Clone Sequence Records
BO07565.3prime Sequence
971 bp (791 high quality bases) assembled on 2006-01-06
> BO07565.3prime
ATGGTCTAGAAAGCTTGCTATCTTAATCAGATTATTATTGATGTTCTGCT
GGCGTTTGCGCTTTGCATTCATGGCGTCAACAATTGGCTGCCGCTTGGCA
TTGTATTTCTTGTTTAGCTGTTCGATCTCCAGCTCCATTTCGTGATCGAT
GTTGCACAGCCGCTGGTTCAGATCGTCGAAGGTAAGGAACTTGAGGAACT
CAAACTCACCCTCAACATAGGCGTGCGATTGCGTATGCATATGCTGATTC
TGATATGCGGGCGGCGGTTGAGCCGGAGCCGCTGCCGGTATTCCCTGCTG
TCCCATTGGCGCAGCGTTGCTGAGCAGCAGATTCGGTTGATTGTTGAGCG
CGATGAGTTGTTCGTTCATCAGGGGATAAGCCATCAGAACTTGCTGCTGC
TGCTGGTGCTGCTGCAGACCATACTGATTAATGGCGGAGATCTGCTGGAA
CTGCATTTCCATGTTGTGCTCCCAGTTGTTCAAATCGTTGGCCCCGCTTG
CCAGATGCTGTTCATCCTGCTGTTGTTGTTGCTGCTGCTGTTGTTGTTGT
TGTTGCTGCTCCGCTGCTGCCGGAGAATACTCTGTGGCTATGGGTTTTTC
ATCGCCACGGCCATCTCCCGCATTTTTGCGATCGAAGTGCTCCAGGAACT
GCGGCCTGTAGCGGTTTCGCGGCTTCTGGTCGTCGTTGTTTTTGGCCGTT
GTGGAGTCGTCCGAATCGGAGTTGATTACCATAGTGCCCAAGTTCGACTC
CAGCTCCACCATTGTGCCGCTGTCAACTGCCGGCATGTCCAGAGGAGATG
CTGCCGAAGAGGCCGCTGCAGGAGCAGCTGCCTTGGACAGGTTCCTTAGT
CCACCCGGCCCCAAGTGCCCTCATCCACACCTTGCTCTGCATGCGCTATC
ATGGTGGCATCTGAAGCTGAGCTCTGTTGGTATCACCGAACTTCTCCGGC
ACCAGAGTACCTGGAATCTCC
BO07565.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11228-PA | 2010 | hpo-RA | 1162..2007 | 864..19 | 4205 | 99.8 | Minus |
| CG11228-PA | 2010 | hpo-RA | 1092..1162 | 933..863 | 330 | 98.5 | Minus |
| CG11228-PA | 2010 | hpo-RA | 1059..1091 | 965..933 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hpo-RB | 2804 | CG11228-RB | 1167..2115 | 965..19 | 4665 | 99.6 | Minus |
| hpo-RA | 2503 | CG11228-RA | 1167..2115 | 965..19 | 4665 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19494685..19495404 | 19..738 | 3585 | 99.9 | Plus |
| 2R | 25286936 | 2R | 19495460..19495690 | 737..965 | 1040 | 98.7 | Plus |
Blast to na_te.dros performed 2015-02-10 15:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| diver2 | 4917 | diver2 DIVER2 4917bp | 4015..4057 | 190..148 | 116 | 74.4 | Minus |
BO07565.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:33 Download gff for
BO07565.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-PA | 1053..2010 | 18..971 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:20 Download gff for
BO07565.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11228-PA | 1053..2010 | 18..971 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:07:06 Download gff for
BO07565.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 1161..2115 | 19..971 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:30 Download gff for
BO07565.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 1161..2115 | 19..971 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:30 Download gff for
