Clone BO07579 Report

Search the DGRC for BO07579

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:75
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG18266-RA
Protein status:BO07579.pep: validated full length
Sequenced Size:1492

Clone Sequence Records

BO07579.3prime Sequence

944 bp (777 high quality bases) assembled on 2006-01-06

> BO07579.3prime
ATGGTCTAGAAAGCTTGCACGACTGCGCCCCGAATCCTGCGGATCGATAT
TGGACACCCATTGCACGGGATTGATGTAGATGTTGGATATGGTACCGCGC
AGCGTGTCAAAGCCCTGATTGAGGGGAACCGGCTTGGCCCGCTTGTCCAC
CTGTTTCATCCAGTTCTGCCAGGCGCCTTGGCGGCGCTGACGGCGTTCCT
CCTCCAGTTTCTGCTTGTTGCACTGCAGTCGGATCAGGCGTTGTTTTTCC
TGTTGCTGCTGCTCCCGCTTGGCTTGCTCCCACTTCTGCAGACGGTTCTT
TGTGTTCTCGGGAGACACCTTCCTTGTAGGGGCGGTGCTAGAGCTGGAAA
CCGATCCCAAACTGGAGCTAGAGGTCGAGGATTTCTTTTGCTTTTGCCGC
TGCTGCTGCTGCTGCTCCTCCTTGCGACGACACCACTCCTGGAAGTGCTC
CTGGGCATATTTCTGTCGCAGTGCTGCCTCCGCCTCCCGCTTTTCGCGCT
CCTGTTTGGCAGCCAGCAGATTCTTCTGCTTCTCGGCGGCCTTTCGCGCC
TTCCAGTCCTCGAAGGCCTGCGGGCCAGGGCGTTCCTTATGCTCCTCCAG
CTGCTTGTAGCACGTGGACGAGTCAGAGACGACGCTGGCCAGGCTCAGAG
GGGGCATACCGGTGCATCCATCGGTGGACTGCAGAGCACCGCGGTACATG
TCCGACCAGCTGCAGGTGGACATCGAGGATGCGTCATGGTTTTGATTGTT
GCCCGAGCTACTCAGGCTGTATGTCCGACTGGGAATCTGGCCCTGGTTAG
TCTCCTTTACGGAGGCCTGCTTGTAGAANGTCCTGCCGCTCAGCGCATCC
AGATTGTTATCCTTGCAAAAGGTCCTGGTGTTAATGCTGTGCGATTTTTC
CTTCTTGAAAAATGTCCTGCCGCTGATATTGTCAAATTGTCGAC

BO07579.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG18266-PA 1461 CG18266-RA 544..1458 933..19 4506 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG18266-RA 1804 CG18266-RA 638..1564 944..19 4569 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5597470..5598396 944..19 4544 99.6 Minus
Blast to na_te.dros performed 2015-02-10 15:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1059..1171 296..178 157 63 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6859 299..178 143 59.8 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3295..3351 263..207 132 70.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6821 288..195 130 64.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2535 416..186 122 56.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6765..6890 306..186 122 59.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6826 263..178 121 65.6 Minus
Dbuz\BuT6 387 Dbuz\BuT6 BUT6 387bp 153..221 365..432 117 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6816..6925 299..184 114 60.3 Minus

BO07579.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:01 Download gff for BO07579.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18266-PA 532..1461 18..944 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:58 Download gff for BO07579.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18266-PA 532..1461 18..944 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:07:17 Download gff for BO07579.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 638..1564 19..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:17 Download gff for BO07579.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 638..1564 19..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:17 Download gff for BO07579.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5597470..5598396 19..944 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:07:17 Download gff for BO07579.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5597470..5598396 19..944 99   Minus

