Clone Sequence Records
BO07555.3prime Sequence
926 bp (817 high quality bases) assembled on 2006-01-06
> BO07555.3prime
ATGGTCTAGAAAGCTTGCAGACTCGGGATATCGGCAATAGGAATTGCTTT
CGATGGACTCGTGCGGAATCCACTCCTCATACAAGGGCAATCGATTCTTC
AGGGTCTCGATCTCCCGCAGAATCCGCATCACATTTCCCCCAACCAGCTT
CTTAATAGCAGCATTGCCCCACACCCTATCCCTTGCCAGTTCGGCAAGTA
GGAGGGCATAGCTCTTCGGAGCTCCTCCAAGTCCAATGTGATCCACTCCG
GCTACCTTGCGCACATAGTTGATTGCAGTGATGGCCTCGCGAACGCCCAG
TGTCCGATCGCCACAACGCTCCAGGTTGAGCAAGATTACGCCTCCATTTT
CCGGCAATAGGCTGAGGACGTGGTCTGGAATGGAAGCAATGTTGCTGCTA
TTGCACATGGACAGCGGTGTGGCATTCGTGAGTAAAACAGGAGCTTTGGC
AGTTTTCAAAACAGCCAACATGGCAGCCTCGCTGAGCATCGAAATCTCCA
CCAGCATGCCCAGGCGGTTCATCTCAAAGAGCATGGTCTGTCCAAATTCG
TTGAATGAATTCGTAACATTTTCCTCAACAAGATAATCGGGTCTCCGGAT
TGCTGCCGCCGCCCAAGGAGTGGTGCACTCCAGGCTCGTAATCGAGACGA
ATCGTGCTCCCAGCAGGTAGATGGAACGCAAGACGGCCGTGCTGGTGCCC
AGAGCATGGCCACCACTGATACCCATGAGAACAGCCACCTCGCCGCGGAT
GTGAGTCTGCTCCATTTCATCAGCTGATTCGACGATGTGCATGGAATCTG
TGGCGGCGGTAATCCGCTTGGCCCTATCAATGCCCTCCAGTGTGAGCTGC
ACGGCATCAAAGTACTGAGCTCCGCACGGCACAGCAATGGGCCAGAGCAC
AGCACCGATGTGATTCTGTCGCACCT
BO07555.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5282-PA | 1356 | CG5282-RA | 446..1353 | 926..19 | 4515 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5282-RA | 1543 | CG5282-RA | 558..1465 | 926..19 | 4525 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20425126..20425514 | 538..926 | 1930 | 99.7 | Plus |
3L | 28110227 | 3L | 20424502..20424847 | 19..364 | 1730 | 100 | Plus |
3L | 28110227 | 3L | 20424898..20425075 | 362..539 | 890 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:15:19 has no hits.
BO07555.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:15 Download gff for
BO07555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5282-PA | 446..1356 | 18..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:55 Download gff for
BO07555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5282-PA | 446..1356 | 18..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:42 Download gff for
BO07555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5282-RA | 558..1465 | 19..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:27 Download gff for
BO07555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5282-RA | 558..1465 | 19..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:27 Download gff for
BO07555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20424502..20424844 | 19..361 | 100 | <- | Plus |
3L | 20424898..20425073 | 362..537 | 100 | <- | Plus |
3L | 20425126..20425514 | 538..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:42 Download gff for
BO07555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20417602..20417944 | 19..361 | 100 | <- | Plus |
arm_3L | 20417998..20418173 | 362..537 | 100 | <- | Plus |
arm_3L | 20418226..20418614 | 538..926 | 99 | | Plus |
BO07555.5prime Sequence
904 bp (812 high quality bases) assembled on 2006-01-06
> BO07555.5prime
GAAGTTATCAGTCGACATGAATCCCGTACCGAGCCGCGAGTTCCTGGAGG
TTCATCCGCTGCACCAGCATCAACCACACTGTAAGCAGCAATGTTTTGTA
TTCACGGAGATAGCGGACATCGAACTGCCCGCGGAGATAACCAAGTTCGG
AGGTGGAAATGAAAAGATTAGGTGCTCCAACGGGGGCATCCCCACTTACA
GCTCCAAGAAGGACTCCTGCAGCGAGTCCTCTGCGGAGAGACCAGAGAGA
TCACGAGGACGAAAGATTTTGCTGGGCGTTGGTGTGGTGCTCGTGTGCAT
TGCCATGGCGGGTGGTATTCCGCTGGCCCTCCAGTTGCGCTCTTCGTCGC