BO07565.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19494685..19495403 | 19..737 | 99 | <- | Plus |
| 2R | 19495461..19495696 | 738..971 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:07:06 Download gff for
BO07565.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15382190..15382908 | 19..737 | 99 | <- | Plus |
| arm_2R | 15382966..15383201 | 738..971 | 97 | | Plus |
BO07565.5prime Sequence
826 bp (763 high quality bases) assembled on 2006-01-06
> BO07565.5prime
GAAGTTATCAGTCGACATGTCTGAGCCAGAGGTGACCAGCGTTGTAGATA
TGAAATCGCCCAACATATCCTCCTCCTGCTCCTTCTTCAAGCTGAAGAAG
CTGTCGGAGGAGTCGCTTCTGCAGCCGCCGGAAAAGGTCTTCGACATTAT
GTACAAGCTGGGCGAGGGCAGCTATGGATCAGTCTACAAGGCAGTGCACA
AGGAAAGCAGCTCCATTGTGGCCATCAAGCTGGTGCCGGTGGAGTCCGAC
CTGCACGAGATTATTAAGGAGATATCCATTATGCAACAATGCGACTCGCC
GTATGTGGTGCGCTATTACGGCTCCTACTTCAAGCAGTATGACCTGTGGA
TCTGCATGGAGTACTGTGGCGCCGGCAGCGTCTCCGACATTATGCGTCTG
CGCAAAAAGACGCTGACGGAGGACGAGATAGCCACTATTCTGTCGGACAC
TCTGCAGGGCTTGGTCTATCTGCATCTGCGTCGCAAGATCCATCGCGACA
TCAAGGCGGCCAACATCCTGCTCAATACCGAAGGCTATGCTAAGTTGGCC
GATTTCGGAGTCGCTGGTCAGCTCACGGACACAATGGCCAAGAGAAACAC
TGTGATCGGAACGCCCTTCTGGATGGCCCCCGAGGTGATTGAGGAGATTG
GCTACGACTGTGTGGCAGACATATGGTCATTGGGCATCACCGCCTTGGAA
ATGGCCGAGGGAAAGCCCCCATACGGTGAGATCCATCCCATGCGAGCCAT
CTTTATGATTCCGCAGAAGCCACCACCATCGTTCCGGGAACCGGATCGCT
GGAGCACAGAGTTCATTGACTTCGTG
BO07565.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11228-PA | 2010 | hpo-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hpo-RB | 2804 | CG11228-RB | 109..918 | 17..826 | 4050 | 100 | Plus |
| hpo-RA | 2503 | CG11228-RA | 109..918 | 17..826 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19495939..19496748 | 826..17 | 4050 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:32:07 has no hits.
BO07565.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:34 Download gff for
BO07565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:21 Download gff for
BO07565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11228-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:08 Download gff for
BO07565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 104..918 | 8..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:10 Download gff for
BO07565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 104..918 | 8..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:10 Download gff for
BO07565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19495939..19496753 | 8..826 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:08 Download gff for
BO07565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15383444..15384258 | 8..826 | 99 | | Minus |
BO07565.complete Sequence
