Clone BO07571 Report

Search the DGRC for BO07571

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCyp6a17-RA
Protein status:BO07571.pep: validated full length
Sequenced Size:1537

Clone Sequence Records

BO07571.3prime Sequence

924 bp (843 high quality bases) assembled on 2006-01-06

> BO07571.3prime
ATGGTCTAGAAAGCTTGCTTTGGCGAGCTTCTCCACTTTAAGGTGGATAC
CATTCTCGGCCGATATCAGAATGTTCTTAACGACAATCTTCATGGGTATT
TGAGTTTCCGGGGAAACACTGAATTTATAGCCCCTGATCAAGTAGGCCAA
GCCCACACAGGTTTGCATCATTCCAAACCGCAGACCAATGCAGTTCCGCG
GACCTTCTCCAAATGGAAGCCAAGTGCACGAGGGTCTCGCCGCGATTTCC
TCGTCGGTAAAGCGTTCTGGCTTGAATATCTCCGGTTCCGGATATATGTC
CGGATCATAGTGAATGCCCAAAGCTGGGATCACAACAATGGTTCCCTTGG
CAATGAAGTATTTTGGATCTTCAGGCGAAAAGTCGGTGTCAGTCATTCTT
GTAAGATGAGCCAGTACTGGGTACTTTCGCAGCGTTTCCATCACAACCTG
CTCCAGGTATTTCATCTCCTTGATTCCCTCGTAGGTGAACTCTTTGTTAT
GCTTGCCGAACACATTGCCAATCTCCTCCCTGAGTTTATCCTGAACATCC
TGGTTCCTGGCCAGCTCATATAGAGCGAATCCCATGGTCGTGGAGCTTGT
CTCAAACCCAGCCACAAAAAATATGAAAGCCTGAGCGAGAAGTTCGTTAA
AGGTCAGGCCATCCTCCGAATTTCCCGACTGCTCATTCTTATACATCTCT
ATCAGACTGTCCATGAAATCATTTCGCTTTTCCTTCGTCCGTAGACGGTA
GTCAATGGTTTCCCTCACGATCTTGGTGTAAAAGTCCTCTGCCTCCTGGA
TATTTAGTTTCAGACGTAAGCGGCGCGATAACTTGGGAAATCAAAGAGGA
ATATTCCAGCATATTCCCGTAGCGATGCTCGGTGATCGCCCGCTTGCCAT
TGACACAATTCAGCCTTTGGATCG

BO07571.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10241-PA 1506 Cyp6a17-RA 680..1503 842..19 4120 100 Minus
CG10242-PA 1509 Cyp6a23-RA 1144..1246 381..279 290 91.2 Minus
CG10241-PA 1506 Cyp6a17-RA 621..665 899..855 225 100 Minus
CG10242-PA 1509 Cyp6a23-RA 1279..1382 246..143 220 88.4 Minus
CG10242-PA 1509 Cyp6a23-RA 1027..1091 498..434 150 89.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a17-RB 1727 CG10241-RB 621..1530 924..19 4450 99.6 Minus
Cyp6a17-RA 1546 CG10241-RA 621..1530 924..19 4450 99.6 Minus
Cyp6a23-RA 1761 CG10242-RA 715..1538 842..19 1705 80.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14874573..14875063 924..438 2255 99.2 Minus
2R 25286936 2R 14875123..14875542 438..19 2100 100 Minus
2R 25286936 2R 14877012..14877431 438..19 1065 83.6 Minus
2R 25286936 2R 14876543..14876947 842..438 645 77.3 Minus
2R 25286936 2R 14882993..14883122 662..533 290 81.5 Minus
2R 25286936 2R 14878691..14878785 633..539 220 82.1 Minus
Blast to na_te.dros performed on 2015-02-11 17:26:38 has no hits.

BO07571.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:45 Download gff for BO07571.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10241-PA 594..1506 15..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:37 Download gff for BO07571.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10241-PA 594..1506 15..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:43:45 Download gff for BO07571.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 621..1542 4..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:08 Download gff for BO07571.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 621..1542 4..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:08 Download gff for BO07571.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14874573..14875063 438..924 99 -> Minus
2R 14875124..14875554 4..437 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:43:45 Download gff for BO07571.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10762078..10762568 438..924 99 -> Minus
arm_2R 10762629..10763059 4..437 98   Minus

