Clone Sequence Records
BO07601.3prime Sequence
942 bp (864 high quality bases) assembled on 2006-01-06
> BO07601.3prime
ATGGTCTAGAAAGCTTGCCGCTCCGTCAAAGGCCTCCCGTTCGCCCTGTG
GAAGCGTCGAAGTCTCCCAGTTCAGTGAACGATCGATAGCCATTTTCCAC
TTTTGGTAGCGCAGGTTGCGATCGGTGGCACTGATCGATGGCTTTATGGC
TTCTCGGGGGCCAGATTTAGAGAGTGGAGCCTCCATTTGGTATCGGTTTT
CAACGGCTTTGTAGGCTGCCATTGCAGCTCCCAGCGCTGTTGTCTCTGCG
ATCTTCGCCCGGAGTACTTGAATTCCTACTAGGTCGGATTGAAGCTGCAG
GAACAGATTATTCACAGTCATGCCCCCGTCTACCATAAGCTTGGCCAGTG
GAATCTTGCAGTCCTTGTGCATCGAATCGAGAATATCACGGACCTGGAAA
CAAACTGCTTCCAGGGTGGCTCTTACTATGTGCTCACTTGTTGTTTCTTC
ACTCAGTCCACAAATGACACCGCGAGCGTCCTGATTCCAGTAGGGGGCGT
AGAGTCCATTGAAAGCTGGTACGAAGTATACGTCAAGAGAGTTGTCCACA
GTGCTAGCCATGGTTTCGATCTGCCCCGAGTTTTGAATAAGGTTCATGTT
GTCGCGCAGCCAGTTGAATGCTGCACCGGCAATGGACACGCTTCCCTCAA
GGGCGTAAAATGGGACTGCCTTCCGTCCTAGTTGGTAGCCAACAGTCGTT
AGTAATCCGTGCGTTGAGTGTACAATTGAAGGTCCTGTGTTATAAAGCAG
AAAACATCCAGTGCCATAAGTGGCTTTGGCCTGACCTTTGGCCAGGCATT
GTTGACCCACTAGAGCGGCTTGCTGGTCGCCCAGAACCGATGTTATGCCT
ATGCCTTGCAGAACGCCCTGCGCAATGCTGCCATAGAACTCTGAGCTCGA
GCAGATCTCCGGCAAAATGGTCTTGGGCAGCCCAAGAACTTT
BO07601.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18374-PA | 1617 | Gyk-RA | 698..1614 | 935..19 | 4585 | 100 | Minus |
| CG18374-PB | 1425 | Gyk-RB | 506..1422 | 935..19 | 4585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gyk-RB | 1713 | CG18374-RB | 670..1594 | 942..19 | 4600 | 99.9 | Minus |
| Gyk-RA | 1933 | CG18374-RA | 897..1821 | 942..19 | 4600 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 202488..203192 | 231..935 | 3525 | 100 | Plus |
| 3L | 28110227 | 3L | 202217..202430 | 19..232 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:13:31 has no hits.
BO07601.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:34 Download gff for
BO07601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyk-PB | 498..1425 | 16..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:07:46 Download gff for
BO07601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18374-PB | 498..1425 | 16..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:07:05 Download gff for
BO07601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyk-RA | 897..1832 | 12..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:42:33 Download gff for
BO07601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyk-RA | 897..1832 | 12..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:42:33 Download gff for
BO07601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 202206..202429 | 12..231 | 98 | <- | Plus |
| 3L | 202489..203200 | 232..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:07:05 Download gff for
BO07601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 202206..202429 | 12..231 | 98 | <- | Plus |
| arm_3L | 202489..203200 | 232..942 | 99 | | Plus |
BO07601.5prime Sequence
954 bp (854 high quality bases) assembled on 2006-01-06
> BO07601.5prime
GAAGTTATCAGTCGACATGGATTCTCCCACAACCGAAACGACACCGCCTC
CACCCACGCTATCTGGTCCATTCGTTGGGGCTATTGACGAGGGAACCACT
TCCGCGCGATTTATTATATTTCGTGCGGGCACTGACGAAATTGTGTGCTT
TCATCAGATTGAAGTGGAGTCTATTTTCCAGAAGGAGGGATGGTGCGAGC
AGGATCCCATGGCCATAGTGAATACGGTCAACGAGTGCATCACCGGTGCC
TGCAAGAAACTTGTGGCCGTGGGCGGGAAGGTTGAGGAAATAATCACGAT
TGGAATAACAAACCAACGCGAGTCCACAGTCGTATGGGATAGAAACTCCG
GCCAACCGCTGGTGAACGCTATCATCTGGCTAGACAATCGTACCACCAGC
ACGGTGGAGGAGCTTTTGGAGACTATTCCGAACAATGCCAGGAACATCAA
CTACCTGCGCCCATTGTGCGGACTTCCTCTGTCTCCGTACTTTTCGGGCG
TGAAACTACGCTGGCTTCGAGACAACGTGCCGGTTGTCAGCCAGGCTATG
GAGAAGGGCACGGCCATGTTTGGCACCATCGACACCTGGCTAATGTATAA
