Clone Sequence Records
BO07603.3prime Sequence
936 bp (861 high quality bases) assembled on 2006-01-06
> BO07603.3prime
ATGGTCTAGAAAGCTTGCTAAAGCGGCGCGTGGACGAACCATCATGCGAA
CTATTTTCAGGGAACCTTTGGGTCCATTTAAGAAACCGCGCCATAGAATG
CCCTTGAAACCATCAACATCCCGTTCTAGAAGGCGTTGATATAGGCCAAA
TGGGTTGGTGAGATTGCAAGAGCCGCCATACCAAAAAGCTCCCGACTGCT
GAGCCGCGCAGTTTTGCTCATTTTCATCATTAACCCTATCGTGGGTACTG
AATTTCTTTCCCGTGTGGTCACGCAATGCATCGGCAGCATCGCCGTGATA
ATCCCCCAAGACATTCAGACGATACTGTTCCGATTCACTGCCGATGCTAA
AGTGATCATATAGGGCATATCTCAGCTCCTGCTTTCGATTCTGCAGCTGA
ACCAAAAGCTCATAGTTGTCACTGCTCGTAATCTGATGCAATTTATCCAA
TCCGATGAAGAACTCGGTGGTTAGTGGCCCGAAACCGATCTTGTAATCCG
CCCACTTTCGATTGAAATCCTCACTGCCATCATAACGATTAACTACCATT
GTCCAACCACCGTTTCTGACCTTCTGATCGCAAAAAACAAAGAACGGTTC
CACGTTCGAGCGGGGTCTGATTCGCACCACACCGTGCTGCTGTTTCAGGC
AGTTTGCCGGAGTGATTGGAACGGCCGCTGCACCACCGTTGGCCAGGAGT
TGCGGCTCAATGTCTAGGAATCGAGATGCCAGTGCATTGGGCGAAGCGAG
TCCCACCACCGGTGCACTTCCCGCTCTTCGCAGATCCACCAACTGCTCCT
GGAGACTGCCTATCTGCTCCTTGACACTAGCTATTTCGTTGTTCAGCGAT
TGCATTCGAGTGGTAAGACCACTTTAAAGCGAAACTGGACAGCTGCTGGA
ACTCGCATTTCCCAAGGAGGGCGGAACCAACAGTCC
BO07603.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1889-PA | 999 | CG1889-RA | 79..996 | 936..19 | 4515 | 99.6 | Minus |
CG1889-PB | 726 | CG1889-RB | 24..723 | 718..19 | 3500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:39:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1889-RC | 1223 | CG1889-RC | 188..1105 | 936..19 | 4545 | 99.8 | Minus |
CG1889-RA | 1468 | CG1889-RA | 188..1105 | 936..19 | 4545 | 99.8 | Minus |
CG1889-RE | 1227 | CG1889-RE | 188..1109 | 936..19 | 4495 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9965837..9966397 | 718..158 | 2805 | 100 | Minus |
X | 23542271 | X | 9965585..9965770 | 904..719 | 885 | 98.4 | Minus |
X | 23542271 | X | 9966458..9966596 | 157..19 | 695 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 19:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\Mar | 610 | Dwil\Mar MAR 610bp Derived from AF518731. | 139..189 | 548..598 | 111 | 68.6 | Plus |
BO07603.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:38 Download gff for
BO07603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-PA | 79..999 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:07:51 Download gff for
BO07603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-PA | 79..999 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:09:54 Download gff for
BO07603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RA | 188..1108 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:49 Download gff for
BO07603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RA | 188..1108 | 15..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:49 Download gff for
BO07603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9965428..9965460 | 904..936 | 100 | -> | Minus |
X | 9965586..9965770 | 719..903 | 98 | -> | Minus |
X | 9965837..9966397 | 158..718 | 100 | -> | Minus |
X | 9966458..9966599 | 15..157 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:09:54 Download gff for
BO07603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9859461..9859493 | 904..936 | 100 | -> | Minus |
arm_X | 9859619..9859803 | 719..903 | 98 | -> | Minus |
arm_X | 9859870..9860430 | 158..718 | 100 | -> | Minus |
arm_X | 9860491..9860632 | 15..157 | 98 | | Minus |
BO07603.5prime Sequence
813 bp (812 high quality bases) assembled on 2006-01-06
> BO07603.5prime
GAAGTTATCAGTCGACATGTCACAGATGCTGCAGCTGGATGCCTTGGTCA
TGGCCATGGCCTGTCTATCCACCACACAAACGGATCTGGGCGGAGGACTG
TTGGTTCCGCCCTCCTTGGGAAATGCGAGTTCCAGCAGCTGTCCAGTTTC
