Clone Sequence Records
BO07589.3prime Sequence
839 bp (811 high quality bases) assembled on 2006-01-06
> BO07589.3prime
ATGGTCTAGAAAGCTTGCGAGCTCGGTATGTTTTCCGCCCAGATACTCCT
CCTTGATCATGTCCGCCCCCTTCTCGGCGATCATAATGCATGCAGCATTG
GTGTTGGCACCCACAATGTCGGGCATAATGCTGGCATCGATCACCCTCAA
TCCCTTGGCACCATGAACCCTCAATTGGGGATCGACCACGGCAGTGGGAT
CAGTGGATGGTCCCATGCGAGTGGTTCCGACCGGATGGTAAACGGTGGTG
GTCATGTGACGGATATAGCAACGCCAGTAGTCATCCGACTGATAGGTCAG
ACCATTGCATGCCTCCAAATCCAGTTTGTGGAGTGCGGCCTCCCTCTCAC
TGAAGGCTTTGGTATTCGGCAAGTTCTTGTAGATGTTCAAGGCCCTAATA
TAGGTGTCTACATCGCGCTCATCGGTCATATAACCGGGATCGATGATCGG
AGCGTCCAAATAGTTCGCAGATTGCAAGGTCAAACTTCCCGCCGAGAATG
GCTTCAGATGCAGCAAATACGTAATGTAGGTATTGGTCTCCTGATTGGCC
GACAAAATGCTCTTGGCCACGCGATCATTGAATCCGGTTGCAGCCACATA
GCCCTTAAGTTCAGGACTCTGCATTAGGCTGAAGAAATTGGTGGTCTGGA
TGTCCGGATTGGGTCCCTCAATCGAGGTGGTGTTAATGAATCCCGTCAAG
GCGGTGGCCTCGTGGTGCAACAGTTTGCTATAACGACCCATCAGCAGATT
GTACATGGCATCCACTAGCTCCTCCTCGGTTGGTTTGCGAGCAGTTGACT
TGTCGATCTGGAAGATCATCGGCAGACTGGCGTGATCCT
BO07589.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9512-PA | 1872 | CG9512-RA | 1049..1869 | 839..19 | 4105 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:59:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9512-RB | 2221 | CG9512-RB | 1197..2017 | 839..19 | 4105 | 100 | Minus |
| CG9512-RA | 2113 | CG9512-RA | 1197..2017 | 839..19 | 4105 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:59:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14902048..14902868 | 19..839 | 4105 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 21:59:27 has no hits.
BO07589.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:20 Download gff for
BO07589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-PA | 1049..1872 | 15..839 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:07:25 Download gff for
BO07589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-PA | 1049..1872 | 15..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:00 Download gff for
BO07589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 1197..2026 | 6..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:57 Download gff for
BO07589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 1197..2026 | 6..839 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:57 Download gff for
BO07589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14902039..14902868 | 6..839 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:00 Download gff for
BO07589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14796072..14796901 | 6..839 | 99 | | Plus |
BO07589.5prime Sequence
841 bp (799 high quality bases) assembled on 2006-01-06
> BO07589.5prime
GAAGTTATCAGTCGACATGGAGTTCCTTAGCGCCCAGTGCGCTGCCCGTT
CGGCGGGTCCGGCAAATACGCTGATGTCCTTGCTCCTGTCCACGCTGATT
ACCAAGTACTGCGATTTGAGCGGACAAAATCAATGGCCAGAGGACAAGGG
CGATTGGCTGGAACAGGCTGGTGGCTTCAAGCATGACTACGACTTTATTG
TGATTGGATCGGGTACATCGGGCGCAGTGGTTGCTGGTCGTCTGGCCGAG
GTAAAGAACTGGAAAGTGCTGCTCCTGGAGGCCGGTGGTGATCCACCAAT
TGAGACGGAGTTCGTTGCCTGGCACATGGCCACCCAATTCTCCGAATGGG
ATTGGCAATACCACTCGAAACCGAACGGACGTGCGTGCATGGCGATGAAG
GGCGAAAGTTGCCACTGGCCGAGGGGCAAAATGTTGGGCGGCACGAATGG
AATGAATGCCATGATCTATGCCAGAGGAACGCGTAAGGATTTCGATGACT
GGGAAGAGAGGGGCAATCCCGGATGGGGCTACGATGAGGTGCTGAAACAC
TTCCGCAAGGCCGAGGATCTGCGTTCCACGCGACCGGACTACAAGCCCGG
CGATCATGGCGTCGGTGGACCAATGGGACTGAACAATTATGTATCCGACA
ACGAATTCCGCACTACCATACGCGCCGGCATGCAGGAGATGGGCTACGGC
AGTGCTCCGGACTTTACCGAAGGCTCGTTTGTGGGTCAAATGGACATCTT
GGGCACTCAGGATGGTGGTCGTCGTATCACCACCGCCCGATCTCATCTGA
AGAAGAAATACGCCCATCTGCACATCCTGCGACATGCTCAC
BO07589.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9512-PA | 1872 | CG9512-RA | 1..791 | 17..807 | 3955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9512-RB | 2221 | CG9512-RB | 149..973 | 17..841 | 4080 | 99.8 | Plus |
| CG9512-RA | 2113 | CG9512-RA | 149..973 | 17..841 | 4080 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14904112..14904936 | 841..17 | 4035 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:32:40 has no hits.
