Clone Sequence Records
BO07569.3prime Sequence
868 bp (792 high quality bases) assembled on 2006-01-06
> BO07569.3prime
ATGGTCTAGAAAGCTTGCACGATTAGAACCACAAAGACTTATTACACGAT
CGTAGACCAAGGATCGAACGTCCTTTGAGATCGTGAAGTCGAAGTGCGAG
AATCCTTCGAAGCGAATGTTCCTGTTTTCTATGCAGTTGGGCAGGTCCCG
CTCCAGTCGAAGGACATCCGATTCGGATCCCAACCAGTCGCCATCTCCGC
GGTGAAGAGCCACCTTGCCCAGTGCCAGGGAAAGGTTGTAAAGTGGGGGA
AAGATCGACTGGTAGCGTATCTTATTCAGAATTAGCCCGTAGTCGTACTT
TTGGAAAGCAGAATTGCCCTGCAATTGGGCGAAGTGATAGATCTGCTTGG
CGGAGCTTCCCTGCGAGGCGTGACCTTCCAAAATGGGGGATAGTGTCATA
TTGAAGCTGTTGAAGTTAAATCCGCACACCACAAATTCAAAGATGGCACA
GATGCGACTGGGGATAAGTTTGGTGCAGATGTGGTTACGGAACATGTCAA
CAATCTTGTTTTTCAGGGAGATCTTGTGGCCGCCCAAGAGATTCAACAAC
ATTGTGAAGCCACCCGAAAATAATTTCATAAACTTAAGTGCTGGACTGCG
TGTTCCTTCCATATAAACTGATGGCGAGAGGGACTGCATCAATGAGATCT
TGCCTGCATACTCAGGCCTTTCACTACACATCACAAAGAAGGCCGTGGAT
CCCTGCGAGTGACCAATGTACTGGATGCTCGGCATTTTAGTCTGCAGCAG
GATCAAGTCGATGGCAGCGGGTAGATCGTACTGCCCGATCTCGTGGAAGG
AGAAGTCCCAGAAGATCTTGTCGCTCTCCCGACCGGCCAGGCGCTCCTCC
CGAGTAACGTTTACCCTT
BO07569.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18284-PA | 1374 | CG18284-RA | 540..1371 | 850..19 | 4160 | 100 | Minus |
CG31872-PA | 3222 | CG31872-RA | 2676..3200 | 565..41 | 2225 | 96.9 | Minus |
CG31872-PA | 3222 | CG31872-RA | 2392..2667 | 849..574 | 1330 | 99.2 | Minus |
CG17097-PC | 1239 | CG17097-RC | 435..461 | 811..785 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18284-RB | 1460 | CG18284-RB | 546..1395 | 868..19 | 4175 | 99.5 | Minus |
CG18284-RC | 1539 | CG18284-RC | 546..1395 | 868..19 | 4175 | 99.5 | Minus |
CG31872-RB | 3401 | CG31872-RB | 2407..3215 | 849..41 | 3700 | 97.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10645369..10645747 | 397..19 | 1895 | 100 | Minus |
2L | 23513712 | 2L | 10642997..10643353 | 397..41 | 1710 | 98.6 | Minus |
2L | 23513712 | 2L | 10644800..10645097 | 850..553 | 1490 | 100 | Minus |
2L | 23513712 | 2L | 10642420..10642716 | 849..553 | 1380 | 97.6 | Minus |
2L | 23513712 | 2L | 10645160..10645315 | 552..397 | 780 | 100 | Minus |
2L | 23513712 | 2L | 10642793..10642939 | 543..397 | 615 | 94.6 | Minus |
2L | 23513712 | 2L | 10649023..10649179 | 811..655 | 230 | 76.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:51:15 has no hits.