2041 bp (2041 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630841
> BO07565.complete
GAAGTTATCAGTCGACATGTCTGAGCCAGAGGTGACCAGCGTTGTAGATA
TGAAATCGCCCAACATATCCTCCTCCTGCTCCTTCTTCAAGCTGAAGAAG
CTGTCGGAGGAGTCGCTTCTGCAGCCGCCGGAAAAGGTCTTCGACATTAT
GTACAAGCTGGGCGAGGGCAGCTATGGATCAGTCTACAAGGCAGTGCACA
AGGAAAGCAGCTCCATTGTGGCCATCAAGCTGGTGCCGGTGGAGTCCGAC
CTGCACGAGATTATTAAGGAGATATCCATTATGCAACAATGCGACTCGCC
GTATGTGGTGCGCTATTACGGCTCCTACTTCAAGCAGTATGACCTGTGGA
TCTGCATGGAGTACTGTGGCGCCGGCAGCGTCTCCGACATTATGCGTCTG
CGCAAAAAGACGCTGACGGAGGACGAGATAGCCACTATTCTGTCGGACAC
TCTGCAGGGCTTGGTCTATCTGCATCTGCGTCGCAAGATCCATCGCGACA
TCAAGGCGGCCAACATCCTGCTCAATACCGAAGGCTATGCTAAGTTGGCC
GATTTCGGAGTCGCTGGTCAGCTCACGGACACAATGGCCAAGAGAAACAC
TGTGATCGGAACGCCCTTCTGGATGGCCCCCGAGGTGATTGAGGAGATTG
GCTACGACTGTGTGGCAGACATATGGTCATTGGGCATCACCGCCTTGGAA
ATGGCCGAGGGAAAGCCCCCATACGGTGAGATCCATCCCATGCGAGCCAT
CTTTATGATTCCGCAGAAGCCACCACCATCGTTCCGGGAACCGGATCGCT
GGAGCACAGAGTTCATTGACTTCGTGAGCAAGTGCCTGGTAAAGGAGCCA
GACGACCGGGCAACGGCCACTGAACTGCTGGAGCACGAGTTCATACGCAA
CGCCAAGCACCGATCGATCCTAAAGCCTATGCTTGAGGAGACCTGTGCCA
TTCGCGAGCAGCAACGCGCCAATCGCAGTTTTGGGGGCGTGTTGGCTGCT
AGTCAGGCGAAGAGCTTGGCAACCCAGGAAAACGGAATGCAACAACACAT
CACGGACAACGCGTTTATGGAGGATCCAGGTACTCTGGTGCCGGAGAAGT
TCGGTGAATACCAACAGAGCTCAGCCTCAGATGCCACCATGATAGCGCAT
GCAGAGCAAGGTGTGGATGAGGGCACTTTGGGGCCGGGTGGACTAAGGAA
CCTGTCCAAGGCAGCTGCTCCTGCAGCGGCCTCTTCGGCAGCATCTCCTC
TGGACATGCCGGCAGTTGACAGCGGCACAATGGTGGAGCTGGAGTCGAAC
TTGGGCACTATGGTAATCAACTCCGATTCGGACGACTCCACAACGGCCAA
AAACAACGACGACCAGAAGCCGCGAAACCGCTACAGGCCGCAGTTCCTGG
AGCACTTCGATCGCAAAAATGCGGGAGATGGCCGTGGCGATGAAAAACCC
ATAGCCACAGAGTATTCTCCGGCAGCAGCGGAGCAGCAACAACAACAACA
ACAGCAGCAGCAACAACAACAGCAGGATGAACAGCATCTGGCAAGCGGGG
CCAACGATTTGAACAACTGGGAGCACAACATGGAAATGCAGTTCCAGCAG
ATCTCCGCCATTAATCAGTATGGTCTGCAGCAGCACCAGCAGCAGCAGCA
AGTTCTGATGGCTTATCCCCTGATGAACGAACAACTCATCGCGCTCAACA
ATCAACCGAATCTGCTGCTCAGCAACGCTGCGCCAATGGGACAGCAGGGA
ATACCGGCAGCGGCTCCGGCTCAACCGCCGCCCGCATATCAGAATCAGCA
TATGCATACGCAATCGCACGCCTATGTTGAGGGTGAGTTTGAGTTCCTCA
AGTTCCTTACCTTCGACGATCTGAACCAGCGGCTGTGCAACATCGATCAC
GAAATGGAGCTGGAGATCGAACAGCTAAACAAGAAATACAATGCCAAGCG
GCAGCCAATTGTTGACGCCATGAATGCAAAGCGCAAACGCCAGCAGAACA
TCAATAATAATCTGATTAAGATAGCAAGCTTTCTAGACCAT
BO07565.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hpo-RB | 2010 | CG11228-PB | 1..2007 | 17..2023 | 10020 | 100 | Plus |
| hpo-RA | 2010 | CG11228-PA | 1..2007 | 17..2023 | 10020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hpo-RB | 2804 | CG11228-RB | 109..2115 | 17..2023 | 10020 | 100 | Plus |
| hpo-RA | 2503 | CG11228-RA | 109..2115 | 17..2023 | 10020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19495460..19496748 | 1305..17 | 6445 | 100 | Minus |
