Clone Sequence Records
BO07553.3prime Sequence
838 bp (810 high quality bases) assembled on 2006-01-06
> BO07553.3prime
ATGGTCTAGAAAGCTTGCACTGCTGATCAGGACCTCTACACAGCTCATAG
CATTGGTTACAAACTTGAAGGGATTCCGGATGGTATCGTTGCGAGGATTG
ATCTCCGACAGAGAAACATATGACTTATTCGGACACGATTGCTCTTCAAA
GGATCCACAGATCACCTTATTGGAAATGCAGGAGTCGATGAGTTGCAGCG
CCAGTTCCACTTTGGAGGTAATAGAGTACACCTGGCCAAAGGAGCACTGC
CAGGAGTTCCTAATGCGATTATCAGCCGTGCATTCCGAACTCTTCAGGTT
GGTATTGAAAGTATTCTGTGTGGTGATGGTATACTTATTGGCATCACCAA
TCACCTTGGTTACACAGAGTGTGTAATTTAACTGGGCAGTTGGATGAAGT
TTTAGGCATTGTGCCAAACCATTCTTCACGTTATTTTTATAGTAGTTATT
CAGGGTGTTGTAGGTGCTCTCAGGTGCATTTAAAATGCCACTAATACTTT
CCTTACACTTGATAATGGAGTCCCTGGCCACGGTGATCGTTGGTATAGTA
ACACTATAGTTCTGTACGCATTGTTTGCTCCAGGAATCGATCAGGATAAT
GGGATCCAGGTGAGCGGAGGCTTGTTCCAATTTTAGCTGCATCGAATCTG
CTTGCACATCGAGCGCATTGATTTGCTTCTGAAATAGCTGCTTAAAATTG
GCTAATTCATCTGCCAGCTGTTTGATCTTCGCGTCATATTGCCGCTGATT
CTGGAGTATATAGAGATCCATGGACTGGGAGCTGTTCTGCGCCTGGCTAG
CCACCAGGCTCAGAAGAGCCAGAATGATTGCTACTCCC
BO07553.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13335-PA | 1233 | CG13335-RA | 411..1230 | 838..19 | 4100 | 100 | Minus |
CG13335-PB | 837 | CG13335-RB | 15..834 | 838..19 | 4100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:26:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42807-RB | 2101 | CG42807-RB | 244..1063 | 838..19 | 4100 | 100 | Minus |
CG42807-RA | 957 | CG13335-RA | 29..848 | 838..19 | 4100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13572030..13572516 | 352..838 | 2435 | 100 | Plus |
2R | 25286936 | 2R | 13571633..13571966 | 19..352 | 1670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:26:15 has no hits.
BO07553.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:11 Download gff for
BO07553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13335-PA | 411..1233 | 15..838 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:50 Download gff for
BO07553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13335-PB | 15..837 | 15..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:25:31 Download gff for
BO07553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RA | 25..853 | 9..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:49:37 Download gff for
BO07553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RA | 29..857 | 9..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:49:37 Download gff for
BO07553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13571624..13571965 | 9..351 | 98 | <- | Plus |
2R | 13572030..13572516 | 352..838 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:25:31 Download gff for
BO07553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9459129..9459470 | 9..351 | 98 | <- | Plus |
arm_2R | 9459535..9460021 | 352..838 | 100 | | Plus |
BO07553.5prime Sequence
791 bp (789 high quality bases) assembled on 2006-01-06
> BO07553.5prime
GAAGTTATCAGTCGACATGCAGAGCTTTCTGGGAGTAGCAATCATTCTGG
CTCTTCTGAGCCTGGTGGCTAGCCAGGCGCAGAACAGCTCCCAGTCCATG
GATCTCTATATACTCCAGAATCAGCGGCAATATGACGCGAAGATCAAACA
GCTGGCAGATGAATTAGCCAATTTTAAGCAGCTATTTCAGAAGCAAATCA
ATGCGCTCGATGTGCAAGCAGATTCGATGCAGCTAAAATTGGAACAAGCC
TCCGCTCACCTGGATCCCATTATCCTGATCGATTCCTGGAGCAAACAATG
CGTACAGAACTATAGTGTTACTATACCAACGATCACCGTGGCCAGGGACT
CCATTATCAAGTGTAAGGAAAGTATTAGTGGCATTTTAAATGCACCTGAG
AGCACCTACAACACCCTGAATAACTACTATAAAAATAACGTGAAGAATGG
TTTGGCACAATGCCTAAAACTTCATCCAACTGCCCAGTTAAATTACACAC
TCTGTGTAACCAAGGTGATTGGTGATGCCAATAAGTATACCATCACCACA
CAGAATACTTTCAATACCAACCTGAAGAGTTCGGAATGCACGGCTGATAA
TCGCATTAGGAACTCCTGGCAGTGCTCCTTTGGCCAGGTGTACTCTATTA
CCTCCAAAGTGGAACTGGCGCTGCAACTCATCGACTCCTGCATTTCCAAT
AAGGTGATCTGTGGATCCTTTGAAGAGCAATCGTGTCCGAATAAGTCATA
TGTTTCTCTGTCGGAGATCAATCCTCGCAACGATACCATCC
BO07553.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13335-PA | 1233 | CG13335-RA | 397..1171 | 17..791 | 3875 | 100 | Plus |
CG13335-PB | 837 | CG13335-RB | 1..775 | 17..791 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:07:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42807-RB | 2101 | CG42807-RB | 222..1004 | 9..791 | 3885 | 99.7 | Plus |
CG42807-RA | 957 | CG13335-RA | 7..789 | 9..791 | 3885 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13572030..13572538 | 517..9 | 2515 | 99.6 | Minus |
2R | 25286936 | 2R | 13571692..13571966 | 791..517 | 1375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:07:21 has no hits.