BO07569.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:41 Download gff for
BO07569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18284-PA | 522..1374 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:31 Download gff for
BO07569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18284-PA | 522..1374 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:01 Download gff for
BO07569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18284-RC | 546..1404 | 11..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:17:54 Download gff for
BO07569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18284-RC | 546..1404 | 11..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:17:54 Download gff for
BO07569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10644782..10645097 | 553..868 | 98 | -> | Minus |
2L | 10645160..10645315 | 397..552 | 100 | -> | Minus |
2L | 10645370..10645756 | 11..396 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:01 Download gff for
BO07569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10644782..10645097 | 553..868 | 98 | -> | Minus |
arm_2L | 10645160..10645315 | 397..552 | 100 | -> | Minus |
arm_2L | 10645370..10645756 | 11..396 | 99 | | Minus |
BO07569.5prime Sequence
875 bp (859 high quality bases) assembled on 2006-01-06
> BO07569.5prime
GAAGTTATCAGTCGACATGGCGATCGCATTTAATATTGCGATCTATGCAA
TAATTTTAGTGGGTAGTTTGGTACCCAGCAAGACTCAGGAATGGGTTCCA
TATGCATATCCTGTAGATGAAAATCAAGGATTGAATGAACAGACACAGTG
GCAGTCACAATCACAGATTCAGAGTCAAGGGACGTCACAATCACAAAGTC
AAGCTCAAATTCAATCACAGCCTGAACCAAGGTCATGTTTACAATGTCAA
CAAGCTAGTTACCAACAATTCTTTGCGGAGGTGGACATCCAGATCGACGC
CAAGCTGGAGACGCCCAAAATGATCTCAAAATATGGACATCAAGTAGAGA
CCCATTACGCATTCACTGCCGACGGCTACAAGCTCTGCCTGCATCGGATT
CCGCGGTCTGGAGCTACACCCGTCCTATTGGTCCATGGCCTGATGGCCAG
CTCGGCCACTTGGGTGCAGTTCGGTCCATCCCAGGGTCTGGCCTACATCC
TGTCCCAAAGCGGCTACGACGTCTGGATGTTGAACACAAGGGGTAACGTT
TACTCGGAGGAGCGCCTGGCCGGTCGGGAGAGCGACAAGATCTTCTGGGA
CTTCTCCTTCCACGAGATCGGGCAGTACGATCTACCCGCTGCCATCGACT
TGATCCTGCTGCAGACTAAAATGCCGAGCATCCAGTACATTGGTCACTCG
CAGGGATCCACGGCCTTCTTTGTGATGTGTAGTGAAAGGCCTGAGTATGC
AGGCAAGATCTCATTGATGCAGTCCCTCTCGCCATCAGTTTATATGGAAG
GAACACGCAGTCCAGCACTTAAGTTTATGAAATTATTTTCGGGTGGCTTC
ACAATGTTGTTGAAATCTCTTGGGC
BO07569.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18284-PA | 1374 | CG18284-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
CG31872-PA | 3222 | CG31872-RA | 2087..2667 | 252..832 | 2430 | 96.7 | Plus |
CG17097-PC | 1239 | CG17097-RC | 435..461 | 595..621 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18284-RB | 1460 | CG18284-RB | 21..882 | 13..875 | 4275 | 99.8 | Plus |
CG18284-RC | 1539 | CG18284-RC | 21..882 | 13..875 | 4275 | 99.8 | Plus |
CG31872-RB | 3401 | CG31872-RB | 2067..2724 | 217..875 | 2730 | 94.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:26:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10644557..10645097 | 313..853 | 2705 | 100 | Plus |
2L | 23513712 | 2L | 10642176..10642716 | 313..853 | 2465 | 97 | Plus |
2L | 23513712 | 2L | 10643991..10644150 | 13..172 | 785 | 99.4 | Plus |
2L | 23513712 | 2L | 10644340..10644485 | 168..313 | 730 | 100 | Plus |
2L | 23513712 | 2L | 10641997..10642093 | 217..313 | 245 | 83.5 | Plus |
2L | 23513712 | 2L | 10649023..10649179 | 595..751 | 230 | 76.4 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:26:43 has no hits.