TCCTGGAGGCCCGACTCGCCTTCATCCGCCGCCTGCTGACGGAGTCTCCA
CTGATCGAGGGCTCGTGGAAGCCACCGAGCACCATGAGCCTGAACAGCAG
CAACCTCTTCGAGGTGCGACAGAATCACATCGGTGCTGTGCTCTGGCCCA
TTGCTGTGCCGTGCGGAGCTCAGTACTTGGATGCCGTGCAGCTCACACTG
GAGGGCATTGATAGGGCCAAGCGGATTACCGCCGCCACAGATTCCATGCA
CATCGTCGAATCAGCTGATGAAATGGAGCAGACTCACATCCGCGGCGAGG
TGGCTGTTCTCATGGGTATCAGTGGTGGCCATGCTCTGGGCACCAGCACG
GCCGTCTTGCGTTCCATCTACCTGCTGGGAGCACGATTCGTCTCGATTAC
GAGCCTGGAGTGCACCACTCCTTGGGCGGCGGCAGCAATCCGGAGACCCG
ATTATCTTGTTGAGGAAAATGTTACGAATTCATTTCACGAATTTGGACAG
ACCATGCTCTTTGAGATGAACCGCCTGGGCATGCTGGTGGAGATTTCGAT
GCTC
BO07555.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5282-PA | 1356 | CG5282-RA | 1..888 | 17..904 | 4365 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5282-RA | 1543 | CG5282-RA | 113..1000 | 17..904 | 4395 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20425126..20425959 | 850..17 | 4125 | 99.6 | Minus |
3L | 28110227 | 3L | 20425020..20425075 | 904..849 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:38:05 has no hits.
BO07555.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:16 Download gff for
BO07555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5282-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:57 Download gff for
BO07555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5282-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:09:41 Download gff for
BO07555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5282-RA | 113..1000 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:41 Download gff for
BO07555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5282-RA | 113..1000 | 17..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:41 Download gff for
BO07555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20425020..20425073 | 851..904 | 100 | <- | Minus |
3L | 20425126..20425959 | 17..850 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:09:41 Download gff for
BO07555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20418120..20418173 | 851..904 | 100 | <- | Minus |
arm_3L | 20418226..20419059 | 17..850 | 99 | | Minus |
BO07555.complete Sequence
1387 bp (1387 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630839
> BO07555.complete
GAAGTTATCAGTCGACATGAATCCCGTACCGAGCCGCGAGTTCCTGGAGG
TTCATCCGCTGCACCAGCATCAACCACACTGTAAGCAGCAATGTTTTGTA
TTCACGGAGATAGCGGACATCGAACTGCCCGCGGAGATAACCAAGTTCGG
AGGTGGAAATGAAAAGATTAGGTGCTCCAACGGGGGCATCCCCACTTACA
GCTCCAAGAAGGACTCCTGCAGCGAGTCCTCTGCGGAGAGACCAGAGAGA
TCACGAGGACGAAAGATTTTGCTGGGCGTTGGTGTGGTGCTCGTGTGCAT
TGCCATGGCGGGTGGTATTCCGCTGGCCCTCCAGTTGCGCTCTTCGTCGC
TCCTGGAGGCCCGACTCGCCTTCATCCGCCGCCTGCTGACGGAGTCTCCA
CTGATCGAGGGCTCGTGGAAGCCACCGAGCACCATGAGCCTGAACAGCAG
CAACCTCTTCGAGGTGCGACAGAATCACATCGGTGCTGTGCTCTGGCCCA
TTGCTGTGCCGTGCGGAGCTCAGTACTTGGATGCCGTGCAGCTCACACTG
GAGGGCATTGATAGGGCCAAGCGGATTACCGCCGCCACAGATTCCATGCA
CATCGTCGAATCAGCTGATGAAATGGAGCAGACTCACATCCGCGGCGAGG
TGGCTGTTCTCATGGGTATCAGTGGTGGCCATGCTCTGGGCACCAGCACG
GCCGTCTTGCGTTCCATCTACCTGCTGGGAGCACGATTCGTCTCGATTAC
GAGCCTGGAGTGCACCACTCCTTGGGCGGCGGCAGCAATCCGGAGACCCG
ATTATCTTGTTGAGGAAAATGTTACGAATTCATTCAACGAATTTGGACAG
ACCATGCTCTTTGAGATGAACCGCCTGGGCATGCTGGTGGAGATTTCGAT
GCTCAGCGAGGCTGCCATGTTGGCTGTTTTGAAAACTGCCAAAGCTCCTG
TTTTACTCACGAATGCCACACCGCTGTCCATGTGCAATAGCAGCAACATT
GCTTCCATTCCAGACCACGTCCTCAGCCTATTGCCGGAAAATGGAGGCGT
