Clone BO07566 Report

Search the DGRC for BO07566

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG5687-RA
Protein status:BO07566.pep: validated full length
Sequenced Size:2083

Clone Sequence Records

BO07566.3prime Sequence

908 bp (843 high quality bases) assembled on 2006-01-06

> BO07566.3prime
ATGGTCTAGAAAGCTTGCTTCGTCGTCAATGCGAATGGCATGGTTCACAT
GGCCCTCGTCACTTGTGAGCTCTCGCGGATCGCCAATCACCGTCGTGGTG
GTGTACTGCACCTGGGAGTCGCTCTTGAAGATCTCCTCCGACACGGCGGG
ATTGTCGATGTCCTTGCCGGTGATCTTCAGCACATTGCGTCGCTGGATAA
AGTCAATGATCAGCGAAATGAACCAGCCCAGGAAAACGGTGAGTAGGCAG
CCGATCATGCTGTACCACATGTAGCTCAGCCGGAAAATGGGCCAAGATGT
GAATCCCCCCTCCTCAATGACTTCCAAAGGTTCTGTTAGCAAGCTGCCAA
TGATGTTCGTCATGTTCACATGGCAGTCGCATTTGTCGATGGATGTGGGC
AATGCGGGCTGCTCCACGCTCACAATTTGGGCAACCACGCCCACAAATAT
GACCAGGGCCAGGGACAAGAGTCCTCCGTAGAAGGCGCCCTTGGTATTGG
CCTGTTTGCAGGCGATTCCCAGCACGAAGAGACCGAGGGTGACACCACCA
ATCAGTCCATTGAGGGTAAGCGTGGCCTGCAGAACTCCTCCCAGGTGCTC
CACGATGAAGACCAAGCCGAAGGAGGCAATGCCAAAGCCCAGGGACATCC
ACTTGGCATAGGTGGCTCCCTTCTCCGGAGAGATTTTGATGTTCATGCCA
TTGACCAGCAGATCTTCGCAGGTCACAGCGGACAGGGAGTTCAAGGCAGA
GGCCACGGTGCCCAAACTGGCAGCAAAGATGCCAGCCACAAAGATTCCCG
CCACGGAGCTAATATGCTCGTANGTATTAATCACGTAGTAGGGCAACAAC
TGATCCGTGGCTGAAATGCGTCCAGCAGTCAAGGGATCGCAGTCCGCATA
GTGGGTGA

BO07566.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5687-PA 2052 CG5687-RA 1160..2049 908..19 4431 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5687-RB 3115 CG5687-RB 1924..2813 908..19 4439 99.9 Minus
CG5687-RA 2752 CG5687-RA 1561..2450 908..19 4439 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1934272..1934734 299..761 2315 100 Plus
3L 28110227 3L 1933935..1934214 19..298 1400 100 Plus
3L 28110227 3L 1934800..1934947 761..908 729 99.3 Plus
Blast to na_te.dros performed on 2015-02-11 03:46:45 has no hits.

BO07566.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:35 Download gff for BO07566.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5687-PA 1161..2052 18..907 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:23 Download gff for BO07566.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5687-PA 1161..2052 18..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:56:20 Download gff for BO07566.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 1562..2450 19..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:00:25 Download gff for BO07566.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 1562..2450 19..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:00:25 Download gff for BO07566.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1933935..1934214 19..298 100 <- Plus
3L 1934272..1934733 299..760 100 <- Plus
3L 1934800..1934946 761..907 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:56:20 Download gff for BO07566.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1934800..1934946 761..907 99   Plus
arm_3L 1933935..1934214 19..298 100 <- Plus
arm_3L 1934272..1934733 299..760 100 <- Plus

