Clone Sequence Records
BO07576.5prime Sequence
834 bp (832 high quality bases) assembled on 2006-01-06
> BO07576.5prime
GAAGTTATCAGTCGACATGAACAAACTACGTAATGTTCTGAAGTCAGTAG
TCCAGCGTCGTCTGCCCGTTTCCCATTTGATCCAAATACGTACCGCCTGC
GGTGGTGAATCCAAGTCCTCCAAGGGTCTTGTGGTCGGTGTTTATCAGAA
GGAGAACGATAATGACCCAAAGCTAACGCCAGCTGGCGAAAAGGTCAATG
ATCGGCTGCATGGCAAGTTGCAGGAGATGATTTGCCAGAGCAAAATCACT
GGCCACTTGGGCAGGGGCAAGATATTCAACAACATAGATCCAGAGTTTCG
CAGTATGGCAGTGGTTGGTGTCGGCCTCGAGGGCATCGGCTTCAACGAAC
TGGAAATGCTCGATGAGGGCATGGAGAATGTACGTGTGGCGGCTGGAATT
GGAGCCCGATCCTTGCAAGAGATTGGCGTTTCGGAAGTCTTTGTAGATGG
CATGGACTATGCCGAACAGGCGGCCGAGGGCGCCGTTCTGGCCGTTTGGC
GATATTGTGACATGAACTCCAAGAGGAAGCCACCACACATCCCCAAACTG
GAGCTGTACGAATCTCCGGACTATGAAGGTTGGACCCGGGGTGTCTTCAA
GGCGGAGGCTCAGAATTTAGCTCGCAGGATGTGTGATACACCTGCCTGTT
GCATGACACCAACGCTTTTTGCCCAGGCCACGGTAGATGCGCTGTGCCCC
TGTGGCATTACCGTCGAAATCCGCACCATGGAGTGGATTGAACAGCAGCG
TCTTCATTCGTTCCTCATGATTGCCAAGGGCAGCTGTGAGCCACCGGTTC
TGATGGAGATCACCTATTGCGGCACCAATCCCGA
BO07576.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32064-PA | 1575 | CG32064-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
| CG13340-PA | 1584 | CG13340-RA | 319..372 | 323..376 | 145 | 90.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap4-RA | 2074 | CG32064-RA | 314..1131 | 17..834 | 4090 | 100 | Plus |
| S-Lap3-RD | 2640 | CG32063-RD | 368..1020 | 174..826 | 600 | 73.7 | Plus |
| S-Lap3-RC | 2146 | CG32063-RC | 368..1020 | 174..826 | 600 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10491174..10491991 | 17..834 | 4090 | 100 | Plus |
| 3L | 28110227 | 3L | 10466702..10467354 | 174..826 | 565 | 72.4 | Plus |
| 2R | 25286936 | 2R | 13779121..13779636 | 826..311 | 540 | 73.6 | Minus |
| 2R | 25286936 | 2R | 13597189..13597708 | 306..825 | 320 | 70.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:42:21 has no hits.
BO07576.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:56 Download gff for
BO07576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32064-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:51 Download gff for
BO07576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32064-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:07:14 Download gff for
BO07576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap4-RA | 309..1130 | 12..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:02 Download gff for
BO07576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap4-RA | 309..1130 | 12..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:02 Download gff for
BO07576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10491169..10491990 | 12..833 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:07:14 Download gff for
BO07576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10484269..10485090 | 12..833 | 99 | | Plus |
BO07576.3prime Sequence
829 bp (786 high quality bases) assembled on 2006-01-06
> BO07576.3prime
ATGGTCTAGAAAGCTTGCCTTTTGGTTGGCGGGACAGGCCATTTGGTAGA
GAAACTGCGCCAGAGTGCGAGTTGGCCTGCCTGTCATGTACTTTGCGGTG
AGATAGGGTACCAGTCCATACTTGGTTAGCAGTCCAGTGCCCCGGGTGTC
CAGATGAGCCCAATCCACACAGGGTACCAATTCGTGGAGTACCGCTGCCG
CCAAACAGGAATTCGCCAGTCCTCGACCATCATTGCTTAAATCATATCCC
ATTTCATCGGTGATTTGTTTCCTATAATAATTCCACAATGGCAAACGCCA
AACTCGATCGCCAGTCAAAGCTCCTGCGGACTGGAACTGCTTCCAGATGT
AATGGGAATTGGAGAATATACCGGTGGCTCCGCCGCCGAAAGCCTTCTTC
ACACCTGAACCCAAGGTGGCCACATCGACTACCAAGCGAGGCTTGTATGT
GCTCTGTCCGTAGAGCAAGGGATCTGCCATTACGACGACTCCGGCCTTGT
CCAGATTTCGTACAGCCATCGATTTGTGATTCATTAGGGTGACCACATCG
CCTGGCTTACAGGCCATTCCCGATGGCATGTTCTCGCACAGCGGGATGAT
GCAGCAGACATTGATGGGCAGGGCCAGTGCCGCAACGCAACGCATCATGG
CCACACAGGATGCAGCTCCCGACATGCAAGCCCTGTACTCCTCCATTCCC
CTGCATTTCCTCAGATTCATGGCGCCCGAGTTGAAGGTAATGCCCTTGCC
CAGGAACAAAATGGGTTTGTCCTCGGGATTGGTGCCGCAATAGGTGATCT
CCATCAGAACCGGTGGCTCACAGCTGCCC
BO07576.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32064-PA | 1575 | CG32064-RA | 762..1572 | 829..19 | 4055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap4-RA | 2074 | CG32064-RA | 1075..1885 | 829..19 | 4055 | 100 | Minus |
| S-Lap7-RB | 2030 | CG13340-RB | 1077..1874 | 829..32 | 945 | 74.7 | Minus |
| S-Lap7-RA | 2122 | CG13340-RA | 1077..1874 | 829..32 | 945 | 74.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10491935..10492745 | 829..19 | 4055 | 100 | Minus |
| 2R | 25286936 | 2R | 13778372..13779169 | 32..829 | 945 | 74.6 | Plus |
| 2R | 25286936 | 2R | 13597896..13598075 | 594..415 | 195 | 73.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:52:03 has no hits.
