Clone BO07553 Report

Search the DGRC for BO07553

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG42807-RA
Protein status:BO07553.pep: validated not full length
Sequenced Size:868

Clone Sequence Records

BO07553.3prime Sequence

838 bp (810 high quality bases) assembled on 2006-01-06

> BO07553.3prime
ATGGTCTAGAAAGCTTGCACTGCTGATCAGGACCTCTACACAGCTCATAG
CATTGGTTACAAACTTGAAGGGATTCCGGATGGTATCGTTGCGAGGATTG
ATCTCCGACAGAGAAACATATGACTTATTCGGACACGATTGCTCTTCAAA
GGATCCACAGATCACCTTATTGGAAATGCAGGAGTCGATGAGTTGCAGCG
CCAGTTCCACTTTGGAGGTAATAGAGTACACCTGGCCAAAGGAGCACTGC
CAGGAGTTCCTAATGCGATTATCAGCCGTGCATTCCGAACTCTTCAGGTT
GGTATTGAAAGTATTCTGTGTGGTGATGGTATACTTATTGGCATCACCAA
TCACCTTGGTTACACAGAGTGTGTAATTTAACTGGGCAGTTGGATGAAGT
TTTAGGCATTGTGCCAAACCATTCTTCACGTTATTTTTATAGTAGTTATT
CAGGGTGTTGTAGGTGCTCTCAGGTGCATTTAAAATGCCACTAATACTTT
CCTTACACTTGATAATGGAGTCCCTGGCCACGGTGATCGTTGGTATAGTA
ACACTATAGTTCTGTACGCATTGTTTGCTCCAGGAATCGATCAGGATAAT
GGGATCCAGGTGAGCGGAGGCTTGTTCCAATTTTAGCTGCATCGAATCTG
CTTGCACATCGAGCGCATTGATTTGCTTCTGAAATAGCTGCTTAAAATTG
GCTAATTCATCTGCCAGCTGTTTGATCTTCGCGTCATATTGCCGCTGATT
CTGGAGTATATAGAGATCCATGGACTGGGAGCTGTTCTGCGCCTGGCTAG
CCACCAGGCTCAGAAGAGCCAGAATGATTGCTACTCCC

BO07553.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13335-PA 1233 CG13335-RA 411..1230 838..19 4100 100 Minus
CG13335-PB 837 CG13335-RB 15..834 838..19 4100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG42807-RB 2101 CG42807-RB 244..1063 838..19 4100 100 Minus
CG42807-RA 957 CG13335-RA 29..848 838..19 4100 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13572030..13572516 352..838 2435 100 Plus
2R 25286936 2R 13571633..13571966 19..352 1670 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:26:15 has no hits.

BO07553.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:11 Download gff for BO07553.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13335-PA 411..1233 15..838 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:50 Download gff for BO07553.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13335-PB 15..837 15..838 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:25:31 Download gff for BO07553.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42807-RA 25..853 9..838 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:49:37 Download gff for BO07553.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42807-RA 29..857 9..838 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:49:37 Download gff for BO07553.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13571624..13571965 9..351 98 <- Plus
2R 13572030..13572516 352..838 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:25:31 Download gff for BO07553.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9459129..9459470 9..351 98 <- Plus
arm_2R 9459535..9460021 352..838 100   Plus

BO07553.5prime Sequence

791 bp (789 high quality bases) assembled on 2006-01-06

> BO07553.5prime
GAAGTTATCAGTCGACATGCAGAGCTTTCTGGGAGTAGCAATCATTCTGG
CTCTTCTGAGCCTGGTGGCTAGCCAGGCGCAGAACAGCTCCCAGTCCATG
GATCTCTATATACTCCAGAATCAGCGGCAATATGACGCGAAGATCAAACA
GCTGGCAGATGAATTAGCCAATTTTAAGCAGCTATTTCAGAAGCAAATCA
ATGCGCTCGATGTGCAAGCAGATTCGATGCAGCTAAAATTGGAACAAGCC
TCCGCTCACCTGGATCCCATTATCCTGATCGATTCCTGGAGCAAACAATG
CGTACAGAACTATAGTGTTACTATACCAACGATCACCGTGGCCAGGGACT
CCATTATCAAGTGTAAGGAAAGTATTAGTGGCATTTTAAATGCACCTGAG
AGCACCTACAACACCCTGAATAACTACTATAAAAATAACGTGAAGAATGG
TTTGGCACAATGCCTAAAACTTCATCCAACTGCCCAGTTAAATTACACAC
TCTGTGTAACCAAGGTGATTGGTGATGCCAATAAGTATACCATCACCACA
CAGAATACTTTCAATACCAACCTGAAGAGTTCGGAATGCACGGCTGATAA
TCGCATTAGGAACTCCTGGCAGTGCTCCTTTGGCCAGGTGTACTCTATTA
CCTCCAAAGTGGAACTGGCGCTGCAACTCATCGACTCCTGCATTTCCAAT
AAGGTGATCTGTGGATCCTTTGAAGAGCAATCGTGTCCGAATAAGTCATA
TGTTTCTCTGTCGGAGATCAATCCTCGCAACGATACCATCC

BO07553.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13335-PA 1233 CG13335-RA 397..1171 17..791 3875 100 Plus
CG13335-PB 837 CG13335-RB 1..775 17..791 3875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG42807-RB 2101 CG42807-RB 222..1004 9..791 3885 99.7 Plus
CG42807-RA 957 CG13335-RA 7..789 9..791 3885 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13572030..13572538 517..9 2515 99.6 Minus
2R 25286936 2R 13571692..13571966 791..517 1375 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:07:21 has no hits.