TCTTACGGGCGGGAAGGACTGTGGTGTCCACAAGACGGATGTGACCAACG
CTTCGCGCACTATGCTCATGAACATCGAGACCCTTCAGTGGGATGCCAAC
TTGCTAAAGTTCTTTGGGCTGCCCAAGACCATTTTGCCGGAGATCTGCTC
GAGCTCAGAGTTCTATGGCAGCATTGCGCAGGGCGTTCTGCAAGGCATAG
GCATAACATCGGTTCTGGGCGACCAGCAAGCCGCTCTAGTGGGTCAACAA
TGCCTGGGCAAAGGTCAGGCCAAAGCCACTTATGGCACTGGATGTTTTCT
GCTTTATAACACAGGAACTTCAATTGTACACTCAACGCACGGATTACTAA
CGAC
BO07601.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18374-PA | 1617 | Gyk-RA | 1..938 | 17..954 | 4640 | 99.7 | Plus |
| CG18374-PB | 1425 | Gyk-RB | 1..746 | 209..954 | 3680 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gyk-RA | 1933 | CG18374-RA | 208..1145 | 17..954 | 4660 | 99.8 | Plus |
| Gyk-RB | 1713 | CG18374-RB | 144..918 | 180..954 | 3845 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 202952..203621 | 954..285 | 3320 | 99.7 | Minus |
| 3L | 28110227 | 3L | 205367..205637 | 287..17 | 1355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:46:06 has no hits.
BO07601.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:35 Download gff for
BO07601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyk-PA | 1..938 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:07:48 Download gff for
BO07601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18374-PA | 1..938 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:07:35 Download gff for
BO07601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyk-RA | 208..1145 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:25 Download gff for
BO07601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyk-RA | 208..1145 | 17..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:25 Download gff for
BO07601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 202952..203619 | 287..954 | 99 | <- | Minus |
| 3L | 205368..205637 | 17..286 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:07:35 Download gff for
BO07601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 202952..203619 | 287..954 | 99 | <- | Minus |
| arm_3L | 205368..205637 | 17..286 | 100 | | Minus |
BO07601.complete Sequence
1648 bp (1648 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630853
> BO07601.complete
GAAGTTATCAGTCGACATGGATTCTCCCACAACCGAAACGACACCGCCTC
CACCCACGCTATCTGGTCCATTCGTTGGGGCTATTGACGAGGGAACCACT
TCCGCGCGATTTATTATATTTCGTGCGGGCACTGACGAAATTGTGTGCTT
TCATCAGATTGAAGTGGAGTCTATTTTCCAGAAGGAGGGATGGTGCGAGC
AGGATCCCATGGCCATAGTGAATACGGTCAACGAGTGCATCACCGGTGCC
TGCAAGAAACTTGTGGCCGTGGGCGGGAAGGTTGAGGAAATAATCACGAT
TGGAATAACAAACCAACGCGAGTCCACAGTCGTATGGGATAGAAACTCCG
GCCAACCGCTGGTGAACGCTATCATCTGGCTAGACAATCGTACCACCAGC
ACGGTGGAGGAGCTTTTGGAGACTATTCCGAACAATGCCAGGAACATCAA
CTACCTGCGCCCATTGTGCGGACTTCCTCTGTCTCCGTACTTTTCGGGCG
TGAAACTACGCTGGCTTCGAGACAACGTGCCGGTTGTCAGCCAGGCTATG
GAGAAGGGCACGGCCATGTTTGGCACCATCGACACCTGGCTAATGTATAA
TCTTACGGGCGGGAAGGACTGTGGTGTCCACAAGACGGATGTGACCAACG
CTTCGCGCACTATGCTCATGAACATCGAGACCCTTCAGTGGGATGCCAAC
TTGCTAAAGTTCTTTGGGCTGCCCAAGACCATTTTGCCGGAGATCTGCTC
GAGCTCAGAGTTCTATGGCAGCATTGCGCAGGGCGTTCTGCAAGGCATAG
GCATAACATCGGTTCTGGGCGACCAGCAAGCCGCTCTAGTGGGTCAACAA
TGCCTGGCCAAAGGTCAGGCCAAAGCCACTTATGGCACTGGATGTTTTCT
GCTTTATAACACAGGACCTTCAATTGTACACTCAACGCACGGATTACTAA
CGACTGTTGGCTACCAACTAGGACGGAAGGCAGTCCCATTTTACGCCCTT
GAGGGAAGCGTGTCCATTGCCGGTGCAGCATTCAACTGGCTGCGCGACAA
CATGAACCTTATTCAAAACTCGGGGCAGATCGAAACCATGGCTAGCACTG
TGGACAACTCTCTTGACGTATACTTCGTACCAGCTTTCAATGGACTCTAC
GCCCCCTACTGGAATCAGGACGCTCGCGGTGTCATTTGTGGACTGAGTGA
AGAAACAACAAGTGAGCACATAGTAAGAGCCACCCTGGAAGCAGTTTGTT