BO07553.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:12 Download gff for
BO07553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13335-PA | 397..1171 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:51 Download gff for
BO07553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13335-PB | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:13 Download gff for
BO07553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RA | 3..785 | 9..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:50 Download gff for
BO07553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RA | 7..789 | 9..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:50 Download gff for
BO07553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13571692..13571965 | 518..791 | 100 | <- | Minus |
2R | 13572030..13572538 | 9..517 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:13 Download gff for
BO07553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9459197..9459470 | 518..791 | 100 | <- | Minus |
arm_2R | 9459535..9460043 | 9..517 | 99 | | Minus |
BO07553.complete Sequence
868 bp (868 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630838
> BO07553.complete
GAAGTTATCAGTCGACATGCAGAGCTTTCTGGGAGTAGCAATCATTCTGG
CTCTTCTGAGCCTGGTGGCTAGCCAGGCGCAGAACAGCTCCCAGTCCATG
GATCTCTATATACTCCAGAATCAGCGGCAATATGACGCGAAGATCAAACA
GCTGGCAGATGAATTAGCCAATTTTAAGCAGCTATTTCAGAAGCAAATCA
ATGCGCTCGATGTGCAAGCAGATTCGATGCAGCTAAAATTGGAACAAGCC
TCCGCTCACCTGGATCCCATTATCCTGATCGATTCCTGGAGCAAACAATG
CGTACAGAACTATAGTGTTACTATACCAACGATCACCGTGGCCAGGGACT
CCATTATCAAGTGTAAGGAAAGTATTAGTGGCATTTTAAATGCACCTGAG
AGCACCTACAACACCCTGAATAACTACTATAAAAATAACGTGAAGAATGG
TTTGGCACAATGCCTAAAACTTCATCCAACTGCCCAGTTAAATTACACAC
TCTGTGTAACCAAGGTGATTGGTGATGCCAATAAGTATACCATCACCACA
CAGAATACTTTCAATACCAACCTGAAGAGTTCGGAATGCACGGCTGATAA
TCGCATTAGGAACTCCTGGCAGTGCTCCTTTGGCCAGGTGTACTCTATTA
CCTCCAAAGTGGAACTGGCGCTGCAACTCATCGACTCCTGCATTTCCAAT
AAGGTGATCTGTGGATCCTTTGAAGAGCAATCGTGTCCGAATAAGTCATA
TGTTTCTCTGTCGGAGATCAATCCTCGCAACGATACCATCCGGAATCCCT
TCAAGTTTGTAACCAATGCTATGAGCTGTGTAGAGGTCCTGATCAGCAGT
GCAAGCTTTCTAGACCAT
BO07553.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42807-RB | 837 | CG42807-PB | 1..834 | 17..850 | 4170 | 100 | Plus |
CG42807-RA | 837 | CG42807-PA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:59:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42807-RB | 2101 | CG42807-RB | 222..1063 | 9..850 | 4180 | 99.8 | Plus |
CG42807-RA | 957 | CG13335-RA | 7..848 | 9..850 | 4180 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13572030..13572538 | 517..9 | 2515 | 99.6 | Minus |
2R | 25286936 | 2R | 13571633..13571966 | 850..517 | 1670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:59:02 has no hits.
BO07553.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:53 Download gff for
BO07553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13335-RB | 1..837 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:50 Download gff for
BO07553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13335-RB | 1692..2542 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:59 Download gff for
BO07553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RA | 11..844 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:53 Download gff for
BO07553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13335-RB | 1692..2542 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:10 Download gff for
BO07553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42807-RA | 15..848 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:10 Download gff for
BO07553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13571631..13571965 | 518..852 | 99 | <- | Minus |
2R | 13572030..13572530 | 17..517 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:59 Download gff for
BO07553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9459136..9459470 | 518..852 | 99 | <- | Minus |
arm_2R | 9459535..9460035 | 17..517 | 100 | | Minus |
BO07553.pep Sequence
Translation from 16 to 868
> BO07553.pep
MQSFLGVAIILALLSLVASQAQNSSQSMDLYILQNQRQYDAKIKQLADEL
ANFKQLFQKQINALDVQADSMQLKLEQASAHLDPIILIDSWSKQCVQNYS
VTIPTITVARDSIIKCKESISGILNAPESTYNTLNNYYKNNVKNGLAQCL
KLHPTAQLNYTLCVTKVIGDANKYTITTQNTFNTNLKSSECTADNRIRNS
WQCSFGQVYSITSKVELALQLIDSCISNKVICGSFEEQSCPNKSYVSLSE
INPRNDTIRNPFKFVTNAMSCVEVLISSASFLDH
BO07553.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42807-PB | 278 | CG42807-PB | 1..278 | 1..278 | 1415 | 100 | Plus |
CG42807-PA | 278 | CG13335-PA | 1..278 | 1..278 | 1415 | 100 | Plus |