Clone BO07555 Report

Search the DGRC for BO07555

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG5282-RA
Protein status:BO07555.pep: validated full length
Sequenced Size:1387

Clone Sequence Records

BO07555.3prime Sequence

926 bp (817 high quality bases) assembled on 2006-01-06

> BO07555.3prime
ATGGTCTAGAAAGCTTGCAGACTCGGGATATCGGCAATAGGAATTGCTTT
CGATGGACTCGTGCGGAATCCACTCCTCATACAAGGGCAATCGATTCTTC
AGGGTCTCGATCTCCCGCAGAATCCGCATCACATTTCCCCCAACCAGCTT
CTTAATAGCAGCATTGCCCCACACCCTATCCCTTGCCAGTTCGGCAAGTA
GGAGGGCATAGCTCTTCGGAGCTCCTCCAAGTCCAATGTGATCCACTCCG
GCTACCTTGCGCACATAGTTGATTGCAGTGATGGCCTCGCGAACGCCCAG
TGTCCGATCGCCACAACGCTCCAGGTTGAGCAAGATTACGCCTCCATTTT
CCGGCAATAGGCTGAGGACGTGGTCTGGAATGGAAGCAATGTTGCTGCTA
TTGCACATGGACAGCGGTGTGGCATTCGTGAGTAAAACAGGAGCTTTGGC
AGTTTTCAAAACAGCCAACATGGCAGCCTCGCTGAGCATCGAAATCTCCA
CCAGCATGCCCAGGCGGTTCATCTCAAAGAGCATGGTCTGTCCAAATTCG
TTGAATGAATTCGTAACATTTTCCTCAACAAGATAATCGGGTCTCCGGAT
TGCTGCCGCCGCCCAAGGAGTGGTGCACTCCAGGCTCGTAATCGAGACGA
ATCGTGCTCCCAGCAGGTAGATGGAACGCAAGACGGCCGTGCTGGTGCCC
AGAGCATGGCCACCACTGATACCCATGAGAACAGCCACCTCGCCGCGGAT
GTGAGTCTGCTCCATTTCATCAGCTGATTCGACGATGTGCATGGAATCTG
TGGCGGCGGTAATCCGCTTGGCCCTATCAATGCCCTCCAGTGTGAGCTGC
ACGGCATCAAAGTACTGAGCTCCGCACGGCACAGCAATGGGCCAGAGCAC
AGCACCGATGTGATTCTGTCGCACCT

BO07555.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5282-PA 1356 CG5282-RA 446..1353 926..19 4515 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5282-RA 1543 CG5282-RA 558..1465 926..19 4525 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20425126..20425514 538..926 1930 99.7 Plus
3L 28110227 3L 20424502..20424847 19..364 1730 100 Plus
3L 28110227 3L 20424898..20425075 362..539 890 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:15:19 has no hits.

BO07555.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:15 Download gff for BO07555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5282-PA 446..1356 18..926 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:55 Download gff for BO07555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5282-PA 446..1356 18..926 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:42 Download gff for BO07555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 558..1465 19..926 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:27 Download gff for BO07555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 558..1465 19..926 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:27 Download gff for BO07555.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20424502..20424844 19..361 100 <- Plus
3L 20424898..20425073 362..537 100 <- Plus
3L 20425126..20425514 538..926 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:42 Download gff for BO07555.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20417602..20417944 19..361 100 <- Plus
arm_3L 20417998..20418173 362..537 100 <- Plus
arm_3L 20418226..20418614 538..926 99   Plus