BO07579.5prime Sequence

901 bp (850 high quality bases) assembled on 2006-01-06

> BO07579.5prime
GAAGTTATCAGTCGACATGGCCTTTGTAGCGCGTCGGAGTAGCGATGGCT
CGGTGGTGGATCGTCAGCAGGTGTCTGGTCGGGAAAAAGTACGTCCAGCT
TCCCAGTCGGACATTAGTGATGAGGATTCGGAGTCGCTGCTGGGCTATAC
AAACCACACCTATGGGGCTCCCACAGTGAGGTATGTTGGCCAGGGTGAAG
ATCGTGAAGCGGTGGAACCTCAGCTAGATTATGAGGATTTTGGGGATTCT
CTGGGGGATCATGCCGACAATTCGGAAAGCGAGACGGATTCCATTTTGAG
TTTCTGCAAGGAACTGGATGAGGAGGAGGCCAACGATGCATTGCTAAATG
GCAGAATGAGCTTCACAGACGAGAAGGCGAAAGTTGAGGATAAAGCGAAT
GCAGATGATGTGTTTCACCGGGTCATGAACAAAGGCGATGAGGCGGCTGC
CACGGACACGGAGACCGTGATGAACTTTGATCACGATGTGCAGAGCCTTA
GCTCCTTAGGCAGCTGCACGCCAACGGTGACGCAACGCGGTGAGGATGTC
GACAATTTGGACAATATCAGCGGCAGGACATTTTTCAAGGAGGAAAAATC
GCACAGCATTAACACCAGGACCTTTTGCAAGGATAACAATCTGGATGCGC
TGAGCGGCAGGACCTTCTACAAGCAGGCCTCCGTAAAGGAGACTAACCAG
GGCCAGATTTCCAGTCGGACATACAGCCTGAGTAGCTCGGGCAACAATCA
AAACCATGACGCATCCTCGATGTCCACCTGCAGCTGGTCGGACATGTACC
GCGGTGCTCTGCAGTCCACCGATGGATGCACCGGTATGCCCCCTCTGAGC
CTGGCCAGCGTCGTCTCTGACTCGTCCACGTGCTACAAGCAGCTGGAGGA
G

BO07579.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG18266-PA 1461 CG18266-RA 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG18266-RA 1804 CG18266-RA 107..991 17..901 4425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5596939..5597823 17..901 4425 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:07:56 has no hits.

BO07579.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:02 Download gff for BO07579.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18266-PA 1..885 17..901 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:07:00 Download gff for BO07579.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18266-PA 1..885 17..901 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:16 Download gff for BO07579.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 105..991 14..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:57 Download gff for BO07579.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 105..991 14..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:57 Download gff for BO07579.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5596937..5597823 14..901 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:16 Download gff for BO07579.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5596937..5597823 14..901 99   Plus

BO07579.complete Sequence

1492 bp (1492 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630849

> BO07579.complete
GAAGTTATCAGTCGACATGGCCTTTGTAGCGCGTCGGAGTAGCGATGGCT
CGGTGGTGGATCGTCAGCAGGTGTCTGGTCGGGAAAAAGTACGTCCAGCT
TCCCAGTCGGACATTAGTGATGAGGATTCGGAGTCGCTGCTGGGCTATAC
AAACCACACCTATGGGGCTCCCACAGTGAGGTATGTTGGCCAGGGTGAAG
ATCGTGAAGCGGTGGAACCTCAGCTAGATTATGAGGATTTTGGGGATTCT
CTGGGGGATCATGCCGACAATTCGGAAAGCGAGACGGATTCCATTTTGAG
TTTCTGCAAGGAACTGGATGAGGAGGAGGCCAACGATGCATTGCTAAATG
GCAGAATGAGCTTCACAGACGAGAAGGCGAAAGTTGAGGATAAAGCGAAT
GCAGATGATGTGTTTCACCGGGTCATGAACAAAGGCGATGAGGCGGCTGC
CACGGACACGGAGACCGTGATGAACTTTGATCACGATGTGCAGAGCCTTA
GCTCCTTAGGCAGCTGCACGCCAACGGTGACGCAACGCGGTGAGGATGTC
GACAATTTGGACAATATCAGCGGCAGGACATTTTTCAAGGAGGAAAAATC
GCACAGCATTAACACCAGGACCTTTTGCAAGGATAACAATCTGGATGCGC
TGAGCGGCAGGACCTTCTACAAGCAGGCCTCCGTAAAGGAGACTAACCAG
GGCCAGATTTCCAGTCGGACATACAGCCTGAGTAGCTCGGGCAACAATCA
AAACCATGACGCATCCTCGATGTCCACCTGCAGCTGGTCGGACATGTACC
GCGGTGCTCTGCAGTCCACCGATGGATGCACCGGTATGCCCCCTCTGAGC
CTGGCCAGCGTCGTCTCTGACTCGTCCACGTGCTACAAGCAGCTGGAGGA
GCATAAGGAACGCCCTGGCCCGCAGGCCTTCGAGGACTGGAAGGCGCGAA
AGGCCGCCGAGAAGCAGAAGAATCTGCTGGCTGCCAAACAGGAGCGCGAA
AAGCGGGAGGCGGAGGCAGCACTGCGACAGAAATATGCCCAGGAGCACTT
CCAGGAGTGGTGTCGTCGCAAGGAGGAGCAGCAGCAGCAGCAGCGGCAAA
AGCAAAAGAAATCCTCGACCTCTAGCTCCAGTTTGGGATCGGTTTCCAGC
TCTAGCACCGCCCCTACAAGGAAGGTGTCTCCCGAGAACACAAAGAACCG
TCTGCAGAAGTGGGAGCAAGCCAAGCGGGAGCAGCAGCAACAGGAAAAAC
AACGCCTGATCCGACTGCAGTGCAACAAGCAGAAACTGGAGGAGGAACGC
CGTCAGCGCCGCCAAGGCGCCTGGCAGAACTGGATGAAACAGGTGGACAA
GCGGGCCAAGCCGGTTCCCCTCAATCAGGGCTTTGACACGCTGCGCGGTA
CCATATCCAACATCTACATCAATCCCGTGCAATGGGTGTCCAATATCGAT
CCGCAGGATTCGGGGCGCAGTCGTGCAAGCTTTCTAGACCAT