BO07589.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:21 Download gff for
BO07589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:07:27 Download gff for
BO07589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:04:11 Download gff for
BO07589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 142..973 | 9..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:46:05 Download gff for
BO07589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 142..973 | 9..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:46:05 Download gff for
BO07589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14904112..14904940 | 9..841 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:04:11 Download gff for
BO07589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14798145..14798973 | 9..841 | 99 | | Minus |
BO07589.complete Sequence
1903 bp (1903 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630850
> BO07589.complete
GAAGTTATCAGTCGACATGGAGTTCCTTAGCGCCCAGTGCGCTGCCCGTT
CGGCGGGTCCGGCAAATACGCTGATGTCCTTGCTCCTGTCCACGCTGATT
ACCAAGTACTGCGATTTGAGCGGACAAAATCAATGGCCAGAGGACAAGGG
CGATTGGCTGGAACAGGCTGGTGGCTTCAAGCATGACTACGACTTTATTG
TGATTGGATCGGGTACATCGGGCGCAGTGGTTGCTGGTCGTCTGGCCGAG
GTAAAGAACTGGAAAGTGCTGCTCCTGGAGGCCGGTGGTGATCCACCAAT
TGAGACGGAGTTCGTTGCCTGGCACATGGCCACCCAATTCTCCGAATGGG
ATTGGCAATACCACTCGAAACCGAACGGACGTGCGTGCATGGCGATGAAG
GGCGAAAGTTGCCACTGGCCGAGGGGCAAAATGTTGGGCGGCACGAATGG
AATGAATGCCATGATCTATGCCAGAGGAACGCGTAAGGATTTCGATGACT
GGGAAGAGAGGGGCAATCCCGGATGGGGCTACGATGAGGTGCTGAAACAC
TTCCGCAAGGCCGAGGATCTGCGTTCCACGCGACCGGACTACAAGCCCGG
CGATCATGGCGTCGGTGGACCAATGGGACTGAACAATTATGTATCCGACA
ACGAATTCCGCACTACCATACGCGCCGGCATGCAGGAGATGGGCTACGGC
AGTGCTCCGGACTTTACCGAAGGCTCGTTTGTGGGTCAAATGGACATCTT
GGGCACTCAGGATGGTGGTCGTCGTATCACCACCGCCCGATCTCATCTGA
AGAAGAATACGCCCAATCTGCACATCCTGCGACATGCTCACGTCAAGAAG
ATCAATCTGGATCGTAACAATCGAGCCGAAAGTGTGACCTTTGTGCATCG
CGGCAAGAAGGAGTACACGGTGAAGGCCAGTAAGGAGGTCATCGTGTCCG
CCGGTGCCATTGGTTCACCTCAGATCCTGTTGCTTTCAGGCATCGGTCCC
GCCGATCACTTGAAGAGCCTGGGAATTCCCGTGAAACTGGACCTTCCCGT
GGGTGAGAACCTCAAGGATCACGCCAGTCTGCCGATGATCTTCCAGATCG
ACAAGTCAACTGCTCGCAAACCAACCGAGGAGGAGCTAGTGGATGCCATG
TACAATCTGCTGATGGGTCGTTATAGCAAACTGTTGCACCACGAGGCCAC
CGCCTTGACGGGATTCATTAACACCACCTCGATTGAGGGACCCAATCCGG
ACATCCAGACCACCAATTTCTTCAGCCTAATGCAGAGTCCTGAACTTAAG
GGCTATGTGGCTGCAACCGGATTCAATGATCGCGTGGCCAAGAGCATTTT
GTCGGCCAATCAGGAGACCAATACCTACATTACGTATTTGCTGCATCTGA
AGCCATTCTCGGCGGGAAGTTTGACCTTGCAATCTGCGAACTATTTGGAC
GCTCCGATCATCGATCCCGGTTATATGACCGATGAGCGCGATGTAGACAC
CTATATTAGGGCCTTGAACATCTACAAGAACTTGCCGAATACCAAAGCCT
TCAGTGAGAGGGAGGCCGCACTCCACAAACTGGATTTGGAGGCATGCAAT
GGTCTGACCTATCAGTCGGATGACTACTGGCGTTGCTATATCCGTCACAT
GACCACCACCGTTTACCATCCGGTCGGAACCACTCGCATGGGACCATCCA
CTGATCCCACTGCCGTGGTCGATCCCCAATTGAGGGTTCATGGTGCCAAG
GGATTGAGGGTGATCGATGCCAGCATTATGCCCGACATTGTGGGTGCCAA
CACCAATGCTGCATGCATTATGATCGCCGAGAAGGGGGCGGACATGATCA
AGGAGGAGTATCTGGGCGGAAAACATACCGAGCTCGCAAGCTTTCTAGAC
CAT