BO07569.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:42 Download gff for
BO07569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18284-PA | 1..858 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:32 Download gff for
BO07569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18284-PA | 1..858 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:25:37 Download gff for
BO07569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18284-RC | 21..882 | 13..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:49:47 Download gff for
BO07569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18284-RC | 21..882 | 13..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:49:47 Download gff for
BO07569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10643991..10644150 | 13..172 | 99 | -> | Plus |
2L | 10644345..10644485 | 173..313 | 100 | -> | Plus |
2L | 10644558..10645097 | 314..853 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:25:37 Download gff for
BO07569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10643991..10644150 | 13..172 | 99 | -> | Plus |
arm_2L | 10644345..10644485 | 173..313 | 100 | -> | Plus |
arm_2L | 10644558..10645097 | 314..853 | 100 | -> | Plus |
BO07569.complete Sequence
1405 bp (1405 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630844
> BO07569.complete
GAAGTTATCAGTCGACATGGCGATCGCATTTAATATTGCGATCTATGCAA
TAATTTTAGTGGGTAGTTTGGTACCCAGCAAGACTCAGGAATGGGTTCCA
TATGCATATCCTGTAGATGAAAATCAAGGATTGAATGAACAGACACAGTG
GCAGTCACAATCACAGATTCAGAGTCAAGGGACGTCACAATCACAAAGTC
AAGCTCAAATTCAATCACAGCCTGAACCAAGGTCATGTTTACAATGTCAA
CAAGCTAGTTACCAACAATTCTTTGCGGAGGTGGACATCCAGATCGACGC
CAAGCTGGAGACGCCCAAAATGATCTCAAAATATGGACATCAAGTAGAGA
CCCATTACGCATTCACTGCCGACGGCTACAAGCTCTGCCTGCATCGGATT
CCGCGGTCTGGAGCTACACCCGTCCTATTGGTCCATGGCCTGATGGCCAG
CTCGGCCACTTGGGTGCAGTTCGGTCCATCCCAGGGTCTGGCCTACATCC
TGTCCCAAAGCGGCTACGACGTCTGGATGTTGAACACAAGGGGTAACGTT
TACTCGGAGGAGCGCCTGGCCGGTCGGGAGAGCGACAAGATCTTCTGGGA
CTTCTCCTTCCACGAGATCGGGCAGTACGATCTACCCGCTGCCATCGACT
TGATCCTGCTGCAGACTAAAATGCCGAGCATCCAGTACATTGGTCACTCG
CAGGGATCCACGGCCTTCTTTGTGATGTGTAGTGAAAGGCCTGAGTATGC
AGGCAAGATCTCATTGATGCAGTCCCTCTCGCCATCAGTTTATATGGAAG
GAACACGCAGTCCAGCACTTAAGTTTATGAAATTATTTTCGGGTGGCTTC
ACAATGTTGTTGAATCTCTTGGGCGGCCACAAGATCTCCCTGAAAAACAA
GATTGTTGACATGTTCCGTAACCACATCTGCACCAAACTTATCCCCAGTC
GCATCTGTGCCATCTTTGAATTTGTGGTGTGCGGATTTAACTTCAACAGC
TTCAATATGACACTATCCCCCATTTTGGAAGGTCACGCCTCGCAGGGAAG
CTCCGCCAAGCAGATCTATCACTTCGCCCAATTGCAGGGCAATTCTGCTT
TCCAAAAGTACGACTACGGGCTAATTCTGAATAAGATACGCTACCAGTCG
ATCTTTCCCCCACTTTACAACCTTTCCCTGGCACTGGGCAAGGTGGCTCT
TCACCGCGGAGATGGCGACTGGTTGGGATCCGAATCGGATGTCCTTCGAC
TGGAGCGGGACCTGCCCAACTGCATAGAAAACAGGAACATTCGCTTCGAA
GGATTCTCGCACTTCGACTTCACGATCTCAAAGGACGTTCGATCCTTGGT
CTACGATCGTGTAATAAGTCTTTGTGGTTCTAATCGTGCAAGCTTTCTAG
ACCAT
BO07569.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:28:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18284-RB | 1374 | CG18284-PB | 1..1371 | 17..1387 | 6855 | 100 | Plus |
CG18284-RC | 1374 | CG18284-PC | 1..1371 | 17..1387 | 6855 | 100 | Plus |
CG31872-RB | 3222 | CG31872-PB | 2052..3200 | 217..1365 | 5025 | 95.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:28:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18284-RB | 1460 | CG18284-RB | 21..1395 | 13..1387 | 6860 | 99.9 | Plus |
CG18284-RC | 1539 | CG18284-RC | 21..1395 | 13..1387 | 6860 | 99.9 | Plus |
CG31872-RB | 3401 | CG31872-RB | 2067..3215 | 217..1365 | 5025 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:28:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10644557..10645097 | 313..853 | 2705 | 100 | Plus |
2L | 23513712 | 2L | 10642176..10642716 | 313..853 | 2465 | 97 | Plus |
2L | 23513712 | 2L | 10645369..10645747 | 1009..1387 | 1895 | 100 | Plus |
2L | 23513712 | 2L | 10642997..10643353 | 1009..1365 | 1710 | 98.6 | Plus |
2L | 23513712 | 2L | 10643991..10644150 | 13..172 | 785 | 99.4 | Plus |
2L | 23513712 | 2L | 10645160..10645315 | 854..1009 | 780 | 100 | Plus |
2L | 23513712 | 2L | 10644340..10644485 | 168..313 | 730 | 100 | Plus |
2L | 23513712 | 2L | 10642793..10642939 | 863..1009 | 615 | 94.6 | Plus |
2L | 23513712 | 2L | 10641997..10642093 | 217..313 | 245 | 83.5 | Plus |
2L | 23513712 | 2L | 10649023..10649179 | 595..751 | 230 | 76.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:28:27 has no hits.
