Clone Sequence Records
BO07579.3prime Sequence
944 bp (777 high quality bases) assembled on 2006-01-06
> BO07579.3prime
ATGGTCTAGAAAGCTTGCACGACTGCGCCCCGAATCCTGCGGATCGATAT
TGGACACCCATTGCACGGGATTGATGTAGATGTTGGATATGGTACCGCGC
AGCGTGTCAAAGCCCTGATTGAGGGGAACCGGCTTGGCCCGCTTGTCCAC
CTGTTTCATCCAGTTCTGCCAGGCGCCTTGGCGGCGCTGACGGCGTTCCT
CCTCCAGTTTCTGCTTGTTGCACTGCAGTCGGATCAGGCGTTGTTTTTCC
TGTTGCTGCTGCTCCCGCTTGGCTTGCTCCCACTTCTGCAGACGGTTCTT
TGTGTTCTCGGGAGACACCTTCCTTGTAGGGGCGGTGCTAGAGCTGGAAA
CCGATCCCAAACTGGAGCTAGAGGTCGAGGATTTCTTTTGCTTTTGCCGC
TGCTGCTGCTGCTGCTCCTCCTTGCGACGACACCACTCCTGGAAGTGCTC
CTGGGCATATTTCTGTCGCAGTGCTGCCTCCGCCTCCCGCTTTTCGCGCT
CCTGTTTGGCAGCCAGCAGATTCTTCTGCTTCTCGGCGGCCTTTCGCGCC
TTCCAGTCCTCGAAGGCCTGCGGGCCAGGGCGTTCCTTATGCTCCTCCAG
CTGCTTGTAGCACGTGGACGAGTCAGAGACGACGCTGGCCAGGCTCAGAG
GGGGCATACCGGTGCATCCATCGGTGGACTGCAGAGCACCGCGGTACATG
TCCGACCAGCTGCAGGTGGACATCGAGGATGCGTCATGGTTTTGATTGTT
GCCCGAGCTACTCAGGCTGTATGTCCGACTGGGAATCTGGCCCTGGTTAG
TCTCCTTTACGGAGGCCTGCTTGTAGAANGTCCTGCCGCTCAGCGCATCC
AGATTGTTATCCTTGCAAAAGGTCCTGGTGTTAATGCTGTGCGATTTTTC
CTTCTTGAAAAATGTCCTGCCGCTGATATTGTCAAATTGTCGAC
BO07579.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18266-PA | 1461 | CG18266-RA | 544..1458 | 933..19 | 4506 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:43:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18266-RA | 1804 | CG18266-RA | 638..1564 | 944..19 | 4569 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:43:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5597470..5598396 | 944..19 | 4544 | 99.6 | Minus |
Blast to na_te.dros performed 2015-02-10 15:43:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1059..1171 | 296..178 | 157 | 63 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6859 | 299..178 | 143 | 59.8 | Minus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3295..3351 | 263..207 | 132 | 70.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6821 | 288..195 | 130 | 64.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2535 | 416..186 | 122 | 56.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6890 | 306..186 | 122 | 59.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6826 | 263..178 | 121 | 65.6 | Minus |
Dbuz\BuT6 | 387 | Dbuz\BuT6 BUT6 387bp | 153..221 | 365..432 | 117 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6816..6925 | 299..184 | 114 | 60.3 | Minus |
BO07579.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:01 Download gff for
BO07579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-PA | 532..1461 | 18..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:58 Download gff for
BO07579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-PA | 532..1461 | 18..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:07:17 Download gff for
BO07579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 638..1564 | 19..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:17 Download gff for
BO07579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 638..1564 | 19..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:17 Download gff for
BO07579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5597470..5598396 | 19..944 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:07:17 Download gff for
BO07579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5597470..5598396 | 19..944 | 99 | | Minus |
BO07579.5prime Sequence