BO07589.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9512-RB | 1872 | CG9512-PB | 1..1869 | 17..1885 | 9345 | 100 | Plus |
| CG9512-RA | 1872 | CG9512-PA | 1..1869 | 17..1885 | 9345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9512-RB | 2221 | CG9512-RB | 149..2017 | 17..1885 | 9345 | 100 | Plus |
| CG9512-RA | 2113 | CG9512-RA | 149..2017 | 17..1885 | 9345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14903963..14904936 | 990..17 | 4870 | 100 | Minus |
| X | 23542271 | X | 14902048..14902947 | 1885..986 | 4500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:38:19 has no hits.
BO07589.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:52 Download gff for
BO07589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 1..1872 | 17..1889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:52 Download gff for
BO07589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 134..2018 | 9..1898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:34 Download gff for
BO07589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 149..2017 | 17..1887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:52 Download gff for
BO07589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 118..2002 | 9..1898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:20 Download gff for
BO07589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 149..2017 | 17..1887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:20 Download gff for
BO07589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14902046..14902943 | 990..1887 | 99 | <- | Minus |
| X | 14903964..14904936 | 17..989 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:34 Download gff for
BO07589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14796079..14796976 | 990..1887 | 99 | <- | Minus |
| arm_X | 14797997..14798969 | 17..989 | 100 | | Minus |
BO07589.pep Sequence
Translation from 16 to 1903
> BO07589.pep
MEFLSAQCAARSAGPANTLMSLLLSTLITKYCDLSGQNQWPEDKGDWLEQ
AGGFKHDYDFIVIGSGTSGAVVAGRLAEVKNWKVLLLEAGGDPPIETEFV
AWHMATQFSEWDWQYHSKPNGRACMAMKGESCHWPRGKMLGGTNGMNAMI
YARGTRKDFDDWEERGNPGWGYDEVLKHFRKAEDLRSTRPDYKPGDHGVG
GPMGLNNYVSDNEFRTTIRAGMQEMGYGSAPDFTEGSFVGQMDILGTQDG
GRRITTARSHLKKNTPNLHILRHAHVKKINLDRNNRAESVTFVHRGKKEY
TVKASKEVIVSAGAIGSPQILLLSGIGPADHLKSLGIPVKLDLPVGENLK
DHASLPMIFQIDKSTARKPTEEELVDAMYNLLMGRYSKLLHHEATALTGF
INTTSIEGPNPDIQTTNFFSLMQSPELKGYVAATGFNDRVAKSILSANQE
TNTYITYLLHLKPFSAGSLTLQSANYLDAPIIDPGYMTDERDVDTYIRAL
NIYKNLPNTKAFSEREAALHKLDLEACNGLTYQSDDYWRCYIRHMTTTVY
HPVGTTRMGPSTDPTAVVDPQLRVHGAKGLRVIDASIMPDIVGANTNAAC
IMIAEKGADMIKEEYLGGKHTELASFLDH
BO07589.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9512-PB | 623 | CG9512-PB | 1..623 | 1..623 | 3312 | 100 | Plus |
| CG9512-PA | 623 | CG9512-PA | 1..623 | 1..623 | 3312 | 100 | Plus |
| CG9509-PB | 646 | CG9509-PB | 36..627 | 19..617 | 1144 | 39.2 | Plus |
| CG9509-PA | 646 | CG9509-PA | 36..627 | 19..617 | 1144 | 39.2 | Plus |
| CG45065-PA | 613 | CG45065-PA | 30..604 | 41..615 | 972 | 37.9 | Plus |
