Clone BO07559 Report

Search the DGRC for BO07559

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG7772-RA
Protein status:BO07559.pep: validated full length
Sequenced Size:526

Clone Sequence Records

BO07559.5prime Sequence

524 bp (523 high quality bases) assembled on 2006-01-06

> BO07559.5prime
GAAGTTATCAGTCGACATGTCGGAGGACAAACAGTTCATCCGCCGGGATA
AGGGCACCAAGAAAACTTCCACGTCTTTGAAGGAGGTGGACATCTACCGG
GACACCTTCATTCGCTATATGGGCTACAGCAACGAGATTGGCGAGTCCTT
CCGCCCGCTGGTGCCCAAGTCTCTGGTGGCCGCATCCTACGGCATGGCCA
TCGGATACGTCTGCACGGACACTTTTGACAAGGCACTGCGCCTCCAAATG
GAGGGCGCTTCCTCCAGAGAAGTGGCCGTCAAGGGCGGCGACGTCTTCTG
CTGGCAGATGCTGGCCTCCGTCGCCATTCCCGGCCTGGTCATCAATCGGA
TCACCTGGGCCACCAAAACACTGCTGAGCAAAGCGCCTATGCCCGTGCTA
AAGACGGTGCCCACCCTGGTGGGTCTGGCCAGCATACCGCTTATCATCCA
TCCCATTGACAGCATGGTTGACCGCCTGATGGACGCCACCTACCGCAAGA
CGGTGCGGGCAAGCTTTCTAGACC

BO07559.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7772-PA 495 CG7772-RA 1..492 17..508 2460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7772-RA 843 CG7772-RA 205..696 17..508 2460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17906652..17906879 349..122 1140 100 Minus
X 23542271 X 17906178..17906338 508..348 805 100 Minus
X 23542271 X 17906951..17907057 123..17 535 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:02:34 has no hits.

BO07559.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:24 Download gff for BO07559.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7772-PA 1..495 17..509 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:08 Download gff for BO07559.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7772-PA 1..495 17..509 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:45:29 Download gff for BO07559.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 198..696 7..508 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:00:27 Download gff for BO07559.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 198..696 7..508 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:00:27 Download gff for BO07559.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17906653..17906878 123..348 100 <- Minus
X 17906952..17907064 7..122 96   Minus
X 17906178..17906337 349..508 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:45:29 Download gff for BO07559.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17800211..17800370 349..508 100 <- Minus
arm_X 17800686..17800911 123..348 100 <- Minus
arm_X 17800985..17801097 7..122 96   Minus

BO07559.3prime Sequence

524 bp (523 high quality bases) assembled on 2006-01-06

> BO07559.3prime
ATGGTCTAGAAAGCTTGCCCGCACCGTCTTGCGGTAGGTGGCGTCCATCA
GGCGGTCAACCATGCTGTCAATGGGATGGATGATAAGCGGTATGCTGGCC
AGACCCACCAGGGTGGGCACCGTCTTTAGCACGGGCATAGGCGCTTTGCT
CAGCAGTGTTTTGGTGGCCCAGGTGATCCGATTGATGACCAGGCCGGGAA
TGGCGACGGAGGCCAGCATCTGCCAGCAGAAGACGTCGCCGCCCTTGACG
GCCACTTCTCTGGAGGAAGCGCCCTCCATTTGGAGGCGCAGTGCCTTGTC
AAAAGTGTCCGTGCAGACGTATCCGATGGCCATGCCGTAGGATGCGGCCA
CCAGAGACTTGGGCACCAGCGGGCGGAAGGACTCGCCAATCTCGTTGCTG
TAGCCCATATAGCGAATGAAGGTGTCCCGGTAGATGTCCACCTCCTTCAA
AGACGTGGAAGTTTTCTTGGTGCCCTTATCCCGGCGGATGAACTGTTTGT
CCTCCGACATGTCGACTGATAACT

BO07559.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7772-PA 495 CG7772-RA 1..492 510..19 2460 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7772-RA 843 CG7772-RA 205..696 510..19 2460 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17906652..17906879 178..405 1140 100 Plus
X 23542271 X 17906178..17906338 19..179 805 100 Plus
X 23542271 X 17906951..17907057 404..510 535 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:25:38 has no hits.

