Clone Sequence Records
BO07574.3prime Sequence
963 bp (902 high quality bases) assembled on 2006-01-06
> BO07574.3prime
ATGGTCTAGAAAGCTTGCGTGAAATTCAAATTGGTATCCGCGGTCCACAA
AGCTCAGACCGCGTTCCGAGTCGACTGGAAAGTCGGCGGTGAAGACAATA
TATCCTCTATATTCCAAAGAGCTCTTTAGGTTCGCTCTATCCACAAAGTC
CTCAAAGCCACTTAGGTCGTAGTAGAGCTTCAGAGGTGGCGAACGTCCAA
CTCCCGTCTTCTGCTTGAACGGCTCCCGCCGCTTAAGAATACTCAAGGCC
CGTGGCAAAAATGTTGGCGTCAGATTTCGGCAGTAGGACACGTCGAGGTG
TTCCAATCGTGGACAGAGTTCCACGAATTCTAAGAGGATTTCGTCGCTTA
GGTCATTCCAGTTGCGCACGCAGAGCAGCTGCAGCTCTGTCATACAGGTA
TAGCGCTTTAGGTAGTCTGCCGAATGAGTCCAGCTGCAAATGGCCAGGCG
CTTCAGCCTGCGATGCGTCCAGATGGGCAGCTTCTCATCCCAGCCCGGTT
CAAGGGGCATATAGTACCCGTCCACGGCAAAGCCGACGATGTCCTTGGCC
TTGAAAGCCATGATCTCGTAGAACTCGCTGACCTCGCGGATCTTGTGGTC
ATAGCTATCCGGACTGACCAGCGGGGGGATATGCCACTCGTTGTCCAGCA
GCACCACCAGTTTCCTGAGGGAGGGCAGCTCCAGAACGGCGGGTAGAATG
GGTTTCAAGGTGGCCAGATTGAGCTTAAGATCAGTGAGGTTCTTAAAGCT
CTGCANGCAGTTTCCCAGCTGAAGTTTACTGATCATATCGTACGTCCTAA
TGTCCAGGACCCGAAGATCGTGCAGCGTGCGGCACACCTCGTCCAGGTAC
TTCTGCTGCAGCTCAAACGCCTTGTGCTGGTCCTCGTAGAGGTGCAGCTC
CTGCANGTGCTGGAAGTTGGATAGGTACCGCCCGTCGATGGGTGTGGTAA
GGCGCACCTTTTT
BO07574.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7148-PA | 1365 | CG7148-RA | 418..1362 | 963..19 | 4662 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7148-RA | 1594 | CG7148-RA | 575..1519 | 963..19 | 4688 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21830790..21831487 | 133..830 | 3479 | 99.9 | Plus |
3L | 28110227 | 3L | 21831546..21831679 | 830..963 | 644 | 98.5 | Plus |
3L | 28110227 | 3L | 21830619..21830733 | 19..133 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:41:34 has no hits.
BO07574.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:51 Download gff for
BO07574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-PA | 418..1365 | 16..963 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:45 Download gff for
BO07574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-PA | 418..1365 | 16..963 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:07:12 Download gff for
BO07574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 575..1525 | 12..963 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:52 Download gff for
BO07574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 575..1525 | 12..963 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:52 Download gff for
BO07574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21830613..21830732 | 12..132 | 96 | <- | Plus |
3L | 21830790..21831486 | 133..829 | 99 | <- | Plus |
3L | 21831546..21831679 | 830..963 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:07:12 Download gff for
BO07574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21823713..21823832 | 12..132 | 96 | <- | Plus |
arm_3L | 21823890..21824586 | 133..829 | 99 | <- | Plus |
arm_3L | 21824646..21824779 | 830..963 | 98 | | Plus |
BO07574.5prime Sequence
962 bp (841 high quality bases) assembled on 2006-01-06
> BO07574.5prime
GAAGTTATCAGTCGACATGGCTTCCGAGCCGAGATCCCTAATTCTGCAAT
TGGACGACGACTGTCTGGCCGAGATTTTCGATCGCTTGCAGGACCTGCCG
TCGGAAGTGTCCTTCGCGAGGACTTGCCGGCGAGTGCAGTACATATGTCT
GAGCAAGTGGCGCACCAGCCATGCCTACGAGCAACTGGATCTGGAGAAGT
GGCGGGTACTGTTGCCCAATCATGAAGACCTGGTCTACTTCCTAACCCAA
ATGCGTCCGTACATCAGAGAAATGGGCGGCAGCAGCTGTCTGTGCTCCAT