BO07566.5prime Sequence

946 bp (736 high quality bases) assembled on 2006-01-06

> BO07566.5prime
GAAGTTATCAGTCGACATGTTCGCCACCCAGGACACCATTCTGAAGTTGC
TGACCCTGTGCGCCCTGGCACATTCTATAACCGCATTGGCCCTGCAGGAA
CGGTCTCCGACTCCAGGAGGATCTGCTCCCTTGGATTCCAGCCACAAGTA
CTTGATAGTGCGCGGTGAGTCGCCCAGTGAATCCCAGGAGCATGTGGAGT
TCGATAATGCCGCCACCCTGCTCCTGAGAGCCTTCAAGAATCAACAGATT
CCCGCATCCGCGGAGCTGGAGGAATGCAGTGCGCCCAGTCACAAGGCCAC
CTTCTCGGGCTACGACTACGTGATTCTGCTGGGCATGCTGGTCATCTCGC
TGGGCATCGGCATCTTCTATGGCTTCTTCCAGAAGGGCGGCAGCTCGTCC
AACGAGTTCCTGCTGGGCTCCGAGATGAGCATCTTCCCGGTGACACTCAG
TCTCACGACCAGCTTCATCACGGCCATCGAACTGCTGGGAAATCCATCCG
AGATGTACTTCCAGGGCACCCAGTTTGTGCTCATCGTAATACCCATGGTG
ATTGTCATTCCGGTTGCTGTGAAGATCTTCTATCCCATTTACTTTAAAAT
GGAGCTCACCAGCTGCTATGAGTATCTGGGCATTCGGTTTGGCAAGGAGA
TCAGGATTCTGGGTGCAGTGCTCTATGTCATTCAGATGTGCTTCTACACG
GCTGTGGCAGTCCTGGCACCGGCAATTGCTCTGTCTAAGGCCACGGGACT
GGACACCAAAATCGCCGTGGTCCTGATCTATGTGGTCTGCGTTTTCTACT
CCTCACAGGGAGGCATGAGGGCTGTAGTCATTGCCGACTCCCTTCAGGCT
GCTGTCCTGGCTGTATCCTTGGTACTGATCGTGGGCTTGGGCTGCTTCTA
CAGTGGCAATCCCATCCAGGTCTTTCAGACTGCTTCCGATCACAAT

BO07566.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5687-PA 2052 CG5687-RA 1..930 17..946 4575 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5687-RB 3115 CG5687-RB 765..1694 17..946 4605 99.7 Plus
CG5687-RA 2752 CG5687-RA 402..1331 17..946 4605 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1935612..1936280 685..17 3345 100 Minus
3L 28110227 3L 1935387..1935554 848..681 795 98.2 Minus
3L 28110227 3L 1935231..1935338 946..839 510 98.1 Minus
Blast to na_te.dros performed on 2015-02-11 21:59:16 has no hits.

BO07566.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:36 Download gff for BO07566.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5687-PA 1..930 17..946 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:24 Download gff for BO07566.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5687-PA 1..930 17..946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:56 Download gff for BO07566.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 398..1331 9..946 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:19 Download gff for BO07566.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 398..1331 9..946 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:19 Download gff for BO07566.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1935231..1935329 848..946 100 <- Minus
3L 1935388..1935549 686..847 98 <- Minus
3L 1935612..1936284 9..685 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:56 Download gff for BO07566.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1935231..1935329 848..946 100 <- Minus
arm_3L 1935388..1935549 686..847 98 <- Minus
arm_3L 1935612..1936284 9..685 99   Minus