BO07569.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:44 Download gff for
BO07569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18284-RA | 1..1374 | 17..1391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:34 Download gff for
BO07569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18284-RA | 9..1392 | 13..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:32 Download gff for
BO07569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18284-RC | 25..1395 | 17..1389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:44 Download gff for
BO07569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18284-RA | 9..1392 | 13..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:20 Download gff for
BO07569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18284-RC | 25..1395 | 17..1389 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:20 Download gff for
BO07569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10643995..10644150 | 17..172 | 100 | -> | Plus |
2L | 10644345..10644485 | 173..313 | 100 | -> | Plus |
2L | 10644558..10645097 | 314..853 | 100 | -> | Plus |
2L | 10645160..10645315 | 854..1009 | 100 | -> | Plus |
2L | 10645370..10645747 | 1010..1389 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:32 Download gff for
BO07569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10643995..10644150 | 17..172 | 100 | -> | Plus |
arm_2L | 10644345..10644485 | 173..313 | 100 | -> | Plus |
arm_2L | 10644558..10645097 | 314..853 | 100 | -> | Plus |
arm_2L | 10645160..10645315 | 854..1009 | 100 | -> | Plus |
arm_2L | 10645370..10645747 | 1010..1389 | 99 | | Plus |
BO07569.pep Sequence
Translation from 16 to 1405
> BO07569.pep
MAIAFNIAIYAIILVGSLVPSKTQEWVPYAYPVDENQGLNEQTQWQSQSQ
IQSQGTSQSQSQAQIQSQPEPRSCLQCQQASYQQFFAEVDIQIDAKLETP
KMISKYGHQVETHYAFTADGYKLCLHRIPRSGATPVLLVHGLMASSATWV
QFGPSQGLAYILSQSGYDVWMLNTRGNVYSEERLAGRESDKIFWDFSFHE
IGQYDLPAAIDLILLQTKMPSIQYIGHSQGSTAFFVMCSERPEYAGKISL
MQSLSPSVYMEGTRSPALKFMKLFSGGFTMLLNLLGGHKISLKNKIVDMF
RNHICTKLIPSRICAIFEFVVCGFNFNSFNMTLSPILEGHASQGSSAKQI
YHFAQLQGNSAFQKYDYGLILNKIRYQSIFPPLYNLSLALGKVALHRGDG
DWLGSESDVLRLERDLPNCIENRNIRFEGFSHFDFTISKDVRSLVYDRVI
SLCGSNRASFLDH
BO07569.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18284-PB | 457 | CG18284-PB | 1..457 | 1..457 | 2390 | 100 | Plus |
CG18284-PC | 457 | CG18284-PC | 1..457 | 1..457 | 2390 | 100 | Plus |
CG31872-PB | 1073 | CG31872-PB | 637..1073 | 39..456 | 2006 | 88.8 | Plus |
CG31872-PA | 1073 | CG31872-PA | 637..1073 | 39..456 | 2006 | 88.8 | Plus |
CG17097-PB | 1087 | CG17097-PB | 624..1078 | 39..450 | 1283 | 56.5 | Plus |