BO07559.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:23 Download gff for BO07559.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7772-PA 1..495 18..510 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:06 Download gff for BO07559.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7772-PA 1..495 18..510 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:57 Download gff for BO07559.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 198..696 19..520 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:55:10 Download gff for BO07559.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 198..696 19..520 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:55:10 Download gff for BO07559.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17906178..17906337 19..178 100 <- Plus
X 17906653..17906878 179..404 100 <- Plus
X 17906952..17907064 405..520 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:57 Download gff for BO07559.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17800211..17800370 19..178 100 <- Plus
arm_X 17800686..17800911 179..404 100 <- Plus
arm_X 17800985..17801097 405..520 96   Plus

BO07559.complete Sequence

526 bp (526 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ638652

> BO07559.complete
GAAGTTATCAGTCGACATGTCGGAGGACAAACAGTTCATCCGCCGGGATA
AGGGCACCAAGAAAACTTCCACGTCTTTGAAGGAGGTGGACATCTACCGG
GACACCTTCATTCGCTATATGGGCTACAGCAACGAGATTGGCGAGTCCTT
CCGCCCGCTGGTGCCCAAGTCTCTGGTGGCCGCATCCTACGGCATGGCCA
TCGGATACGTCTGCACGGACACTTTTGACAAGGCACTGCGCCTCCAAATG
GAGGGCGCTTCCTCCAGAGAAGTGGCCGTCAAGGGCGGCGACGTCTTCTG
CTGGCAGATGCTGGCCTCCGTCGCCATTCCCGGCCTGGTCATCAATCGGA
TCACCTGGGCCACCAAAACACTGCTGAGCAAAGCGCCTATGCCCGTGCTA
AAGACGGTGCCCACCCTGGTGGGTCTGGCCAGCATACCGCTTATCATCCA
TCCCATTGACAGCATGGTTGACCGCCTGATGGACGCCACCTACCGCAAGA
CGGTGCGGGCAAGCTTTCTAGACCAT

BO07559.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7772-RA 495 CG7772-PA 1..492 17..508 2460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7772-RA 843 CG7772-RA 205..696 17..508 2460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17906652..17906879 349..122 1140 100 Minus
X 23542271 X 17906178..17906338 508..348 805 100 Minus
X 23542271 X 17906951..17907057 123..17 535 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:15:40 has no hits.

BO07559.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:28 Download gff for BO07559.complete
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 1..495 17..509 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:53 Download gff for BO07559.complete
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 221..719 7..508 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:10 Download gff for BO07559.complete
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 205..696 17..510 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:28 Download gff for BO07559.complete
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 221..719 7..508 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:16 Download gff for BO07559.complete
Subject Subject Range Query Range Percent Splice Strand
CG7772-RA 205..696 17..510 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:16 Download gff for BO07559.complete
Subject Subject Range Query Range Percent Splice Strand
X 17906952..17907057 17..122 100   Minus
X 17906176..17906337 349..510 98 <- Minus
X 17906653..17906878 123..348 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:10 Download gff for BO07559.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17800209..17800370 349..510 98 <- Minus
arm_X 17800686..17800911 123..348 100 <- Minus
arm_X 17800985..17801090 17..122 100   Minus

BO07559.pep Sequence

Translation from 16 to 526

> BO07559.pep
MSEDKQFIRRDKGTKKTSTSLKEVDIYRDTFIRYMGYSNEIGESFRPLVP
KSLVAASYGMAIGYVCTDTFDKALRLQMEGASSREVAVKGGDVFCWQMLA
SVAIPGLVINRITWATKTLLSKAPMPVLKTVPTLVGLASIPLIIHPIDSM
VDRLMDATYRKTVRASFLDH

BO07559.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7772-PA 164 CG7772-PA 1..164 1..164 833 100 Plus