BO07566.complete Sequence

2083 bp (2083 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630842

> BO07566.complete
GAAGTTATCAGTCGACATGTTCGCCACCCAGGACACCATTCTGAAGTTGC
TGACCCTGTGCGCCCTGGCACATTCTATAACCGCATTGGCCCTGCAGGAA
CGGTCTCCGACTCCAGGAGGATCTGCTCCCTTGGATTCCAGCCACAAGTA
CTTGATAGTGCGCGGTGAGTCGCCCAGTGAATCCCAGGAGCATGTGGAGT
TCGATAATGCCGCCACCCTGCTCCTGAGAGCCTTCAAGAATCAACAGATT
CCCGCATCCGCGGAGCTGGAGGAATGCAGTGCGCCCAGTCACAAGGCCAC
CTTCTCGGGCTACGACTACGTGATTCTGCTGGGCATGCTGGTCATCTCGC
TGGGCATCGGCATCTTCTATGGCTTCTTCCAGAAGGGCGGCAGCTCGTCC
AACGAGTTCCTGCTGGGCTCCGAGATGAGCATCTTCCCGGTGACACTCAG
TCTCACGACCAGCTTCATCACGGCCATCGAACTGCTGGGAAATCCATCCG
AGATGTACTTCCAGGGCACCCAGTTTGTGCTCATCGTAATACCCATGGTG
ATTGTCATTCCGGTTGCTGTGAAGATCTTCTATCCCATTTACTTTAAAAT
GGAGCTCACCAGCTGCTATGAGTATCTGGGCATTCGGTTTGGCAAGGAGA
TCAGGATTCTGGGTGCAGTGCTCTATGTCATTCAGATGTGCTTCTACACG
GCTGTGGCAGTCCTGGCACCGGCAATTGCTCTGTCTAAGGCCACGGGACT
GGACACCAAAATCGCCGTGGTCCTGATCTATGTGGTCTGCGTTTTCTACT
CCTCACAGGGAGGCATGAAGGCTGTAGTCATTGCCGACTCCTTCCAGGCT
GCTGTCCTGGCTGTATCCTTGGTACTGATCGTGGGCTTGGGCTGCTTCTA
CAGTGGCAATCCCATCCAGGTCTTTCAGACTGCTTCCGATCACAATCGCT
TGGAGTTCTTCAACATGGATCCCGATCCCACAACACGTCACACCGTCTGG
TCGGTGGTCATTGGTGGCTTTTTCTACTGGACCTCGCTGTTCTGCACCAA
CCAGGCGTCCGTTCAGAAATGCATGTCCTTGAAGTCCTTGAGGCTAGCCA
AGATTGCTCTGGGCTTTGCCATTATCGGCTTAATTGTGGTCTTCCTGCTG
AACTTCTACACGGGTCTGATGGTCTTCACCCACTATGCGGACTGCGATCC
CTTGACTGCTGGACGCATTTCAGCCACGGATCAGTTGTTGCCCTACTACG
TGATTAATACCTACGAGCATATTAGCTCCGTGGCGGGAATCTTTGTGGCT
GGCATCTTTGCTGCCAGTTTGGGCACCGTGGCCTCTGCCTTGAACTCCCT
GTCCGCTGTGACCTGCGAAGATCTGCTGGTCAATGGCATGAACATCAAAA
TCTCTCCGGAGAAGGGAGCCACCTATGCCAAGTGGATGTCCCTGGGCTTT
GGCATTGCCTCCTTCGGCTTGGTCTTCATCGTGGAGCACCTGGGAGGAGT
TCTGCAGGCCACGCTTACCCTCAATGGACTGATTGGTGGTGTCACCCTCG
GTCTCTTCGTGCTGGGAATCGCCTGCAAACAGGCCAATACCAAGGGCGCC
TTCTACGGAGGACTCTTGTCCCTGGCCCTGGTCATATTTGTGGGCGTGGT
TGCCCAAATTGTGAGCGTGGAGCAGCCCGCATTGCCCACATCCATCGACA
AATGCGACTGCCATGTGAACATGACGAACATCATTGGCAGCTTGCTAACA
GAACCTTTGGAAGTCATTGAGGAGGGGGGATTCACATCTTGGCCCATTTT
CCGGCTGAGCTACATGTGGTACAGCATGATCGGCTGCCTACTCACCGTTT
TCCTGGGCTGGTTCATTTCGCTGATCATTGACTTTATCCAGCGACGCAAT
GTGCTGAAGATCACCGGCAAGGACATCGACAATCCCGCCGTGTCGGAGGA
GATCTTCAAGAGCGACTCCCAGGTGCAGTACACCACCACGACGGTGATTG
GCGATCCGCGAGAGCTCACAAGTGACGAGGGCCATGTGAACCATGCCATT
CGCATTGACGACGAAGCAAGCTTTCTAGACCAT