BO07553.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:12 Download gff for BO07553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13335-PA 397..1171 17..791 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:51 Download gff for BO07553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13335-PB 1..775 17..791 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:13 Download gff for BO07553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42807-RA 3..785 9..791 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:50 Download gff for BO07553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42807-RA 7..789 9..791 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:50 Download gff for BO07553.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13571692..13571965 518..791 100 <- Minus
2R 13572030..13572538 9..517 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:13 Download gff for BO07553.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9459197..9459470 518..791 100 <- Minus
arm_2R 9459535..9460043 9..517 99   Minus

BO07553.complete Sequence

868 bp (868 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630838

> BO07553.complete
GAAGTTATCAGTCGACATGCAGAGCTTTCTGGGAGTAGCAATCATTCTGG
CTCTTCTGAGCCTGGTGGCTAGCCAGGCGCAGAACAGCTCCCAGTCCATG
GATCTCTATATACTCCAGAATCAGCGGCAATATGACGCGAAGATCAAACA
GCTGGCAGATGAATTAGCCAATTTTAAGCAGCTATTTCAGAAGCAAATCA
ATGCGCTCGATGTGCAAGCAGATTCGATGCAGCTAAAATTGGAACAAGCC
TCCGCTCACCTGGATCCCATTATCCTGATCGATTCCTGGAGCAAACAATG
CGTACAGAACTATAGTGTTACTATACCAACGATCACCGTGGCCAGGGACT
CCATTATCAAGTGTAAGGAAAGTATTAGTGGCATTTTAAATGCACCTGAG
AGCACCTACAACACCCTGAATAACTACTATAAAAATAACGTGAAGAATGG
TTTGGCACAATGCCTAAAACTTCATCCAACTGCCCAGTTAAATTACACAC
TCTGTGTAACCAAGGTGATTGGTGATGCCAATAAGTATACCATCACCACA
CAGAATACTTTCAATACCAACCTGAAGAGTTCGGAATGCACGGCTGATAA
TCGCATTAGGAACTCCTGGCAGTGCTCCTTTGGCCAGGTGTACTCTATTA
CCTCCAAAGTGGAACTGGCGCTGCAACTCATCGACTCCTGCATTTCCAAT
AAGGTGATCTGTGGATCCTTTGAAGAGCAATCGTGTCCGAATAAGTCATA
TGTTTCTCTGTCGGAGATCAATCCTCGCAACGATACCATCCGGAATCCCT
TCAAGTTTGTAACCAATGCTATGAGCTGTGTAGAGGTCCTGATCAGCAGT
GCAAGCTTTCTAGACCAT

BO07553.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG42807-RB 837 CG42807-PB 1..834 17..850 4170 100 Plus
CG42807-RA 837 CG42807-PA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG42807-RB 2101 CG42807-RB 222..1063 9..850 4180 99.8 Plus
CG42807-RA 957 CG13335-RA 7..848 9..850 4180 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13572030..13572538 517..9 2515 99.6 Minus
2R 25286936 2R 13571633..13571966 850..517 1670 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:59:02 has no hits.

BO07553.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:53 Download gff for BO07553.complete
Subject Subject Range Query Range Percent Splice Strand
CG13335-RB 1..837 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:50 Download gff for BO07553.complete
Subject Subject Range Query Range Percent Splice Strand
CG13335-RB 1692..2542 9..860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:59 Download gff for BO07553.complete
Subject Subject Range Query Range Percent Splice Strand
CG42807-RA 11..844 17..852 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:53 Download gff for BO07553.complete
Subject Subject Range Query Range Percent Splice Strand
CG13335-RB 1692..2542 9..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:10 Download gff for BO07553.complete
Subject Subject Range Query Range Percent Splice Strand
CG42807-RA 15..848 17..852 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:10 Download gff for BO07553.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13571631..13571965 518..852 99 <- Minus
2R 13572030..13572530 17..517 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:59 Download gff for BO07553.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9459136..9459470 518..852 99 <- Minus
arm_2R 9459535..9460035 17..517 100   Minus

BO07553.pep Sequence

Translation from 16 to 868

> BO07553.pep
MQSFLGVAIILALLSLVASQAQNSSQSMDLYILQNQRQYDAKIKQLADEL
ANFKQLFQKQINALDVQADSMQLKLEQASAHLDPIILIDSWSKQCVQNYS
VTIPTITVARDSIIKCKESISGILNAPESTYNTLNNYYKNNVKNGLAQCL
KLHPTAQLNYTLCVTKVIGDANKYTITTQNTFNTNLKSSECTADNRIRNS
WQCSFGQVYSITSKVELALQLIDSCISNKVICGSFEEQSCPNKSYVSLSE
INPRNDTIRNPFKFVTNAMSCVEVLISSASFLDH

BO07553.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG42807-PB 278 CG42807-PB 1..278 1..278 1415 100 Plus
CG42807-PA 278 CG13335-PA 1..278 1..278 1415 100 Plus