGACAAGATCTGTCTTACCTGCCTGA
GTTCCACGGGACCACTCCTGTCCATCTACGACGGCGGATCCGGCAGCTGC
CTGGCGGACATGATCCGGGAGTTCACAAAAACCAAGCCCCGCCGCAACGA
TAATCTGCCCGAGAAGGTGTGCCTAAGCTGTTTGAGTGAAATCTCCAATT
GCTATACCTTCAAGATCAAGTGCGAGAACTCCAGTCGCACCCTGCGCCAA
TTGCTGCCGAATGCGTTGCCGGAGGAGCCCGATAGCAAGGTGTCTATCAG
TTGTCCAGTGGCCACGACGGACCAGGCTGTGCAGACCACTAGCTGGGAGC
CGGACAGATGCACAGCCTCCGTGCAAACGGACGCAGTGACTACCACAGAC
GCCGAACAGAATACCAGCCTGATTAAGTCAACGATTTCAGTGGACCTGGA
CTACGAAGGCGAGGGCGAGGTATTCGATTACGAGCTGCCGGATGAGCCCG
TCGAAAAGACCACCAGCCTCATCCTGCAGGTCCAGGGGAACTTGAAGGAC
GAAAAGGAAGTTGTGTTTACCCAAACCAATGTTATTTACGAAGGCGACGA
CCACGAGCTGGAACAGCAGATCAGGGAATGTAACCTGGCCATCTTCGAAG
GTGTCGATAACGAGGCGGAGATCATCACAGTAACCGCTCCGCAGGTAACC
ACCAGAAAGAGCGCTGCCAAGCTTCTAACGCAGCAGGAAAACGATAAGCA
TCAGACTCCTGTGGGTTCTAAGGAGGAAGCACGCGAATTAGAGAAGGAAC
AAGTACCTCAGTCGGCTAAGCGCACCTCACGGCGTCGCGGAGTTGTCAAG
CAGGATGTACCGGCTACACCGCCGTCAGATGCAGAGCCTTCCCCCAAACA
GCATCGGTTAGGAACACAGCGAAAACTCAGCGCGCCAAGAGCGGGAACAG
TAAACGGGCCAAGCACAACGTCAGGAGCAGCTACTACCCCTGAGCTCAAA
TATCACTGTGATCGTTGCAATGCGGGATTCGCGGTGGAGAAATCGTTGAT
GATCCACAGACGCCAAAAGGGCTGCATTAATCGCAACTACAAGTGCAATG
AGTGCGAAAAGGTCTTCGTGTCGCCGGATCACTTGGCGGAACACCAGGCC
AGTCATGGTGCCCACAATTGCCCGGAGTGTGGAATACGCTGTGATTCCAA
GGAGGCACTTAGCAAGCACATGGTGCAGGGCCACAAGCGGAATCTGCGGA
ATCAGTGCAATATCTGTCAGAAAGTATTCACCATGCTGTCCACGCTGCGT
GACCACATGCGCATCCACACCGGCGAGAAACCCTTTGTGTGCAATATCTG
TGGCAAGAGCTTTACACAGAATGCCAATCTGCGCCAGCACAAGCTGCGTC
ACTCGGAGACAAAGAGTTTCAAGTGCGAGCTGTGCCCGCACTCGTTTGTT
ACCAAGGCGGAACTCACCTCTCATGCACGCACCCACACCGGCGACAAGCC
CTTCGAGTGTGAGGTGTGCTTGGCCAGATTCACCACTAGTTGCTCCCTGG
CCAAGCACAAACGAAAGCACACTGGCGAACGGCCATACGCCTGCGATCTC
TGCCCCATGAGATTCACTGCCCTCAATGTGCTAAAGAACCACCGAAGGAC
GCACACAGGTGAGCGGCCGTACGTCTGTCCCTTCTGCTCGAAGACCTTTA
CGCAGCGGGGTGACTGCCAGATGCACCAGCGTACACATCAGGGCGAGCGG
ATCTACATTTGTCCGGTGTGCAATGAGGAGTTCAAGTCGATGCCCGAGAT
GCGATCACATCTGGCCGGCCACGAGCAGCACGACAAACGCCTGGTGCACT
TCACATTTCTAAGCAACAAGGAAAACGGAAGCGGGGCCCTTGAAGAGGAA
CTTAACGAGATGACCGAGTCTGCGCTTATGCTAGCAAGCTTTCTAGACCA
T
BO07550.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6654-RA | 1920 | CG6654-PA | 1..1917 | 17..1933 | 9585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6654-RA | 2262 | CG6654-RA | 70..1990 | 13..1933 | 9590 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15212263..15213404 | 1274..133 | 5710 | 100 | Minus |
| 3R | 32079331 | 3R | 15211549..15212209 | 1933..1273 | 3305 | 100 | Minus |
| 3R | 32079331 | 3R | 15213466..15213589 | 136..13 | 605 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:46:35 has no hits.