BO07576.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:22:55 Download gff for
BO07576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32064-PA | 762..1575 | 16..829 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:50 Download gff for
BO07576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32064-PA | 762..1575 | 16..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:22:37 Download gff for
BO07576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap4-RA | 1075..1891 | 12..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:22:01 Download gff for
BO07576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap4-RA | 1075..1891 | 12..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:22:01 Download gff for
BO07576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10491935..10492751 | 12..829 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:22:37 Download gff for
BO07576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10485035..10485851 | 12..829 | 99 | | Minus |
BO07576.complete Sequence
1606 bp (1606 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630848
> BO07576.complete
GAAGTTATCAGTCGACATGAACAAACTACGTAATGTTCTGAAGTCAGTAG
TCCAGCGTCGTCTGCCCGTTTCCCATTTGATCCAAATACGTACCGCCTGC
GGTGGTGAATCCAAGTCCTCCAAGGGTCTTGTGGTCGGTGTTTATCAGAA
GGAGAACGATAATGACCCAAAGCTAACGCCAGCTGGCGAAAAGGTCAATG
ATCGGCTGCATGGCAAGTTGCAGGAGATGATTTGCCAGAGCAAAATCACT
GGCCACTTGGGCAGGGGCAAGATATTCAACAACATAGATCCAGAGTTTCG
CAGTATGGCAGTGGTTGGTGTCGGCCTCGAGGGCATCGGCTTCAACGAAC
TGGAAATGCTCGATGAGGGCATGGAGAATGTACGTGTGGCGGCTGGAATT
GGAGCCCGATCCTTGCAAGAGATTGGCGTTTCGGAAGTCTTTGTAGATGG
CATGGACTATGCCGAACAGGCGGCCGAGGGCGCCGTTCTGGCCGTTTGGC
GATATTGTGACATGAACTCCAAGAGGAAGCCACCACACATCCCCAAACTG
GAGCTGTACGAATCTCCGGACTATGAAGGTTGGACCCGGGGTGTCTTCAA
GGCGGAGGCTCAGAATTTAGCTCGCAGGATGTGTGATACACCTGCCTGTT
GCATGACACCAACGCTTTTTGCCCAGGCCACGGTAGATGCGCTGTGCCCC
TGTGGCATTACCGTCGAAATCCGCACCATGGAGTGGATTGAACAGCAGCG
TCTTCATTCGTTCCTCATGATTGCCAAGGGCAGCTGTGAGCCACCGGTTC
TGATGGAGATCACCTATTGCGGCACCAATCCCGAGGACAAACCCATTTTG
TTCCTGGGCAAGGGCATTACCTTCAACTCGGGCGCCATGAATCTGAGGAA
ATGCAGGGGAATGGAGGAGTACAGGGCTTGCATGTCGGGAGCTGCATCCT
GTGTGGCCATGATGCGTTGCGTTGCGGCACTGGCCCTGCCCATCAATGTC
TGCTGCATCATCCCGCTGTGCGAGAACATGCCATCGGGAATGGCCTGTAA
GCCAGGCGATGTGGTCACCCTAATGAATCACAAATCGATGGCTGTACGAA
ATCTGGACAAGGCCGGAGTCGTCGTAATGGCAGATCCCTTGCTCTACGGA
CAGAGCACATACAAGCCTCGCTTGGTAGTCGATGTGGCCACCTTGGGTTC
AGGTGTGAAGAAGGCTTTCGGCGGCGGAGCCACCGGTATATTCTCCAATT
CCCATTACATCTGGAAGCAGTTCCAGTCCGCAGGAGCTTTGACTGGCGAT
CGAGTTTGGCGTTTGCCATTGTGGAATTATTATAGGAAACAAATCACCGA
TGAAATGGGATATGATTTAAGCAATGATGGTCGAGGACTGGCGAATTCCT
GTTTGGCGGCAGCGGTACTCCACGAATTGGTACCCTGTGTGGATTGGGCT
CATCTGGACACCCGGGGCACTGGACTGCTAACCAAGTATGGACTGGTACC
CTATCTCACCGCAAAGTACATGACAGGCAGGCCAACTCGCACTCTGGCGC
AGTTTCTCTACCAAATGGCCTGTCCCGCCAACCAAAAGGCAAGCTTTCTA
GACCAT
BO07576.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap4-RA | 1575 | CG32064-PA | 1..1572 | 17..1588 | 7860 | 100 | Plus |
| S-Lap7-RB | 1584 | CG13340-PB | 307..1571 | 311..1575 | 1375 | 73.9 | Plus |