BO07555.5prime Sequence

904 bp (812 high quality bases) assembled on 2006-01-06

> BO07555.5prime
GAAGTTATCAGTCGACATGAATCCCGTACCGAGCCGCGAGTTCCTGGAGG
TTCATCCGCTGCACCAGCATCAACCACACTGTAAGCAGCAATGTTTTGTA
TTCACGGAGATAGCGGACATCGAACTGCCCGCGGAGATAACCAAGTTCGG
AGGTGGAAATGAAAAGATTAGGTGCTCCAACGGGGGCATCCCCACTTACA
GCTCCAAGAAGGACTCCTGCAGCGAGTCCTCTGCGGAGAGACCAGAGAGA
TCACGAGGACGAAAGATTTTGCTGGGCGTTGGTGTGGTGCTCGTGTGCAT
TGCCATGGCGGGTGGTATTCCGCTGGCCCTCCAGTTGCGCTCTTCGTCGC
TCCTGGAGGCCCGACTCGCCTTCATCCGCCGCCTGCTGACGGAGTCTCCA
CTGATCGAGGGCTCGTGGAAGCCACCGAGCACCATGAGCCTGAACAGCAG
CAACCTCTTCGAGGTGCGACAGAATCACATCGGTGCTGTGCTCTGGCCCA
TTGCTGTGCCGTGCGGAGCTCAGTACTTGGATGCCGTGCAGCTCACACTG
GAGGGCATTGATAGGGCCAAGCGGATTACCGCCGCCACAGATTCCATGCA
CATCGTCGAATCAGCTGATGAAATGGAGCAGACTCACATCCGCGGCGAGG
TGGCTGTTCTCATGGGTATCAGTGGTGGCCATGCTCTGGGCACCAGCACG
GCCGTCTTGCGTTCCATCTACCTGCTGGGAGCACGATTCGTCTCGATTAC
GAGCCTGGAGTGCACCACTCCTTGGGCGGCGGCAGCAATCCGGAGACCCG
ATTATCTTGTTGAGGAAAATGTTACGAATTCATTTCACGAATTTGGACAG
ACCATGCTCTTTGAGATGAACCGCCTGGGCATGCTGGTGGAGATTTCGAT
GCTC

BO07555.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5282-PA 1356 CG5282-RA 1..888 17..904 4365 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5282-RA 1543 CG5282-RA 113..1000 17..904 4395 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20425126..20425959 850..17 4125 99.6 Minus
3L 28110227 3L 20425020..20425075 904..849 280 100 Minus
Blast to na_te.dros performed on 2015-02-09 19:38:05 has no hits.

BO07555.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:16 Download gff for BO07555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5282-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:57 Download gff for BO07555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5282-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:09:41 Download gff for BO07555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 113..1000 17..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:41 Download gff for BO07555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 113..1000 17..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:41 Download gff for BO07555.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20425020..20425073 851..904 100 <- Minus
3L 20425126..20425959 17..850 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:09:41 Download gff for BO07555.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20418120..20418173 851..904 100 <- Minus
arm_3L 20418226..20419059 17..850 99   Minus

BO07555.complete Sequence

1387 bp (1387 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630839

> BO07555.complete
GAAGTTATCAGTCGACATGAATCCCGTACCGAGCCGCGAGTTCCTGGAGG
TTCATCCGCTGCACCAGCATCAACCACACTGTAAGCAGCAATGTTTTGTA
TTCACGGAGATAGCGGACATCGAACTGCCCGCGGAGATAACCAAGTTCGG
AGGTGGAAATGAAAAGATTAGGTGCTCCAACGGGGGCATCCCCACTTACA
GCTCCAAGAAGGACTCCTGCAGCGAGTCCTCTGCGGAGAGACCAGAGAGA
TCACGAGGACGAAAGATTTTGCTGGGCGTTGGTGTGGTGCTCGTGTGCAT
TGCCATGGCGGGTGGTATTCCGCTGGCCCTCCAGTTGCGCTCTTCGTCGC
TCCTGGAGGCCCGACTCGCCTTCATCCGCCGCCTGCTGACGGAGTCTCCA
CTGATCGAGGGCTCGTGGAAGCCACCGAGCACCATGAGCCTGAACAGCAG
CAACCTCTTCGAGGTGCGACAGAATCACATCGGTGCTGTGCTCTGGCCCA
TTGCTGTGCCGTGCGGAGCTCAGTACTTGGATGCCGTGCAGCTCACACTG
GAGGGCATTGATAGGGCCAAGCGGATTACCGCCGCCACAGATTCCATGCA
CATCGTCGAATCAGCTGATGAAATGGAGCAGACTCACATCCGCGGCGAGG
TGGCTGTTCTCATGGGTATCAGTGGTGGCCATGCTCTGGGCACCAGCACG
GCCGTCTTGCGTTCCATCTACCTGCTGGGAGCACGATTCGTCTCGATTAC
GAGCCTGGAGTGCACCACTCCTTGGGCGGCGGCAGCAATCCGGAGACCCG
ATTATCTTGTTGAGGAAAATGTTACGAATTCATTCAACGAATTTGGACAG
ACCATGCTCTTTGAGATGAACCGCCTGGGCATGCTGGTGGAGATTTCGAT
GCTCAGCGAGGCTGCCATGTTGGCTGTTTTGAAAACTGCCAAAGCTCCTG
TTTTACTCACGAATGCCACACCGCTGTCCATGTGCAATAGCAGCAACATT
GCTTCCATTCCAGACCACGTCCTCAGCCTATTGCCGGAAAATGGAGGCGT
AATCTTGCTCAACCTGGAGCGTTGTGGCGATCGGACACTGGGCGTTCGCG
AGGCCATCACTGCAATCAACTATGTGCGCAAGGTAGCCGGAGTGGATCAC
ATTGGACTTGGAGGAGCTCCGAAGAGCTATGCCCTCCTACTTGCCGAACT
GGCAAGGGATAGGGTGTGGGGCAATGCTGCTATTAAGAAGCTGGTTGGGG
GAAATGTGATGCGGATTCTGCGGGAGATCGAGACCCTGAAGAATCGATTG
CCCTTGTATGAGGAGTGGATTCCGCACGAGTCCATCGAAAGCAATTCCTA
TTGCCGATATCCCGAGTCTGCAAGCTTTCTAGACCAT

