Clone Sequence Records
BO07571.3prime Sequence
924 bp (843 high quality bases) assembled on 2006-01-06
> BO07571.3prime
ATGGTCTAGAAAGCTTGCTTTGGCGAGCTTCTCCACTTTAAGGTGGATAC
CATTCTCGGCCGATATCAGAATGTTCTTAACGACAATCTTCATGGGTATT
TGAGTTTCCGGGGAAACACTGAATTTATAGCCCCTGATCAAGTAGGCCAA
GCCCACACAGGTTTGCATCATTCCAAACCGCAGACCAATGCAGTTCCGCG
GACCTTCTCCAAATGGAAGCCAAGTGCACGAGGGTCTCGCCGCGATTTCC
TCGTCGGTAAAGCGTTCTGGCTTGAATATCTCCGGTTCCGGATATATGTC
CGGATCATAGTGAATGCCCAAAGCTGGGATCACAACAATGGTTCCCTTGG
CAATGAAGTATTTTGGATCTTCAGGCGAAAAGTCGGTGTCAGTCATTCTT
GTAAGATGAGCCAGTACTGGGTACTTTCGCAGCGTTTCCATCACAACCTG
CTCCAGGTATTTCATCTCCTTGATTCCCTCGTAGGTGAACTCTTTGTTAT
GCTTGCCGAACACATTGCCAATCTCCTCCCTGAGTTTATCCTGAACATCC
TGGTTCCTGGCCAGCTCATATAGAGCGAATCCCATGGTCGTGGAGCTTGT
CTCAAACCCAGCCACAAAAAATATGAAAGCCTGAGCGAGAAGTTCGTTAA
AGGTCAGGCCATCCTCCGAATTTCCCGACTGCTCATTCTTATACATCTCT
ATCAGACTGTCCATGAAATCATTTCGCTTTTCCTTCGTCCGTAGACGGTA
GTCAATGGTTTCCCTCACGATCTTGGTGTAAAAGTCCTCTGCCTCCTGGA
TATTTAGTTTCAGACGTAAGCGGCGCGATAACTTGGGAAATCAAAGAGGA
ATATTCCAGCATATTCCCGTAGCGATGCTCGGTGATCGCCCGCTTGCCAT
TGACACAATTCAGCCTTTGGATCG
BO07571.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10241-PA | 1506 | Cyp6a17-RA | 680..1503 | 842..19 | 4120 | 100 | Minus |
CG10242-PA | 1509 | Cyp6a23-RA | 1144..1246 | 381..279 | 290 | 91.2 | Minus |
CG10241-PA | 1506 | Cyp6a17-RA | 621..665 | 899..855 | 225 | 100 | Minus |
CG10242-PA | 1509 | Cyp6a23-RA | 1279..1382 | 246..143 | 220 | 88.4 | Minus |
CG10242-PA | 1509 | Cyp6a23-RA | 1027..1091 | 498..434 | 150 | 89.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a17-RB | 1727 | CG10241-RB | 621..1530 | 924..19 | 4450 | 99.6 | Minus |
Cyp6a17-RA | 1546 | CG10241-RA | 621..1530 | 924..19 | 4450 | 99.6 | Minus |
Cyp6a23-RA | 1761 | CG10242-RA | 715..1538 | 842..19 | 1705 | 80.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14874573..14875063 | 924..438 | 2255 | 99.2 | Minus |
2R | 25286936 | 2R | 14875123..14875542 | 438..19 | 2100 | 100 | Minus |
2R | 25286936 | 2R | 14877012..14877431 | 438..19 | 1065 | 83.6 | Minus |
2R | 25286936 | 2R | 14876543..14876947 | 842..438 | 645 | 77.3 | Minus |
2R | 25286936 | 2R | 14882993..14883122 | 662..533 | 290 | 81.5 | Minus |
2R | 25286936 | 2R | 14878691..14878785 | 633..539 | 220 | 82.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:26:38 has no hits.