| S-Lap7-RA | 1584 | CG13340-PA | 307..1571 | 311..1575 | 1375 | 73.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap4-RA | 2074 | CG32064-RA | 314..1885 | 17..1588 | 7860 | 100 | Plus |
| S-Lap7-RB | 2030 | CG13340-RB | 610..1874 | 311..1575 | 1375 | 73.9 | Plus |
| S-Lap7-RA | 2122 | CG13340-RA | 610..1874 | 311..1575 | 1375 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:18:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10491174..10492745 | 17..1588 | 7860 | 100 | Plus |
| 2R | 25286936 | 2R | 13778372..13779636 | 1575..311 | 1375 | 73.9 | Minus |
| 3L | 28110227 | 3L | 10466702..10467804 | 174..1276 | 640 | 71 | Plus |
| 2R | 25286936 | 2R | 13597189..13597760 | 306..877 | 340 | 70.6 | Plus |
| 2R | 25286936 | 2R | 16491863..16492298 | 442..877 | 215 | 70 | Plus |
| 2R | 25286936 | 2R | 13597896..13598075 | 1013..1192 | 195 | 73.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:18:39 has no hits.
BO07576.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:33 Download gff for
BO07576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32064-RA | 1..1575 | 17..1591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:23 Download gff for
BO07576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32064-RA | 309..1891 | 12..1595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:11 Download gff for
BO07576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap4-RA | 314..1885 | 17..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:34 Download gff for
BO07576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32064-RA | 309..1891 | 12..1595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:38 Download gff for
BO07576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap4-RA | 314..1885 | 17..1590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:38 Download gff for
BO07576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10491174..10492745 | 17..1590 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:11 Download gff for
BO07576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10484274..10485845 | 17..1590 | 99 | | Plus |
BO07576.pep Sequence
Translation from 16 to 1606
> BO07576.pep
MNKLRNVLKSVVQRRLPVSHLIQIRTACGGESKSSKGLVVGVYQKENDND
PKLTPAGEKVNDRLHGKLQEMICQSKITGHLGRGKIFNNIDPEFRSMAVV
GVGLEGIGFNELEMLDEGMENVRVAAGIGARSLQEIGVSEVFVDGMDYAE
QAAEGAVLAVWRYCDMNSKRKPPHIPKLELYESPDYEGWTRGVFKAEAQN
LARRMCDTPACCMTPTLFAQATVDALCPCGITVEIRTMEWIEQQRLHSFL
MIAKGSCEPPVLMEITYCGTNPEDKPILFLGKGITFNSGAMNLRKCRGME
EYRACMSGAASCVAMMRCVAALALPINVCCIIPLCENMPSGMACKPGDVV
TLMNHKSMAVRNLDKAGVVVMADPLLYGQSTYKPRLVVDVATLGSGVKKA
FGGGATGIFSNSHYIWKQFQSAGALTGDRVWRLPLWNYYRKQITDEMGYD
LSNDGRGLANSCLAAAVLHELVPCVDWAHLDTRGTGLLTKYGLVPYLTAK
YMTGRPTRTLAQFLYQMACPANQKASFLDH
BO07576.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap4-PA | 524 | CG32064-PA | 1..524 | 1..524 | 2783 | 100 | Plus |
| S-Lap7-PB | 527 | CG13340-PB | 1..524 | 1..520 | 2118 | 74.5 | Plus |
| S-Lap7-PA | 527 | CG13340-PA | 1..524 | 1..520 | 2118 | 74.5 | Plus |
| S-Lap3-PD | 535 | CG32063-PD | 38..535 | 27..524 | 1961 | 71.3 | Plus |
| S-Lap3-PC | 535 | CG32063-PC | 38..535 | 27..524 | 1961 | 71.3 | Plus |