BO07555.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5282-RA 1356 CG5282-PA 1..1353 17..1369 6750 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5282-RA 1543 CG5282-RA 113..1465 17..1369 6750 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20425126..20425959 850..17 4155 99.9 Minus
3L 28110227 3L 20424502..20424847 1369..1024 1730 100 Minus
3L 28110227 3L 20424898..20425075 1026..849 890 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:18:17 has no hits.

BO07555.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:54 Download gff for BO07555.complete
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 1..1356 17..1370 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:46 Download gff for BO07555.complete
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 155..1507 17..1369 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:06 Download gff for BO07555.complete
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 113..1465 17..1371 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:54 Download gff for BO07555.complete
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 155..1507 17..1369 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:37 Download gff for BO07555.complete
Subject Subject Range Query Range Percent Splice Strand
CG5282-RA 113..1465 17..1371 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:37 Download gff for BO07555.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20424500..20424844 1027..1371 99 <- Minus
3L 20424898..20425073 851..1026 100 <- Minus
3L 20425126..20425959 17..850 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:06 Download gff for BO07555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20417600..20417944 1027..1371 99 <- Minus
arm_3L 20417998..20418173 851..1026 100 <- Minus
arm_3L 20418226..20419059 17..850 99   Minus

BO07555.pep Sequence

Translation from 16 to 1387

> BO07555.pep
MNPVPSREFLEVHPLHQHQPHCKQQCFVFTEIADIELPAEITKFGGGNEK
IRCSNGGIPTYSSKKDSCSESSAERPERSRGRKILLGVGVVLVCIAMAGG
IPLALQLRSSSLLEARLAFIRRLLTESPLIEGSWKPPSTMSLNSSNLFEV
RQNHIGAVLWPIAVPCGAQYLDAVQLTLEGIDRAKRITAATDSMHIVESA
DEMEQTHIRGEVAVLMGISGGHALGTSTAVLRSIYLLGARFVSITSLECT
TPWAAAAIRRPDYLVEENVTNSFNEFGQTMLFEMNRLGMLVEISMLSEAA
MLAVLKTAKAPVLLTNATPLSMCNSSNIASIPDHVLSLLPENGGVILLNL
ERCGDRTLGVREAITAINYVRKVAGVDHIGLGGAPKSYALLLAELARDRV
WGNAAIKKLVGGNVMRILREIETLKNRLPLYEEWIPHESIESNSYCRYPE
SASFLDH

BO07555.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5282-PA 451 CG5282-PA 1..451 1..451 2302 100 Plus
CG6154-PD 434 CG6154-PD 29..429 91..448 529 32.8 Plus
CG6154-PC 434 CG6154-PC 29..429 91..448 529 32.8 Plus
CG42750-PC 1067 CG42750-PC 645..1040 69..426 501 32.9 Plus
CG42750-PB 1068 CG42750-PB 646..1041 69..426 501 32.9 Plus