BO07571.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:45 Download gff for
BO07571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10241-PA | 594..1506 | 15..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:37 Download gff for
BO07571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10241-PA | 594..1506 | 15..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:43:45 Download gff for
BO07571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 621..1542 | 4..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:08 Download gff for
BO07571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 621..1542 | 4..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:08 Download gff for
BO07571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14874573..14875063 | 438..924 | 99 | -> | Minus |
2R | 14875124..14875554 | 4..437 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:43:45 Download gff for
BO07571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10762078..10762568 | 438..924 | 99 | -> | Minus |
arm_2R | 10762629..10763059 | 4..437 | 98 | | Minus |
BO07571.5prime Sequence
955 bp (801 high quality bases) assembled on 2006-01-06
> BO07571.5prime
GAAGTTATCAGTCGACATGTTGTTACTGGCGCTAATCGTTGTGATACTAT
CACTGCTCGTCTTCGCGGCCCGACGACGTCATGGATACTGGCAGAGAAGG
GGCATACCGCACGACGAGGTACACCCGCTTTTCGGAAACATCAAGGACTG
GCCAAATAAGCGGCACATTGCCGAGATCTTTCGGGACTATTACTTCAAGT
ACAAGAACTCCGATTACCCATTCGCTGGATTTTTCTTCTTTTTCACCCGC
ACTGCTGTGGTCACCGACATGGAATTGCTCAAGAGGGTGCTGATCAAGGA
CTTCAATCACTTTGAGAATCGGGGAGTCTTCTACAACGAGATCGATGATC
CGCTGTCGGCCACCTTGTTCAGCATCGAGGGTCAGAAGTGGCGTCATCTG
CGGCACAAACTGACACCCACTTTTACGTCCGGCAAAATGAAGAACATGTT
TCCGATTGTTGTGAAAGTTGGAGAAGAAATGGATAAGGTCTTCAGAAGTA
AAACCGCTGCGGATCGGGGTCAAGTTTTGGAGGTTGTGGATCTGGTGGCA
CGGTACACCGCCGATGTGATCGGCAACTGCGCATTCGGTCTCAATTGCAA
CAGCTTGTACGATCCAAAGGCTGAATTTGTGTCAATTGGCAAGCGGGCGA
TCACCGAGCATCGCTACGGGAATATGCTGGATATATTCCTCTTTGGATTT
CCCAAGTTATCGCGCCGCTTACGTCTGAAACTAAATATCCAGGAGGCAGA
GGACTTTTACACCAAGATCGTGAGGGAAACCATTGACTACCGTCTACGGA
CGAAGGAAAAGCGAAATGATTTCATGGACAGTCTGATAGAGATGTATAAG
AATGAGCAGTCGGGAAATTCGGAGGATGGCCTGACCTTTTACGAACTTCT
CGCTCAGGCTTTCATATTTTTTGTGGCTGGGTTTGAGACAAGCTCCACGA
CCATG
BO07571.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10241-PA | 1506 | Cyp6a17-RA | 1..939 | 17..955 | 4670 | 99.8 | Plus |
CG10242-PA | 1509 | Cyp6a23-RA | 222..470 | 235..483 | 870 | 93.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a17-RB | 1727 | CG10241-RB | 28..966 | 17..955 | 4680 | 99.9 | Plus |
Cyp6a17-RA | 1546 | CG10241-RA | 28..966 | 17..955 | 4680 | 99.9 | Plus |
Cyp6a23-RA | 1761 | CG10242-RA | 69..974 | 50..955 | 1745 | 79.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14873980..14874918 | 17..955 | 4680 | 99.9 | Plus |
2R | 25286936 | 2R | 14875897..14876802 | 50..955 | 1725 | 79.4 | Plus |
2R | 25286936 | 2R | 14878162..14878240 | 373..451 | 185 | 82.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:37:57 has no hits.