BO07571.5prime Sequence

955 bp (801 high quality bases) assembled on 2006-01-06

> BO07571.5prime
GAAGTTATCAGTCGACATGTTGTTACTGGCGCTAATCGTTGTGATACTAT
CACTGCTCGTCTTCGCGGCCCGACGACGTCATGGATACTGGCAGAGAAGG
GGCATACCGCACGACGAGGTACACCCGCTTTTCGGAAACATCAAGGACTG
GCCAAATAAGCGGCACATTGCCGAGATCTTTCGGGACTATTACTTCAAGT
ACAAGAACTCCGATTACCCATTCGCTGGATTTTTCTTCTTTTTCACCCGC
ACTGCTGTGGTCACCGACATGGAATTGCTCAAGAGGGTGCTGATCAAGGA
CTTCAATCACTTTGAGAATCGGGGAGTCTTCTACAACGAGATCGATGATC
CGCTGTCGGCCACCTTGTTCAGCATCGAGGGTCAGAAGTGGCGTCATCTG
CGGCACAAACTGACACCCACTTTTACGTCCGGCAAAATGAAGAACATGTT
TCCGATTGTTGTGAAAGTTGGAGAAGAAATGGATAAGGTCTTCAGAAGTA
AAACCGCTGCGGATCGGGGTCAAGTTTTGGAGGTTGTGGATCTGGTGGCA
CGGTACACCGCCGATGTGATCGGCAACTGCGCATTCGGTCTCAATTGCAA
CAGCTTGTACGATCCAAAGGCTGAATTTGTGTCAATTGGCAAGCGGGCGA
TCACCGAGCATCGCTACGGGAATATGCTGGATATATTCCTCTTTGGATTT
CCCAAGTTATCGCGCCGCTTACGTCTGAAACTAAATATCCAGGAGGCAGA
GGACTTTTACACCAAGATCGTGAGGGAAACCATTGACTACCGTCTACGGA
CGAAGGAAAAGCGAAATGATTTCATGGACAGTCTGATAGAGATGTATAAG
AATGAGCAGTCGGGAAATTCGGAGGATGGCCTGACCTTTTACGAACTTCT
CGCTCAGGCTTTCATATTTTTTGTGGCTGGGTTTGAGACAAGCTCCACGA
CCATG

BO07571.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10241-PA 1506 Cyp6a17-RA 1..939 17..955 4670 99.8 Plus
CG10242-PA 1509 Cyp6a23-RA 222..470 235..483 870 93.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a17-RB 1727 CG10241-RB 28..966 17..955 4680 99.9 Plus
Cyp6a17-RA 1546 CG10241-RA 28..966 17..955 4680 99.9 Plus
Cyp6a23-RA 1761 CG10242-RA 69..974 50..955 1745 79.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14873980..14874918 17..955 4680 99.9 Plus
2R 25286936 2R 14875897..14876802 50..955 1725 79.4 Plus
2R 25286936 2R 14878162..14878240 373..451 185 82.3 Plus
Blast to na_te.dros performed on 2015-02-12 23:37:57 has no hits.

BO07571.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:46 Download gff for BO07571.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10241-PA 1..939 17..955 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:38 Download gff for BO07571.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10241-PA 1..939 17..955 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:27:04 Download gff for BO07571.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 23..966 11..955 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:52 Download gff for BO07571.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 23..966 11..955 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:52 Download gff for BO07571.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14873975..14874918 11..955 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:27:04 Download gff for BO07571.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10761480..10762423 11..955 99   Plus

BO07571.complete Sequence

1537 bp (1537 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630845

> BO07571.complete
GAAGTTATCAGTCGACATGTTGTTACTGGCGCTAATCGTTGTGATACTAT
CACTGCTCGTCTTCGCGGCCCGACGACGTCATGGATACTGGCAGAGAAGG
GGCATACCGCACGACGAGGTACACCCGCTTTTCGGAAACATCAAGGACTG
GCCAAATAAGCGGCACATTGCCGAGATCTTTCGGGACTATTACTTCAAGT
ACAAGAACTCCGATTACCCATTCGCTGGATTTTTCTTCTTTTTCACCCGC
ACTGCTGTGGTCACCGACATGGAATTGCTCAAGAGGGTGCTGATCAAGGA
CTTCAATCACTTTGAGAATCGGGGAGTCTTCTACAACGAGATCGATGATC
CGCTGTCGGCCACCTTGTTCAGCATCGAGGGTCAGAAGTGGCGTCATCTG
CGGCACAAACTGACACCCACTTTTACGTCCGGCAAAATGAAGAACATGTT
TCCGATTGTTGTGAAAGTTGGAGAAGAAATGGATAAGGTCTTCAGAAGTA
AAACCGCTGCGGATCGGGGTCAAGTTTTGGAGGTTGTGGATCTGGTGGCA
CGGTACACCGCCGATGTGATCGGCAACTGCGCATTCGGTCTCAATTGCAA
CAGCTTGTACGATCCAAAGGCTGAATTTGTGTCAATTGGCAAGCGGGCGA
TCACCGAGCATCGCTACGGGAATATGCTGGATATATTCCTCTTTGGATTT
CCCAAGTTATCGCGCCGCTTACGTCTGAAACTAAATATCCAGGAGGCAGA
GGACTTTTACACCAAGATCGTGAGGGAAACCATTGACTACCGTCTACGGA
CGAAGGAAAAGCGAAATGATTTCATGGACAGTCTGATAGAGATGTATAAG
AATGAGCAGTCGGGAAATTCGGAGGATGGCCTGACCTTTAACGAACTTCT
CGCTCAGGCTTTCATATTTTTTGTGGCTGGGTTTGAGACAAGCTCCACGA
CCATGGGATTCGCTCTATATGAGCTGGCCAGGAACCAGGATGTTCAGGAT
AAACTCAGGGAGGAGATTGGCAATGTGTTCGGCAAGCATAACAAAGAGTT
CACCTACGAGGGAATCAAGGAGATGAAATACCTGGAGCAGGTTGTGATGG
AAACGCTGCGAAAGTACCCAGTACTGGCTCATCTTACAAGAATGACTGAC
ACCGACTTTTCGCCTGAAGATCCAAAATACTTCATTGCCAAGGGAACCAT
TGTTGTGATCCCAGCTTTGGGCATTCACTATGATCCGGACATATATCCGG
AACCGGAGATATTCAAGCCAGAACGCTTTACCGACGAGGAAATCGCGGCG
AGACCCTCGTGCACTTGGCTTCCATTTGGAGAAGGTCCGCGGAACTGCAT
TGGTCTGCGGTTTGGAATGATGCAAACCTGTGTGGGCTTGGCCTACTTGA
TCAGGGGCTATAAATTCAGTGTTTCCCCGGAAACTCAAATACCCATGAAG
ATTGTCGTTAAGAACATTCTGATATCGGCCGAGAATGGTATCCACCTTAA
AGTGGAGAAGCTCGCCAAAGCAAGCTTTCTAGACCAT

