Clone Sequence Records
BO07559.5prime Sequence
524 bp (523 high quality bases) assembled on 2006-01-06
> BO07559.5prime
GAAGTTATCAGTCGACATGTCGGAGGACAAACAGTTCATCCGCCGGGATA
AGGGCACCAAGAAAACTTCCACGTCTTTGAAGGAGGTGGACATCTACCGG
GACACCTTCATTCGCTATATGGGCTACAGCAACGAGATTGGCGAGTCCTT
CCGCCCGCTGGTGCCCAAGTCTCTGGTGGCCGCATCCTACGGCATGGCCA
TCGGATACGTCTGCACGGACACTTTTGACAAGGCACTGCGCCTCCAAATG
GAGGGCGCTTCCTCCAGAGAAGTGGCCGTCAAGGGCGGCGACGTCTTCTG
CTGGCAGATGCTGGCCTCCGTCGCCATTCCCGGCCTGGTCATCAATCGGA
TCACCTGGGCCACCAAAACACTGCTGAGCAAAGCGCCTATGCCCGTGCTA
AAGACGGTGCCCACCCTGGTGGGTCTGGCCAGCATACCGCTTATCATCCA
TCCCATTGACAGCATGGTTGACCGCCTGATGGACGCCACCTACCGCAAGA
CGGTGCGGGCAAGCTTTCTAGACC
BO07559.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7772-PA | 495 | CG7772-RA | 1..492 | 17..508 | 2460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7772-RA | 843 | CG7772-RA | 205..696 | 17..508 | 2460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17906652..17906879 | 349..122 | 1140 | 100 | Minus |
X | 23542271 | X | 17906178..17906338 | 508..348 | 805 | 100 | Minus |
X | 23542271 | X | 17906951..17907057 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:02:34 has no hits.
BO07559.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:24 Download gff for
BO07559.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-PA | 1..495 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:08 Download gff for
BO07559.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-PA | 1..495 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:45:29 Download gff for
BO07559.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 198..696 | 7..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:00:27 Download gff for
BO07559.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 198..696 | 7..508 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:00:27 Download gff for
BO07559.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17906653..17906878 | 123..348 | 100 | <- | Minus |
X | 17906952..17907064 | 7..122 | 96 | | Minus |
X | 17906178..17906337 | 349..508 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:45:29 Download gff for
BO07559.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17800211..17800370 | 349..508 | 100 | <- | Minus |
arm_X | 17800686..17800911 | 123..348 | 100 | <- | Minus |
arm_X | 17800985..17801097 | 7..122 | 96 | | Minus |
BO07559.3prime Sequence
524 bp (523 high quality bases) assembled on 2006-01-06
> BO07559.3prime
ATGGTCTAGAAAGCTTGCCCGCACCGTCTTGCGGTAGGTGGCGTCCATCA
GGCGGTCAACCATGCTGTCAATGGGATGGATGATAAGCGGTATGCTGGCC
AGACCCACCAGGGTGGGCACCGTCTTTAGCACGGGCATAGGCGCTTTGCT
CAGCAGTGTTTTGGTGGCCCAGGTGATCCGATTGATGACCAGGCCGGGAA
TGGCGACGGAGGCCAGCATCTGCCAGCAGAAGACGTCGCCGCCCTTGACG
GCCACTTCTCTGGAGGAAGCGCCCTCCATTTGGAGGCGCAGTGCCTTGTC
AAAAGTGTCCGTGCAGACGTATCCGATGGCCATGCCGTAGGATGCGGCCA
CCAGAGACTTGGGCACCAGCGGGCGGAAGGACTCGCCAATCTCGTTGCTG
TAGCCCATATAGCGAATGAAGGTGTCCCGGTAGATGTCCACCTCCTTCAA
AGACGTGGAAGTTTTCTTGGTGCCCTTATCCCGGCGGATGAACTGTTTGT
CCTCCGACATGTCGACTGATAACT
BO07559.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7772-PA | 495 | CG7772-RA | 1..492 | 510..19 | 2460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:25:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7772-RA | 843 | CG7772-RA | 205..696 | 510..19 | 2460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17906652..17906879 | 178..405 | 1140 | 100 | Plus |
X | 23542271 | X | 17906178..17906338 | 19..179 | 805 | 100 | Plus |
X | 23542271 | X | 17906951..17907057 | 404..510 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:25:38 has no hits.