BO07571.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:46 Download gff for
BO07571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10241-PA | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:38 Download gff for
BO07571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10241-PA | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:27:04 Download gff for
BO07571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 23..966 | 11..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:52 Download gff for
BO07571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 23..966 | 11..955 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:52 Download gff for
BO07571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14873975..14874918 | 11..955 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:27:04 Download gff for
BO07571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10761480..10762423 | 11..955 | 99 | | Plus |
BO07571.complete Sequence
1537 bp (1537 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630845
> BO07571.complete
GAAGTTATCAGTCGACATGTTGTTACTGGCGCTAATCGTTGTGATACTAT
CACTGCTCGTCTTCGCGGCCCGACGACGTCATGGATACTGGCAGAGAAGG
GGCATACCGCACGACGAGGTACACCCGCTTTTCGGAAACATCAAGGACTG
GCCAAATAAGCGGCACATTGCCGAGATCTTTCGGGACTATTACTTCAAGT
ACAAGAACTCCGATTACCCATTCGCTGGATTTTTCTTCTTTTTCACCCGC
ACTGCTGTGGTCACCGACATGGAATTGCTCAAGAGGGTGCTGATCAAGGA
CTTCAATCACTTTGAGAATCGGGGAGTCTTCTACAACGAGATCGATGATC
CGCTGTCGGCCACCTTGTTCAGCATCGAGGGTCAGAAGTGGCGTCATCTG
CGGCACAAACTGACACCCACTTTTACGTCCGGCAAAATGAAGAACATGTT
TCCGATTGTTGTGAAAGTTGGAGAAGAAATGGATAAGGTCTTCAGAAGTA
AAACCGCTGCGGATCGGGGTCAAGTTTTGGAGGTTGTGGATCTGGTGGCA
CGGTACACCGCCGATGTGATCGGCAACTGCGCATTCGGTCTCAATTGCAA
CAGCTTGTACGATCCAAAGGCTGAATTTGTGTCAATTGGCAAGCGGGCGA
TCACCGAGCATCGCTACGGGAATATGCTGGATATATTCCTCTTTGGATTT
CCCAAGTTATCGCGCCGCTTACGTCTGAAACTAAATATCCAGGAGGCAGA
GGACTTTTACACCAAGATCGTGAGGGAAACCATTGACTACCGTCTACGGA
CGAAGGAAAAGCGAAATGATTTCATGGACAGTCTGATAGAGATGTATAAG
AATGAGCAGTCGGGAAATTCGGAGGATGGCCTGACCTTTAACGAACTTCT
CGCTCAGGCTTTCATATTTTTTGTGGCTGGGTTTGAGACAAGCTCCACGA
CCATGGGATTCGCTCTATATGAGCTGGCCAGGAACCAGGATGTTCAGGAT
AAACTCAGGGAGGAGATTGGCAATGTGTTCGGCAAGCATAACAAAGAGTT
CACCTACGAGGGAATCAAGGAGATGAAATACCTGGAGCAGGTTGTGATGG
AAACGCTGCGAAAGTACCCAGTACTGGCTCATCTTACAAGAATGACTGAC
ACCGACTTTTCGCCTGAAGATCCAAAATACTTCATTGCCAAGGGAACCAT
TGTTGTGATCCCAGCTTTGGGCATTCACTATGATCCGGACATATATCCGG
AACCGGAGATATTCAAGCCAGAACGCTTTACCGACGAGGAAATCGCGGCG
AGACCCTCGTGCACTTGGCTTCCATTTGGAGAAGGTCCGCGGAACTGCAT
TGGTCTGCGGTTTGGAATGATGCAAACCTGTGTGGGCTTGGCCTACTTGA
TCAGGGGCTATAAATTCAGTGTTTCCCCGGAAACTCAAATACCCATGAAG
ATTGTCGTTAAGAACATTCTGATATCGGCCGAGAATGGTATCCACCTTAA
AGTGGAGAAGCTCGCCAAAGCAAGCTTTCTAGACCAT
BO07571.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a17-RB | 1506 | CG10241-PB | 1..1503 | 17..1519 | 7515 | 100 | Plus |
Cyp6a17-RA | 1506 | CG10241-PA | 1..1503 | 17..1519 | 7515 | 100 | Plus |
Cyp6a23-RA | 1509 | CG10242-PA | 37..1506 | 50..1519 | 3075 | 80.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a17-RB | 1727 | CG10241-RB | 28..1530 | 17..1519 | 7515 | 100 | Plus |