BO07571.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a17-RB 1506 CG10241-PB 1..1503 17..1519 7515 100 Plus
Cyp6a17-RA 1506 CG10241-PA 1..1503 17..1519 7515 100 Plus
Cyp6a23-RA 1509 CG10242-PA 37..1506 50..1519 3075 80.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a17-RB 1727 CG10241-RB 28..1530 17..1519 7515 100 Plus
Cyp6a17-RA 1546 CG10241-RA 28..1530 17..1519 7515 100 Plus
Cyp6a23-RA 1761 CG10242-RA 69..1538 50..1519 3075 80.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14873980..14875063 17..1100 5420 100 Plus
2R 25286936 2R 14875123..14875542 1100..1519 2100 100 Plus
2R 25286936 2R 14875897..14876947 50..1100 2015 79.4 Plus
2R 25286936 2R 14877012..14877431 1100..1519 1065 83.6 Plus
2R 25286936 2R 14882993..14883122 876..1005 290 81.5 Plus
2R 25286936 2R 14878691..14878785 905..999 220 82.1 Plus
2R 25286936 2R 14878162..14878240 373..451 185 82.3 Plus
Blast to na_te.dros performed on 2014-11-27 08:27:01 has no hits.

BO07571.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:45 Download gff for BO07571.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 1..1506 17..1523 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:36 Download gff for BO07571.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 1..1523 11..1534 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:27 Download gff for BO07571.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 33..1530 22..1521 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:45 Download gff for BO07571.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 1..1523 11..1534 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:02 Download gff for BO07571.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 33..1530 22..1521 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:02 Download gff for BO07571.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14873985..14875063 22..1100 100 -> Plus
2R 14875124..14875542 1101..1521 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:27 Download gff for BO07571.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10761490..10762568 22..1100 100 -> Plus
arm_2R 10762629..10763047 1101..1521 99   Plus

BO07571.pep Sequence

Translation from 16 to 1537

> BO07571.pep
MLLLALIVVILSLLVFAARRRHGYWQRRGIPHDEVHPLFGNIKDWPNKRH
IAEIFRDYYFKYKNSDYPFAGFFFFFTRTAVVTDMELLKRVLIKDFNHFE
NRGVFYNEIDDPLSATLFSIEGQKWRHLRHKLTPTFTSGKMKNMFPIVVK
VGEEMDKVFRSKTAADRGQVLEVVDLVARYTADVIGNCAFGLNCNSLYDP
KAEFVSIGKRAITEHRYGNMLDIFLFGFPKLSRRLRLKLNIQEAEDFYTK
IVRETIDYRLRTKEKRNDFMDSLIEMYKNEQSGNSEDGLTFNELLAQAFI
FFVAGFETSSTTMGFALYELARNQDVQDKLREEIGNVFGKHNKEFTYEGI
KEMKYLEQVVMETLRKYPVLAHLTRMTDTDFSPEDPKYFIAKGTIVVIPA
LGIHYDPDIYPEPEIFKPERFTDEEIAARPSCTWLPFGEGPRNCIGLRFG
MMQTCVGLAYLIRGYKFSVSPETQIPMKIVVKNILISAENGIHLKVEKLA
KASFLDH

BO07571.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a17-PB 501 CG10241-PB 1..501 1..501 2630 100 Plus
Cyp6a17-PA 501 CG10241-PA 1..501 1..501 2630 100 Plus
Cyp6a23-PA 502 CG10242-PA 3..502 2..501 2283 84.4 Plus
Cyp6a20-PB 501 CG10245-PB 3..501 2..499 1434 52.8 Plus
Cyp6a19-PA 503 CG10243-PA 3..502 2..501 1370 50.7 Plus