901 bp (850 high quality bases) assembled on 2006-01-06
> BO07579.5prime
GAAGTTATCAGTCGACATGGCCTTTGTAGCGCGTCGGAGTAGCGATGGCT
CGGTGGTGGATCGTCAGCAGGTGTCTGGTCGGGAAAAAGTACGTCCAGCT
TCCCAGTCGGACATTAGTGATGAGGATTCGGAGTCGCTGCTGGGCTATAC
AAACCACACCTATGGGGCTCCCACAGTGAGGTATGTTGGCCAGGGTGAAG
ATCGTGAAGCGGTGGAACCTCAGCTAGATTATGAGGATTTTGGGGATTCT
CTGGGGGATCATGCCGACAATTCGGAAAGCGAGACGGATTCCATTTTGAG
TTTCTGCAAGGAACTGGATGAGGAGGAGGCCAACGATGCATTGCTAAATG
GCAGAATGAGCTTCACAGACGAGAAGGCGAAAGTTGAGGATAAAGCGAAT
GCAGATGATGTGTTTCACCGGGTCATGAACAAAGGCGATGAGGCGGCTGC
CACGGACACGGAGACCGTGATGAACTTTGATCACGATGTGCAGAGCCTTA
GCTCCTTAGGCAGCTGCACGCCAACGGTGACGCAACGCGGTGAGGATGTC
GACAATTTGGACAATATCAGCGGCAGGACATTTTTCAAGGAGGAAAAATC
GCACAGCATTAACACCAGGACCTTTTGCAAGGATAACAATCTGGATGCGC
TGAGCGGCAGGACCTTCTACAAGCAGGCCTCCGTAAAGGAGACTAACCAG
GGCCAGATTTCCAGTCGGACATACAGCCTGAGTAGCTCGGGCAACAATCA
AAACCATGACGCATCCTCGATGTCCACCTGCAGCTGGTCGGACATGTACC
GCGGTGCTCTGCAGTCCACCGATGGATGCACCGGTATGCCCCCTCTGAGC
CTGGCCAGCGTCGTCTCTGACTCGTCCACGTGCTACAAGCAGCTGGAGGA
G
BO07579.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18266-PA | 1461 | CG18266-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18266-RA | 1804 | CG18266-RA | 107..991 | 17..901 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5596939..5597823 | 17..901 | 4425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:07:56 has no hits.
BO07579.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:02 Download gff for
BO07579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:07:00 Download gff for
BO07579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:16 Download gff for
BO07579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 105..991 | 14..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:57 Download gff for
BO07579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 105..991 | 14..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:57 Download gff for
BO07579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5596937..5597823 | 14..901 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:16 Download gff for
BO07579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5596937..5597823 | 14..901 | 99 | | Plus |
BO07579.complete Sequence
1492 bp (1492 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630849
> BO07579.complete
GAAGTTATCAGTCGACATGGCCTTTGTAGCGCGTCGGAGTAGCGATGGCT
CGGTGGTGGATCGTCAGCAGGTGTCTGGTCGGGAAAAAGTACGTCCAGCT
TCCCAGTCGGACATTAGTGATGAGGATTCGGAGTCGCTGCTGGGCTATAC
AAACCACACCTATGGGGCTCCCACAGTGAGGTATGTTGGCCAGGGTGAAG
ATCGTGAAGCGGTGGAACCTCAGCTAGATTATGAGGATTTTGGGGATTCT
CTGGGGGATCATGCCGACAATTCGGAAAGCGAGACGGATTCCATTTTGAG
TTTCTGCAAGGAACTGGATGAGGAGGAGGCCAACGATGCATTGCTAAATG
GCAGAATGAGCTTCACAGACGAGAAGGCGAAAGTTGAGGATAAAGCGAAT
GCAGATGATGTGTTTCACCGGGTCATGAACAAAGGCGATGAGGCGGCTGC
CACGGACACGGAGACCGTGATGAACTTTGATCACGATGTGCAGAGCCTTA
GCTCCTTAGGCAGCTGCACGCCAACGGTGACGCAACGCGGTGAGGATGTC
GACAATTTGGACAATATCAGCGGCAGGACATTTTTCAAGGAGGAAAAATC
GCACAGCATTAACACCAGGACCTTTTGCAAGGATAACAATCTGGATGCGC
TGAGCGGCAGGACCTTCTACAAGCAGGCCTCCGTAAAGGAGACTAACCAG
GGCCAGATTTCCAGTCGGACATACAGCCTGAGTAGCTCGGGCAACAATCA
AAACCATGACGCATCCTCGATGTCCACCTGCAGCTGGTCGGACATGTACC
GCGGTGCTCTGCAGTCCACCGATGGATGCACCGGTATGCCCCCTCTGAGC
CTGGCCAGCGTCGTCTCTGACTCGTCCACGTGCTACAAGCAGCTGGAGGA
GCATAAGGAACGCCCTGGCCCGCAGGCCTTCGAGGACTGGAAGGCGCGAA
AGGCCGCCGAGAAGCAGAAGAATCTGCTGGCTGCCAAACAGGAGCGCGAA
AAGCGGGAGGCGGAGGCAGCACTGCGACAGAAATATGCCCAGGAGCACTT