AATCTTGCTCAACCTGGAGCGTTGTGGCGATCGGACACTGGGCGTTCGCG
AGGCCATCACTGCAATCAACTATGTGCGCAAGGTAGCCGGAGTGGATCAC
ATTGGACTTGGAGGAGCTCCGAAGAGCTATGCCCTCCTACTTGCCGAACT
GGCAAGGGATAGGGTGTGGGGCAATGCTGCTATTAAGAAGCTGGTTGGGG
GAAATGTGATGCGGATTCTGCGGGAGATCGAGACCCTGAAGAATCGATTG
CCCTTGTATGAGGAGTGGATTCCGCACGAGTCCATCGAAAGCAATTCCTA
TTGCCGATATCCCGAGTCTGCAAGCTTTCTAGACCAT
BO07555.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:18:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5282-RA | 1356 | CG5282-PA | 1..1353 | 17..1369 | 6750 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5282-RA | 1543 | CG5282-RA | 113..1465 | 17..1369 | 6750 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20425126..20425959 | 850..17 | 4155 | 99.9 | Minus |
3L | 28110227 | 3L | 20424502..20424847 | 1369..1024 | 1730 | 100 | Minus |
3L | 28110227 | 3L | 20424898..20425075 | 1026..849 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:18:17 has no hits.
BO07555.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:54 Download gff for
BO07555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5282-RA | 1..1356 | 17..1370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:46 Download gff for
BO07555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5282-RA | 155..1507 | 17..1369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:06 Download gff for
BO07555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5282-RA | 113..1465 | 17..1371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:54 Download gff for
BO07555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5282-RA | 155..1507 | 17..1369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:37 Download gff for
BO07555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5282-RA | 113..1465 | 17..1371 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:37 Download gff for
BO07555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20424500..20424844 | 1027..1371 | 99 | <- | Minus |
3L | 20424898..20425073 | 851..1026 | 100 | <- | Minus |
3L | 20425126..20425959 | 17..850 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:06 Download gff for
BO07555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20417600..20417944 | 1027..1371 | 99 | <- | Minus |
arm_3L | 20417998..20418173 | 851..1026 | 100 | <- | Minus |
arm_3L | 20418226..20419059 | 17..850 | 99 | | Minus |
BO07555.pep Sequence
Translation from 16 to 1387
> BO07555.pep
MNPVPSREFLEVHPLHQHQPHCKQQCFVFTEIADIELPAEITKFGGGNEK
IRCSNGGIPTYSSKKDSCSESSAERPERSRGRKILLGVGVVLVCIAMAGG
IPLALQLRSSSLLEARLAFIRRLLTESPLIEGSWKPPSTMSLNSSNLFEV
RQNHIGAVLWPIAVPCGAQYLDAVQLTLEGIDRAKRITAATDSMHIVESA
DEMEQTHIRGEVAVLMGISGGHALGTSTAVLRSIYLLGARFVSITSLECT
TPWAAAAIRRPDYLVEENVTNSFNEFGQTMLFEMNRLGMLVEISMLSEAA
MLAVLKTAKAPVLLTNATPLSMCNSSNIASIPDHVLSLLPENGGVILLNL
ERCGDRTLGVREAITAINYVRKVAGVDHIGLGGAPKSYALLLAELARDRV
WGNAAIKKLVGGNVMRILREIETLKNRLPLYEEWIPHESIESNSYCRYPE
SASFLDH
BO07555.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5282-PA | 451 | CG5282-PA | 1..451 | 1..451 | 2302 | 100 | Plus |
CG6154-PD | 434 | CG6154-PD | 29..429 | 91..448 | 529 | 32.8 | Plus |
CG6154-PC | 434 | CG6154-PC | 29..429 | 91..448 | 529 | 32.8 | Plus |
CG42750-PC | 1067 | CG42750-PC | 645..1040 | 69..426 | 501 | 32.9 | Plus |
CG42750-PB | 1068 | CG42750-PB | 646..1041 | 69..426 | 501 | 32.9 | Plus |