Cyp6a17-RA | 1546 | CG10241-RA | 28..1530 | 17..1519 | 7515 | 100 | Plus |
Cyp6a23-RA | 1761 | CG10242-RA | 69..1538 | 50..1519 | 3075 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14873980..14875063 | 17..1100 | 5420 | 100 | Plus |
2R | 25286936 | 2R | 14875123..14875542 | 1100..1519 | 2100 | 100 | Plus |
2R | 25286936 | 2R | 14875897..14876947 | 50..1100 | 2015 | 79.4 | Plus |
2R | 25286936 | 2R | 14877012..14877431 | 1100..1519 | 1065 | 83.6 | Plus |
2R | 25286936 | 2R | 14882993..14883122 | 876..1005 | 290 | 81.5 | Plus |
2R | 25286936 | 2R | 14878691..14878785 | 905..999 | 220 | 82.1 | Plus |
2R | 25286936 | 2R | 14878162..14878240 | 373..451 | 185 | 82.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:27:01 has no hits.
BO07571.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:45 Download gff for
BO07571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 1..1506 | 17..1523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:36 Download gff for
BO07571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 1..1523 | 11..1534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:27 Download gff for
BO07571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 33..1530 | 22..1521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:45 Download gff for
BO07571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 1..1523 | 11..1534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:02 Download gff for
BO07571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 33..1530 | 22..1521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:02 Download gff for
BO07571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14873985..14875063 | 22..1100 | 100 | -> | Plus |
2R | 14875124..14875542 | 1101..1521 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:27 Download gff for
BO07571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10761490..10762568 | 22..1100 | 100 | -> | Plus |
arm_2R | 10762629..10763047 | 1101..1521 | 99 | | Plus |
BO07571.pep Sequence
Translation from 16 to 1537
> BO07571.pep
MLLLALIVVILSLLVFAARRRHGYWQRRGIPHDEVHPLFGNIKDWPNKRH
IAEIFRDYYFKYKNSDYPFAGFFFFFTRTAVVTDMELLKRVLIKDFNHFE
NRGVFYNEIDDPLSATLFSIEGQKWRHLRHKLTPTFTSGKMKNMFPIVVK
VGEEMDKVFRSKTAADRGQVLEVVDLVARYTADVIGNCAFGLNCNSLYDP
KAEFVSIGKRAITEHRYGNMLDIFLFGFPKLSRRLRLKLNIQEAEDFYTK
IVRETIDYRLRTKEKRNDFMDSLIEMYKNEQSGNSEDGLTFNELLAQAFI
FFVAGFETSSTTMGFALYELARNQDVQDKLREEIGNVFGKHNKEFTYEGI
KEMKYLEQVVMETLRKYPVLAHLTRMTDTDFSPEDPKYFIAKGTIVVIPA
LGIHYDPDIYPEPEIFKPERFTDEEIAARPSCTWLPFGEGPRNCIGLRFG
MMQTCVGLAYLIRGYKFSVSPETQIPMKIVVKNILISAENGIHLKVEKLA
KASFLDH
BO07571.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a17-PB | 501 | CG10241-PB | 1..501 | 1..501 | 2630 | 100 | Plus |
Cyp6a17-PA | 501 | CG10241-PA | 1..501 | 1..501 | 2630 | 100 | Plus |
Cyp6a23-PA | 502 | CG10242-PA | 3..502 | 2..501 | 2283 | 84.4 | Plus |
Cyp6a20-PB | 501 | CG10245-PB | 3..501 | 2..499 | 1434 | 52.8 | Plus |
Cyp6a19-PA | 503 | CG10243-PA | 3..502 | 2..501 | 1370 | 50.7 | Plus |