BO07579.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG18266-RA 1461 CG18266-PA 1..1458 17..1474 7290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18266-RA 1804 CG18266-RA 107..1564 17..1474 7290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5596939..5598396 17..1474 7290 100 Plus
Blast to na_te.dros performed 2014-11-28 00:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1059..1171 1197..1315 157 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6859 1194..1315 143 59.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3295..3351 1230..1286 132 70.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2535 1077..1307 122 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6816..6925 1194..1309 114 60.3 Plus

BO07579.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:12 Download gff for BO07579.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 1..1461 17..1475 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:53 Download gff for BO07579.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 105..1564 14..1474 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:04 Download gff for BO07579.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 107..1564 17..1476 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:12 Download gff for BO07579.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 105..1564 14..1474 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:37 Download gff for BO07579.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 107..1564 17..1476 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:37 Download gff for BO07579.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5596939..5598396 17..1476 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:04 Download gff for BO07579.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5596939..5598396 17..1476 99   Plus

BO07579.pep Sequence

Translation from 16 to 1492

> BO07579.pep
MAFVARRSSDGSVVDRQQVSGREKVRPASQSDISDEDSESLLGYTNHTYG
APTVRYVGQGEDREAVEPQLDYEDFGDSLGDHADNSESETDSILSFCKEL
DEEEANDALLNGRMSFTDEKAKVEDKANADDVFHRVMNKGDEAAATDTET
VMNFDHDVQSLSSLGSCTPTVTQRGEDVDNLDNISGRTFFKEEKSHSINT
RTFCKDNNLDALSGRTFYKQASVKETNQGQISSRTYSLSSSGNNQNHDAS
SMSTCSWSDMYRGALQSTDGCTGMPPLSLASVVSDSSTCYKQLEEHKERP
GPQAFEDWKARKAAEKQKNLLAAKQEREKREAEAALRQKYAQEHFQEWCR
RKEEQQQQQRQKQKKSSTSSSSLGSVSSSSTAPTRKVSPENTKNRLQKWE
QAKREQQQQEKQRLIRLQCNKQKLEEERRQRRQGAWQNWMKQVDKRAKPV
PLNQGFDTLRGTISNIYINPVQWVSNIDPQDSGRSRASFLDH

BO07579.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG18266-PA 486 CG18266-PA 1..486 1..486 2523 100 Plus
CG14011-PC 388 CG14011-PC 139..388 221..475 333 31.2 Plus
CG14011-PB 388 CG14011-PB 139..388 221..475 333 31.2 Plus
CG14011-PA 388 CG14011-PA 139..388 221..475 333 31.2 Plus
CG7251-PB 321 CG7251-PB 47..316 230..477 311 31.7 Plus