GGCTTTAAGTGGTCTTACCACTCGAATGCAATCGCTGAACAACGAAATAG
CTAGTGTCAAGGAGCAGATAGGCAGTCTCCAGGAGCAGTTGGTGGATCTG
CGAAGAGCGGGAAGTGCACCGGTGGTGGGACTCGCTTCGCCCAATGCACT
GGCATCTCGATTCCTAGACATTGAGCCGCAACTCCTGGCCAACGGTGGTG
CAGCGGCCGTTCCAATCACTCCGGCAAACTGCCTGAAACAGCAGCACGGT
GTGGTGCGAATCAGACCCCGCTCGAACGTGGAACCGTTCTTTGTTTTTTG
CGATCAGAAGGTCAGAAACGGTGGTTGGACAATGGTAGTTAATCGTTATG
ATGGCAGTGAGGATTTCAATCGAAAGTGGGCGGATTACAAGATCGGTTTC
GGGCCACTAACCACCGAGTTCTTCATCGGATTGGATAAATTGCATCAGAT
TACGAGCAGTGACAACTATGAGCTTTTGGTTCAGCTGCAGAATCGAAAGC
AGGAGCTGAGATATGCCCTATATGATCACTTTAGCATCGGCAGTGAATCG
GAACAGTATCGTCTGAATGTCTTGGGGGATTATCACGGCGATGCTGCCGA
TGCATTGCGTGACCACACGGGAAAGAAATTCAGTACCCACGATAGGGTTA
ATGATGAAAATGA
BO07603.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1889-PA | 999 | CG1889-RA | 1..797 | 17..813 | 3985 | 100 | Plus |
CG1889-PB | 726 | CG1889-RB | 24..524 | 313..813 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1889-RC | 1223 | CG1889-RC | 110..906 | 17..813 | 3985 | 100 | Plus |
CG1889-RA | 1468 | CG1889-RA | 110..906 | 17..813 | 3985 | 100 | Plus |
CG1889-RE | 1227 | CG1889-RE | 110..910 | 17..813 | 3935 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9965837..9966337 | 313..813 | 2505 | 100 | Plus |
X | 23542271 | X | 9965585..9965770 | 127..312 | 930 | 100 | Plus |
X | 23542271 | X | 9965350..9965460 | 17..127 | 555 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 00:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\Mar | 610 | Dwil\Mar MAR 610bp Derived from AF518731. | 139..189 | 483..433 | 111 | 68.6 | Minus |
BO07603.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:39 Download gff for
BO07603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:07:53 Download gff for
BO07603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:20 Download gff for
BO07603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RA | 110..905 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:05 Download gff for
BO07603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RA | 110..905 | 17..812 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:05 Download gff for
BO07603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9965350..9965460 | 17..127 | 100 | -> | Plus |
X | 9965586..9965770 | 128..312 | 100 | -> | Plus |
X | 9965837..9966336 | 313..812 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:20 Download gff for
BO07603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9859383..9859493 | 17..127 | 100 | -> | Plus |
arm_X | 9859619..9859803 | 128..312 | 100 | -> | Plus |
arm_X | 9859870..9860369 | 313..812 | 100 | | Plus |
BO07603.complete Sequence
1030 bp (1030 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630854
> BO07603.complete
GAAGTTATCAGTCGACATGTCACAGATGCTGCAGCTGGATGCCTTGGTCA
TGGCCATGGCCTGTCTATCCACCACACAAACGGATCTGGGCGGAGGACTG
TTGGTTCCGCCCTCCTTGGGAAATGCGAGTTCCAGCAGCTGTCCAGTTTC
GGCTTTAAGTGGTCTTACCACTCGAATGCAATCGCTGAACAACGAAATAG
CTAGTGTCAAGGAGCAGATAGGCAGTCTCCAGGAGCAGTTGGTGGATCTG
CGAAGAGCGGGAAGTGCACCGGTGGTGGGACTCGCTTCGCCCAATGCACT
GGCATCTCGATTCCTAGACATTGAGCCGCAACTCCTGGCCAACGGTGGTG
CAGCGGCCGTTCCAATCACTCCGGCAAACTGCCTGAAACAGCAGCACGGT
GTGGTGCGAATCAGACCCCGCTCGAACGTGGAACCGTTCTTTGTTTTTTG
CGATCAGAAGGTCAGAAACGGTGGTTGGACAATGGTAGTTAATCGTTATG
ATGGCAGTGAGGATTTCAATCGAAAGTGGGCGGATTACAAGATCGGTTTC
GGGCCACTAACCACCGAGTTCTTCATCGGATTGGATAAATTGCATCAGAT
TACGAGCAGTGACAACTATGAGCTTTTGGTTCAGCTGCAGAATCGAAAGC
AGGAGCTGAGATATGCCCTATATGATCACTTTAGCATCGGCAGTGAATCG
GAACAGTATCGTCTGAATGTCTTGGGGGATTATCACGGCGATGCTGCCGA
TGCATTGCGTGACCACACGGGAAAGAAATTCAGTACCCACGATAGGGTTA