BO07559.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:23 Download gff for
BO07559.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-PA | 1..495 | 18..510 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:06 Download gff for
BO07559.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-PA | 1..495 | 18..510 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:57 Download gff for
BO07559.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 198..696 | 19..520 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:55:10 Download gff for
BO07559.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 198..696 | 19..520 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:55:10 Download gff for
BO07559.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17906178..17906337 | 19..178 | 100 | <- | Plus |
X | 17906653..17906878 | 179..404 | 100 | <- | Plus |
X | 17906952..17907064 | 405..520 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:57 Download gff for
BO07559.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17800211..17800370 | 19..178 | 100 | <- | Plus |
arm_X | 17800686..17800911 | 179..404 | 100 | <- | Plus |
arm_X | 17800985..17801097 | 405..520 | 96 | | Plus |
BO07559.complete Sequence
526 bp (526 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ638652
> BO07559.complete
GAAGTTATCAGTCGACATGTCGGAGGACAAACAGTTCATCCGCCGGGATA
AGGGCACCAAGAAAACTTCCACGTCTTTGAAGGAGGTGGACATCTACCGG
GACACCTTCATTCGCTATATGGGCTACAGCAACGAGATTGGCGAGTCCTT
CCGCCCGCTGGTGCCCAAGTCTCTGGTGGCCGCATCCTACGGCATGGCCA
TCGGATACGTCTGCACGGACACTTTTGACAAGGCACTGCGCCTCCAAATG
GAGGGCGCTTCCTCCAGAGAAGTGGCCGTCAAGGGCGGCGACGTCTTCTG
CTGGCAGATGCTGGCCTCCGTCGCCATTCCCGGCCTGGTCATCAATCGGA
TCACCTGGGCCACCAAAACACTGCTGAGCAAAGCGCCTATGCCCGTGCTA
AAGACGGTGCCCACCCTGGTGGGTCTGGCCAGCATACCGCTTATCATCCA
TCCCATTGACAGCATGGTTGACCGCCTGATGGACGCCACCTACCGCAAGA
CGGTGCGGGCAAGCTTTCTAGACCAT
BO07559.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7772-RA | 495 | CG7772-PA | 1..492 | 17..508 | 2460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7772-RA | 843 | CG7772-RA | 205..696 | 17..508 | 2460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17906652..17906879 | 349..122 | 1140 | 100 | Minus |
X | 23542271 | X | 17906178..17906338 | 508..348 | 805 | 100 | Minus |
X | 23542271 | X | 17906951..17907057 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:15:40 has no hits.
BO07559.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:28 Download gff for
BO07559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 1..495 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:53 Download gff for
BO07559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 221..719 | 7..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:10 Download gff for
BO07559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 205..696 | 17..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:28 Download gff for
BO07559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 221..719 | 7..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:16 Download gff for
BO07559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7772-RA | 205..696 | 17..510 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:16 Download gff for
BO07559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17906952..17907057 | 17..122 | 100 | | Minus |
X | 17906176..17906337 | 349..510 | 98 | <- | Minus |
X | 17906653..17906878 | 123..348 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:10 Download gff for
BO07559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17800209..17800370 | 349..510 | 98 | <- | Minus |
arm_X | 17800686..17800911 | 123..348 | 100 | <- | Minus |
arm_X | 17800985..17801090 | 17..122 | 100 | | Minus |
BO07559.pep Sequence
Translation from 16 to 526
> BO07559.pep
MSEDKQFIRRDKGTKKTSTSLKEVDIYRDTFIRYMGYSNEIGESFRPLVP
KSLVAASYGMAIGYVCTDTFDKALRLQMEGASSREVAVKGGDVFCWQMLA
SVAIPGLVINRITWATKTLLSKAPMPVLKTVPTLVGLASIPLIIHPIDSM
VDRLMDATYRKTVRASFLDH
BO07559.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7772-PA | 164 | CG7772-PA | 1..164 | 1..164 | 833 | 100 | Plus |