BO07550.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:47 Download gff for
BO07550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 1..1920 | 17..1937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:46 Download gff for
BO07550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 9..1935 | 8..1937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:10 Download gff for
BO07550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 74..1990 | 17..1935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:47 Download gff for
BO07550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 9..1935 | 8..1937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:33 Download gff for
BO07550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6654-RA | 74..1990 | 17..1935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:33 Download gff for
BO07550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15211547..15212207 | 1275..1935 | 99 | <- | Minus |
| 3R | 15212263..15213400 | 137..1274 | 100 | <- | Minus |
| 3R | 15213466..15213585 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:10 Download gff for
BO07550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11037269..11037929 | 1275..1935 | 99 | <- | Minus |
| arm_3R | 11037985..11039122 | 137..1274 | 100 | <- | Minus |
| arm_3R | 11039188..11039307 | 17..136 | 100 | | Minus |
BO07550.pep Sequence
Translation from 16 to 1951
> BO07550.pep
MDVDKICLTCLSSTGPLLSIYDGGSGSCLADMIREFTKTKPRRNDNLPEK
VCLSCLSEISNCYTFKIKCENSSRTLRQLLPNALPEEPDSKVSISCPVAT
TDQAVQTTSWEPDRCTASVQTDAVTTTDAEQNTSLIKSTISVDLDYEGEG
EVFDYELPDEPVEKTTSLILQVQGNLKDEKEVVFTQTNVIYEGDDHELEQ
QIRECNLAIFEGVDNEAEIITVTAPQVTTRKSAAKLLTQQENDKHQTPVG
SKEEARELEKEQVPQSAKRTSRRRGVVKQDVPATPPSDAEPSPKQHRLGT
QRKLSAPRAGTVNGPSTTSGAATTPELKYHCDRCNAGFAVEKSLMIHRRQ
KGCINRNYKCNECEKVFVSPDHLAEHQASHGAHNCPECGIRCDSKEALSK
HMVQGHKRNLRNQCNICQKVFTMLSTLRDHMRIHTGEKPFVCNICGKSFT
QNANLRQHKLRHSETKSFKCELCPHSFVTKAELTSHARTHTGDKPFECEV
CLARFTTSCSLAKHKRKHTGERPYACDLCPMRFTALNVLKNHRRTHTGER
PYVCPFCSKTFTQRGDCQMHQRTHQGERIYICPVCNEEFKSMPEMRSHLA
GHEQHDKRLVHFTFLSNKENGSGALEEELNEMTESALMLASFLDH
BO07550.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:35:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6654-PA | 639 | CG6654-PA | 1..639 | 1..639 | 3425 | 100 | Plus |
| crol-PH | 686 | CG14938-PH | 151..464 | 299..603 | 496 | 34.2 | Plus |
| crol-PC | 756 | CG14938-PC | 151..463 | 299..603 | 493 | 34 | Plus |
| crol-PB | 891 | CG14938-PB | 328..607 | 324..602 | 489 | 33.3 | Plus |
| crol-PI | 962 | CG14938-PI | 328..607 | 324..602 | 489 | 33.3 | Plus |
| crol-PB | 891 | CG14938-PB | 356..633 | 324..600 | 488 | 33.6 | Plus |
| crol-PB | 891 | CG14938-PB | 305..579 | 329..602 | 486 | 34.3 | Plus |
| crol-PC | 756 | CG14938-PC | 262..516 | 324..572 | 464 | 36.2 | Plus |
| crol-PB | 891 | CG14938-PB | 384..669 | 324..603 | 461 | 33.7 | Plus |
| crol-PB | 891 | CG14938-PB | 412..683 | 324..589 | 449 | 33.9 | Plus |
| crol-PC | 756 | CG14938-PC | 234..515 | 324..599 | 446 | 33.1 | Plus |
| crol-PB | 891 | CG14938-PB | 151..439 | 299..602 | 427 | 31.2 | Plus |
| crol-PH | 686 | CG14938-PH | 234..478 | 323..561 | 381 | 34 | Plus |
| crol-PH | 686 | CG14938-PH | 291..490 | 324..519 | 294 | 33.8 | Plus |
| crol-PB | 891 | CG14938-PB | 496..695 | 324..519 | 294 | 33.8 | Plus |
| crol-PC | 756 | CG14938-PC | 346..521 | 324..493 | 216 | 30.9 | Plus |