TCTAAAAGATCTGGACGAAATGCACATTGCAGAGCTGCCCATGGTGACCA
GCTTCTACTACGACCCAGACGGCGTCGATTGCTATCCCACGAACCGAAGC
ATCCGCAAGCTGGCCCGCCTGCTGCCGGGCTTGAAAAAGTTGCGCCTTAC
CACACCCATCGACGGGCGGTACCTATCCAACTTCCAGCACCTGCAGGAGC
TGCACCTCTACGAGGACCAGCACAAGGCGTTTGAGCTGCAGCAGAAGTAC
CTGGACGAGGTGTGCCGCACGCTGCACGATCTTCGGGTCCTGGACATTAG
GACGTACGATATGATCAGTAAACTTCAGCTGGGAAACTGCCTGCAGAGCT
TTAAGAACCTCACTGATCTTAAGCTCAATCTGGCCACCTTGAAACCCATT
CTACCCGCCGTTCTGGAGCTGCCCTCCCTCAGGAAACTGGTGGTGCTGCT
GGACAACGAGTGGCATATCCCCCCGCTGGTCAGTCCGGATAGCTATGACC
ACAAGATCCGCGAGGTCAGCGAGTTCTACGAGATCATGGCTTTTCAGGGC
CAGGACATCGTCGGCTTTGCCGTGGACGGGTACTATATGCCCCTTTGACC
CGGCTGGGATGAGAAGCTGCCCATCTGGACGCATCGCAGGCTGAAGCGCC
TGGCCTTTGCAG
BO07574.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7148-PA | 1365 | CG7148-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
CG7148-PA | 1365 | CG7148-RA | 836..939 | 852..955 | 445 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7148-RA | 1594 | CG7148-RA | 157..1104 | 16..962 | 4610 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21831546..21832097 | 567..16 | 2760 | 100 | Minus |
3L | 28110227 | 3L | 21831099..21831487 | 955..567 | 1840 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:25:50 has no hits.
BO07574.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:52 Download gff for
BO07574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-PA | 1..947 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:46 Download gff for
BO07574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-PA | 1..947 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:12:01 Download gff for
BO07574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 157..1104 | 16..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:55:44 Download gff for
BO07574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 157..1104 | 16..962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:55:44 Download gff for
BO07574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21831091..21831486 | 568..962 | 98 | <- | Minus |
3L | 21831546..21832097 | 16..567 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:12:01 Download gff for
BO07574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21824191..21824586 | 568..962 | 98 | <- | Minus |
arm_3L | 21824646..21825197 | 16..567 | 100 | -> | Minus |
BO07574.complete Sequence
1396 bp (1396 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630846
> BO07574.complete
GAAGTTATCAGTCGACATGGCTTCCGAGCCGAGATCCCTAATTCTGCAAT
TGGACGACGACTGTCTGGCCGAGATTTTCGATCGCTTGCAGGACCTGCCG
TCGGAAGTGTCCTTCGCGAGGACTTGCCGGCGAGTGCAGTACATATGTCT
GAGCAAGTGGCGCACCAGCCATGCCTACGAGCAACTGGATCTGGAGAAGT
GGCGGGTACTGTTGCCCAATCATGAAGACCTGGTCTACTTCCTAACCCAA
ATGCGTCCGTACATCAGAGAAATGGGCGGCAGCAGCTGTCTGTGCTCCAT
TCTAAAAGATCTGGACGAAATGCACATTGCAGAGCTGCCCATGGTGACCA
GCTTCTACTACGACCCAGACGGCGTCGATTGCTATCCCACGAACCGAAGC
ATCCGCAAGCTGGCCCGCCTGCTGCCGGGCTTGAAAAAGTTGCGCCTTAC
CACACCCATCGACGGGCGGTACCTATCCAACTTCCAGCACCTGCAGGAGC
TGCACCTCTACGAGGACCAGCACAAGGCGTTTGAGCTGCAGCAGAAGTAC
CTGGACGAGGTGTGCCGCACGCTGCACGATCTTCGGGTCCTGGACATTAG
GACGTACGATATGATCAGTAAACTTCAGCTGGGAAACTGCCTGCAGAGCT
TTAAGAACCTCACTGATCTTAAGCTCAATCTGGCCACCTTGAAACCCATT
CTACCCGCCGTTCTGGAGCTGCCCTCCCTCAGGAAACTGGTGGTGCTGCT
GGACAACGAGTGGCATATCCCCCCGCTGGTCAGTCCGGATAGCTATGACC