BO07566.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5687-RB 2052 CG5687-PB 1..2049 17..2065 10245 100 Plus
CG5687-RA 2052 CG5687-PA 1..2049 17..2065 10245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5687-RB 3115 CG5687-RB 765..2813 17..2065 10245 100 Plus
CG5687-RA 2752 CG5687-RA 402..2450 17..2065 10245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1935612..1936280 685..17 3345 100 Minus
3L 28110227 3L 1934272..1934734 1785..1323 2315 100 Minus
3L 28110227 3L 1934800..1935167 1323..956 1810 99.5 Minus
3L 28110227 3L 1933935..1934214 2065..1786 1400 100 Minus
3L 28110227 3L 1935387..1935554 848..681 840 100 Minus
3L 28110227 3L 1935214..1935338 963..839 595 98.4 Minus
Blast to na_te.dros performed on 2014-11-26 15:39:50 has no hits.

BO07566.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:49 Download gff for BO07566.complete
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 1..2052 17..2066 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:49 Download gff for BO07566.complete
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 398..2450 9..2065 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:21 Download gff for BO07566.complete
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 407..2450 22..2067 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:49 Download gff for BO07566.complete
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 398..2450 9..2065 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:57 Download gff for BO07566.complete
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 407..2450 22..2067 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:57 Download gff for BO07566.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1933933..1934214 1786..2067 99 <- Minus
3L 1935388..1935549 686..847 100 <- Minus
3L 1934272..1934733 1324..1785 100 <- Minus
3L 1934800..1935159 964..1323 100 <- Minus
3L 1935214..1935329 848..963 100 <- Minus
3L 1935612..1936275 22..685 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:21 Download gff for BO07566.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1935214..1935329 848..963 100 <- Minus
arm_3L 1935388..1935549 686..847 100 <- Minus
arm_3L 1933933..1934214 1786..2067 99 <- Minus
arm_3L 1934272..1934733 1324..1785 100 <- Minus
arm_3L 1934800..1935159 964..1323 100 <- Minus
arm_3L 1935612..1936275 22..685 100   Minus

BO07566.pep Sequence

Translation from 16 to 2083

> BO07566.pep
MFATQDTILKLLTLCALAHSITALALQERSPTPGGSAPLDSSHKYLIVRG
ESPSESQEHVEFDNAATLLLRAFKNQQIPASAELEECSAPSHKATFSGYD
YVILLGMLVISLGIGIFYGFFQKGGSSSNEFLLGSEMSIFPVTLSLTTSF
ITAIELLGNPSEMYFQGTQFVLIVIPMVIVIPVAVKIFYPIYFKMELTSC
YEYLGIRFGKEIRILGAVLYVIQMCFYTAVAVLAPAIALSKATGLDTKIA
VVLIYVVCVFYSSQGGMKAVVIADSFQAAVLAVSLVLIVGLGCFYSGNPI
QVFQTASDHNRLEFFNMDPDPTTRHTVWSVVIGGFFYWTSLFCTNQASVQ
KCMSLKSLRLAKIALGFAIIGLIVVFLLNFYTGLMVFTHYADCDPLTAGR
ISATDQLLPYYVINTYEHISSVAGIFVAGIFAASLGTVASALNSLSAVTC
EDLLVNGMNIKISPEKGATYAKWMSLGFGIASFGLVFIVEHLGGVLQATL
TLNGLIGGVTLGLFVLGIACKQANTKGAFYGGLLSLALVIFVGVVAQIVS
VEQPALPTSIDKCDCHVNMTNIIGSLLTEPLEVIEEGGFTSWPIFRLSYM
WYSMIGCLLTVFLGWFISLIIDFIQRRNVLKITGKDIDNPAVSEEIFKSD
SQVQYTTTTVIGDPRELTSDEGHVNHAIRIDDEASFLDH

BO07566.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5687-PB 683 CG5687-PB 1..683 1..683 3472 100 Plus
CG5687-PA 683 CG5687-PA 1..683 1..683 3472 100 Plus
CG32669-PA 604 CG32669-PA 2..553 94..647 925 35.1 Plus
CG33124-PD 588 CG33124-PD 6..544 96..620 901 35.5 Plus
CG10444-PA 587 CG10444-PA 5..532 95..621 884 35.7 Plus