TCCAGGTCCGTGATATTCTCGATTCGATGCACAAGGACTGCAAGATTCCA
CTGGCCAAGCTTATGGTAGACGGGGGCATGACTGTGAATAATCTGTTCCT
GCAGCTTCAATCCGACCTAGTAGGAATTCAAGTACTCCGGGCGAAGATCG
CAGAGACAACAGCGCTGGGAGCTGCAATGGCAGCCTACAAAGCCGTTGAA
AACCGATACCAAATGGAGGCTCCACTCTCTAAATCTGGCCCCCGAGAAGC
CATAAAGCCATCGATCAGTGCCACCGATCGCAACCTGCGCTACCAAAAGT
GGAAAATGGCTATCGATCGTTCACTGAACTGGGAGACTTCGACGCTTCCA
CAGGGCGAACGGGAGGCCTTTGACGGAGCGGCAAGCTTTCTAGACCAT
BO07601.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gyk-RA | 1617 | CG18374-PA | 1..1614 | 17..1630 | 8070 | 100 | Plus |
| Gyk-RB | 1425 | CG18374-PB | 1..1422 | 209..1630 | 7110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gyk-RA | 1933 | CG18374-RA | 208..1821 | 17..1630 | 8070 | 100 | Plus |
| Gyk-RB | 1713 | CG18374-RB | 144..1594 | 180..1630 | 7255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 202488..203621 | 1418..285 | 5670 | 100 | Minus |
| 3L | 28110227 | 3L | 205367..205637 | 287..17 | 1355 | 100 | Minus |
| 3L | 28110227 | 3L | 202217..202430 | 1630..1417 | 1070 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:12:32 has no hits.
BO07601.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:37 Download gff for
BO07601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyk-RA | 1..1617 | 17..1633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:26 Download gff for
BO07601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyk-RA | 183..1807 | 17..1637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:31 Download gff for
BO07601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyk-RA | 208..1821 | 17..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:38 Download gff for
BO07601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyk-RA | 183..1807 | 17..1637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:25 Download gff for
BO07601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyk-RA | 208..1821 | 17..1632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:25 Download gff for
BO07601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 202214..202429 | 1418..1632 | 99 | <- | Minus |
| 3L | 202489..203619 | 287..1417 | 100 | <- | Minus |
| 3L | 205368..205637 | 17..286 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:31 Download gff for
BO07601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 202214..202429 | 1418..1632 | 99 | <- | Minus |
| arm_3L | 202489..203619 | 287..1417 | 100 | <- | Minus |
| arm_3L | 205368..205637 | 17..286 | 100 | | Minus |
BO07601.pep Sequence
Translation from 16 to 1648
> BO07601.pep
MDSPTTETTPPPPTLSGPFVGAIDEGTTSARFIIFRAGTDEIVCFHQIEV
ESIFQKEGWCEQDPMAIVNTVNECITGACKKLVAVGGKVEEIITIGITNQ
RESTVVWDRNSGQPLVNAIIWLDNRTTSTVEELLETIPNNARNINYLRPL
CGLPLSPYFSGVKLRWLRDNVPVVSQAMEKGTAMFGTIDTWLMYNLTGGK
DCGVHKTDVTNASRTMLMNIETLQWDANLLKFFGLPKTILPEICSSSEFY
GSIAQGVLQGIGITSVLGDQQAALVGQQCLAKGQAKATYGTGCFLLYNTG
PSIVHSTHGLLTTVGYQLGRKAVPFYALEGSVSIAGAAFNWLRDNMNLIQ
NSGQIETMASTVDNSLDVYFVPAFNGLYAPYWNQDARGVICGLSEETTSE
HIVRATLEAVCFQVRDILDSMHKDCKIPLAKLMVDGGMTVNNLFLQLQSD
LVGIQVLRAKIAETTALGAAMAAYKAVENRYQMEAPLSKSGPREAIKPSI
SATDRNLRYQKWKMAIDRSLNWETSTLPQGEREAFDGAASFLDH
BO07601.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gyk-PA | 538 | CG18374-PA | 1..538 | 1..538 | 2807 | 100 | Plus |
| Gyk-PB | 474 | CG18374-PB | 1..474 | 65..538 | 2459 | 100 | Plus |
| Gk-PF | 576 | CG7995-PF | 33..533 | 20..522 | 1212 | 46.3 | Plus |
| Gk-PA | 576 | CG7995-PA | 33..533 | 20..522 | 1212 | 46.3 | Plus |
| Gk-PB | 576 | CG7995-PB | 33..533 | 20..522 | 1212 | 46.3 | Plus |