CCAGGAGTGGTGTCGTCGCAAGGAGGAGCAGCAGCAGCAGCAGCGGCAAA
AGCAAAAGAAATCCTCGACCTCTAGCTCCAGTTTGGGATCGGTTTCCAGC
TCTAGCACCGCCCCTACAAGGAAGGTGTCTCCCGAGAACACAAAGAACCG
TCTGCAGAAGTGGGAGCAAGCCAAGCGGGAGCAGCAGCAACAGGAAAAAC
AACGCCTGATCCGACTGCAGTGCAACAAGCAGAAACTGGAGGAGGAACGC
CGTCAGCGCCGCCAAGGCGCCTGGCAGAACTGGATGAAACAGGTGGACAA
GCGGGCCAAGCCGGTTCCCCTCAATCAGGGCTTTGACACGCTGCGCGGTA
CCATATCCAACATCTACATCAATCCCGTGCAATGGGTGTCCAATATCGAT
CCGCAGGATTCGGGGCGCAGTCGTGCAAGCTTTCTAGACCAT
BO07579.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18266-RA | 1461 | CG18266-PA | 1..1458 | 17..1474 | 7290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18266-RA | 1804 | CG18266-RA | 107..1564 | 17..1474 | 7290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5596939..5598396 | 17..1474 | 7290 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:03:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1059..1171 | 1197..1315 | 157 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6859 | 1194..1315 | 143 | 59.8 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3295..3351 | 1230..1286 | 132 | 70.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2535 | 1077..1307 | 122 | 56.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6816..6925 | 1194..1309 | 114 | 60.3 | Plus |
BO07579.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:12 Download gff for
BO07579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 1..1461 | 17..1475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:53 Download gff for
BO07579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 105..1564 | 14..1474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:04 Download gff for
BO07579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 107..1564 | 17..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:12 Download gff for
BO07579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 105..1564 | 14..1474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:37 Download gff for
BO07579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 107..1564 | 17..1476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:37 Download gff for
BO07579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5596939..5598396 | 17..1476 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:04 Download gff for
BO07579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5596939..5598396 | 17..1476 | 99 | | Plus |
BO07579.pep Sequence
Translation from 16 to 1492
> BO07579.pep
MAFVARRSSDGSVVDRQQVSGREKVRPASQSDISDEDSESLLGYTNHTYG
APTVRYVGQGEDREAVEPQLDYEDFGDSLGDHADNSESETDSILSFCKEL
DEEEANDALLNGRMSFTDEKAKVEDKANADDVFHRVMNKGDEAAATDTET
VMNFDHDVQSLSSLGSCTPTVTQRGEDVDNLDNISGRTFFKEEKSHSINT
RTFCKDNNLDALSGRTFYKQASVKETNQGQISSRTYSLSSSGNNQNHDAS
SMSTCSWSDMYRGALQSTDGCTGMPPLSLASVVSDSSTCYKQLEEHKERP
GPQAFEDWKARKAAEKQKNLLAAKQEREKREAEAALRQKYAQEHFQEWCR
RKEEQQQQQRQKQKKSSTSSSSLGSVSSSSTAPTRKVSPENTKNRLQKWE
QAKREQQQQEKQRLIRLQCNKQKLEEERRQRRQGAWQNWMKQVDKRAKPV
PLNQGFDTLRGTISNIYINPVQWVSNIDPQDSGRSRASFLDH
BO07579.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18266-PA | 486 | CG18266-PA | 1..486 | 1..486 | 2523 | 100 | Plus |
CG14011-PC | 388 | CG14011-PC | 139..388 | 221..475 | 333 | 31.2 | Plus |
CG14011-PB | 388 | CG14011-PB | 139..388 | 221..475 | 333 | 31.2 | Plus |
CG14011-PA | 388 | CG14011-PA | 139..388 | 221..475 | 333 | 31.2 | Plus |
CG7251-PB | 321 | CG7251-PB | 47..316 | 230..477 | 311 | 31.7 | Plus |