| 2R | 25286936 | 2R | 19494685..19495404 | 2023..1304 | 3585 | 99.9 | Minus |
Blast to na_te.dros performed 2014-11-27 20:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| diver2 | 4917 | diver2 DIVER2 4917bp | 4015..4057 | 1852..1894 | 116 | 74.4 | Plus |
BO07565.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:48 Download gff for
BO07565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 1..2010 | 17..2024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:47 Download gff for
BO07565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 115..2126 | 8..2023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:41 Download gff for
BO07565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 109..2115 | 17..2025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:48 Download gff for
BO07565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 115..2126 | 8..2023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:19 Download gff for
BO07565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 109..2115 | 17..2025 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:19 Download gff for
BO07565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19494683..19495403 | 1305..2025 | 99 | <- | Minus |
| 2R | 19495461..19496748 | 17..1304 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:41 Download gff for
BO07565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15382188..15382908 | 1305..2025 | 99 | <- | Minus |
| arm_2R | 15382966..15384253 | 17..1304 | 100 | | Minus |
BO07565.pep Sequence
Translation from 16 to 2041
> BO07565.pep
MSEPEVTSVVDMKSPNISSSCSFFKLKKLSEESLLQPPEKVFDIMYKLGE
GSYGSVYKAVHKESSSIVAIKLVPVESDLHEIIKEISIMQQCDSPYVVRY
YGSYFKQYDLWICMEYCGAGSVSDIMRLRKKTLTEDEIATILSDTLQGLV
YLHLRRKIHRDIKAANILLNTEGYAKLADFGVAGQLTDTMAKRNTVIGTP
FWMAPEVIEEIGYDCVADIWSLGITALEMAEGKPPYGEIHPMRAIFMIPQ
KPPPSFREPDRWSTEFIDFVSKCLVKEPDDRATATELLEHEFIRNAKHRS
ILKPMLEETCAIREQQRANRSFGGVLAASQAKSLATQENGMQQHITDNAF
MEDPGTLVPEKFGEYQQSSASDATMIAHAEQGVDEGTLGPGGLRNLSKAA
APAAASSAASPLDMPAVDSGTMVELESNLGTMVINSDSDDSTTAKNNDDQ
KPRNRYRPQFLEHFDRKNAGDGRGDEKPIATEYSPAAAEQQQQQQQQQQQ
QQQDEQHLASGANDLNNWEHNMEMQFQQISAINQYGLQQHQQQQQVLMAY
PLMNEQLIALNNQPNLLLSNAAPMGQQGIPAAAPAQPPPAYQNQHMHTQS
HAYVEGEFEFLKFLTFDDLNQRLCNIDHEMELEIEQLNKKYNAKRQPIVD
AMNAKRKRQQNINNNLIKIASFLDH
BO07565.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hpo-PB | 669 | CG11228-PB | 1..669 | 1..669 | 3474 | 100 | Plus |
| hpo-PA | 669 | CG11228-PA | 1..669 | 1..669 | 3474 | 100 | Plus |
| GckIII-PA | 642 | CG5169-PA | 9..549 | 38..543 | 740 | 34.3 | Plus |
| hppy-PE | 934 | CG7097-PE | 1..426 | 17..420 | 644 | 36.3 | Plus |
| hppy-PA | 1218 | CG7097-PA | 1..482 | 17..507 | 642 | 32.6 | Plus |