ATGATGAAAATGAGCAAAACTGCGCGGCTCAGCAGTCGGGAGCTTTTTGG
TATGGCGGCTCTTGCAATCTCACCAACCCATTTGGCCTATATCAACGCCT
TCTAGAACGGGATGTTGATGGTTTCAAGGGCATTCTATGGCGCGGTTTCT
TAAATGGACCCAAAGGTTCCCTGAAAATAGTTCGCATGATGGTTCGTCCA
CGCGCCGCTTTAGCAAGCTTTCTAGACCAT
BO07603.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1889-RC | 999 | CG1889-PC | 1..996 | 17..1012 | 4980 | 100 | Plus |
CG1889-RA | 999 | CG1889-PA | 1..996 | 17..1012 | 4980 | 100 | Plus |
CG1889-RD | 1017 | CG1889-PD | 1..1014 | 17..1012 | 4765 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:57:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1889-RC | 1223 | CG1889-RC | 110..1105 | 17..1012 | 4980 | 100 | Plus |
CG1889-RA | 1468 | CG1889-RA | 110..1105 | 17..1012 | 4980 | 100 | Plus |
CG1889-RE | 1227 | CG1889-RE | 110..1109 | 17..1012 | 4905 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9965837..9966397 | 313..873 | 2805 | 100 | Plus |
X | 23542271 | X | 9965585..9965770 | 127..312 | 930 | 100 | Plus |
X | 23542271 | X | 9966458..9966596 | 874..1012 | 695 | 100 | Plus |
X | 23542271 | X | 9965350..9965460 | 17..127 | 555 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\Mar | 610 | Dwil\Mar MAR 610bp Derived from AF518731. | 139..189 | 483..433 | 111 | 68.6 | Minus |
BO07603.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:39 Download gff for
BO07603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RC | 1..999 | 17..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:28 Download gff for
BO07603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RC | 110..1108 | 17..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:28 Download gff for
BO07603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RA | 110..1105 | 17..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:39 Download gff for
BO07603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RC | 110..1108 | 17..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:45 Download gff for
BO07603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RA | 110..1105 | 17..1014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:45 Download gff for
BO07603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9965350..9965460 | 17..127 | 100 | -> | Plus |
X | 9965586..9965770 | 128..312 | 100 | -> | Plus |
X | 9965837..9966397 | 313..873 | 100 | -> | Plus |
X | 9966458..9966596 | 874..1014 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:28 Download gff for
BO07603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9859383..9859493 | 17..127 | 100 | -> | Plus |
arm_X | 9859619..9859803 | 128..312 | 100 | -> | Plus |
arm_X | 9859870..9860430 | 313..873 | 100 | -> | Plus |
arm_X | 9860491..9860629 | 874..1014 | 98 | | Plus |
BO07603.pep Sequence
Translation from 16 to 1030
> BO07603.pep
MSQMLQLDALVMAMACLSTTQTDLGGGLLVPPSLGNASSSSCPVSALSGL
TTRMQSLNNEIASVKEQIGSLQEQLVDLRRAGSAPVVGLASPNALASRFL
DIEPQLLANGGAAAVPITPANCLKQQHGVVRIRPRSNVEPFFVFCDQKVR
NGGWTMVVNRYDGSEDFNRKWADYKIGFGPLTTEFFIGLDKLHQITSSDN
YELLVQLQNRKQELRYALYDHFSIGSESEQYRLNVLGDYHGDAADALRDH
TGKKFSTHDRVNDENEQNCAAQQSGAFWYGGSCNLTNPFGLYQRLLERDV
DGFKGILWRGFLNGPKGSLKIVRMMVRPRAALASFLDH
BO07603.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1889-PC | 332 | CG1889-PC | 1..332 | 1..332 | 1731 | 100 | Plus |
CG1889-PA | 332 | CG1889-PA | 1..332 | 1..332 | 1731 | 100 | Plus |
CG1889-PD | 338 | CG1889-PD | 1..338 | 1..332 | 1714 | 98.2 | Plus |
CG1791-PC | 333 | CG1791-PC | 1..329 | 5..328 | 779 | 47.2 | Plus |
CG1791-PA | 334 | CG1791-PA | 1..330 | 5..328 | 773 | 47.2 | Plus |