ACAAGATCCGCGAGGTCAGCGAGTTCTACGAGATCATGGCTTTCAAGGCC
AAGGACATCGTCGGCTTTGCCGTGGACGGGTACTATATGCCCCTTGAACC
GGGCTGGGATGAGAAGCTGCCCATCTGGACGCATCGCAGGCTGAAGCGCC
TGGCCATTTGCAGCTGGACTCATTCGGCAGACTACCTAAAGCGCTATACC
TGTATGACAGAGCTGCAGCTGCTCTGCGTGCGCAACTGGAATGACCTAAG
CGACGAAATCCTCTTAGAATTCGTGGAACTCTGTCCACGATTGGAACACC
TCGACGTGTCCTACTGCCGAAATCTGACGCCAACATTTTTGCCACGGGCC
TTGAGTATTCTTAAGCGGCGGGAGCCGTTCAAGCAGAAGACGGGAGTTGG
ACGTTCGCCACCTCTGAAGCTCTACTACGACCTAAGTGGCTTTGAGGACT
TTGTGGATAGAGCGAACCTAAAGAGCTCTTTGGAATATAGAGGATATATT
GTCTTCACCGCCGACTTTCCAGTCGACTCGGAACGCGGTCTGAGCTTTGT
GGACCGCGGATACCAATTTGAATTTCACGCAAGCTTTCTAGACCAT
BO07574.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7148-RA | 1365 | CG7148-PA | 1..1362 | 17..1378 | 6810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7148-RA | 1594 | CG7148-RA | 157..1519 | 16..1378 | 6815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21830790..21831487 | 1264..567 | 3490 | 100 | Minus |
3L | 28110227 | 3L | 21831546..21832097 | 567..16 | 2760 | 100 | Minus |
3L | 28110227 | 3L | 21830619..21830733 | 1378..1264 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:33:26 has no hits.
BO07574.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:46 Download gff for
BO07574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 1..1365 | 17..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:38 Download gff for
BO07574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 109..1477 | 16..1385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:54 Download gff for
BO07574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 158..1519 | 17..1380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:47 Download gff for
BO07574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 109..1477 | 16..1385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:57 Download gff for
BO07574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 158..1519 | 17..1380 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:57 Download gff for
BO07574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21830615..21830732 | 1265..1380 | 98 | <- | Minus |
3L | 21830790..21831486 | 568..1264 | 100 | <- | Minus |
3L | 21831546..21832096 | 17..567 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:54 Download gff for
BO07574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21823715..21823832 | 1265..1380 | 98 | <- | Minus |
arm_3L | 21823890..21824586 | 568..1264 | 100 | <- | Minus |
arm_3L | 21824646..21825196 | 17..567 | 100 | | Minus |
BO07574.pep Sequence
Translation from 16 to 1396
> BO07574.pep
MASEPRSLILQLDDDCLAEIFDRLQDLPSEVSFARTCRRVQYICLSKWRT
SHAYEQLDLEKWRVLLPNHEDLVYFLTQMRPYIREMGGSSCLCSILKDLD
EMHIAELPMVTSFYYDPDGVDCYPTNRSIRKLARLLPGLKKLRLTTPIDG
RYLSNFQHLQELHLYEDQHKAFELQQKYLDEVCRTLHDLRVLDIRTYDMI
SKLQLGNCLQSFKNLTDLKLNLATLKPILPAVLELPSLRKLVVLLDNEWH
IPPLVSPDSYDHKIREVSEFYEIMAFKAKDIVGFAVDGYYMPLEPGWDEK
LPIWTHRRLKRLAICSWTHSADYLKRYTCMTELQLLCVRNWNDLSDEILL
EFVELCPRLEHLDVSYCRNLTPTFLPRALSILKRREPFKQKTGVGRSPPL
KLYYDLSGFEDFVDRANLKSSLEYRGYIVFTADFPVDSERGLSFVDRGYQ
FEFHASFLDH
BO07574.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7148-PA | 454 | CG7148-PA | 1..454 | 1..454 | 2419 | 100 | Plus |
CG14317-PA | 448 | CG14317-PA | 43..374 | 19..362 | 247 | 25.2 | Plus |