Clone BO07603 Report

Search the DGRC for BO07603

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:76
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG1889-RA
Protein status:BO07603.pep: validated full length
Sequenced Size:1030

Clone Sequence Records

BO07603.3prime Sequence

936 bp (861 high quality bases) assembled on 2006-01-06

> BO07603.3prime
ATGGTCTAGAAAGCTTGCTAAAGCGGCGCGTGGACGAACCATCATGCGAA
CTATTTTCAGGGAACCTTTGGGTCCATTTAAGAAACCGCGCCATAGAATG
CCCTTGAAACCATCAACATCCCGTTCTAGAAGGCGTTGATATAGGCCAAA
TGGGTTGGTGAGATTGCAAGAGCCGCCATACCAAAAAGCTCCCGACTGCT
GAGCCGCGCAGTTTTGCTCATTTTCATCATTAACCCTATCGTGGGTACTG
AATTTCTTTCCCGTGTGGTCACGCAATGCATCGGCAGCATCGCCGTGATA
ATCCCCCAAGACATTCAGACGATACTGTTCCGATTCACTGCCGATGCTAA
AGTGATCATATAGGGCATATCTCAGCTCCTGCTTTCGATTCTGCAGCTGA
ACCAAAAGCTCATAGTTGTCACTGCTCGTAATCTGATGCAATTTATCCAA
TCCGATGAAGAACTCGGTGGTTAGTGGCCCGAAACCGATCTTGTAATCCG
CCCACTTTCGATTGAAATCCTCACTGCCATCATAACGATTAACTACCATT
GTCCAACCACCGTTTCTGACCTTCTGATCGCAAAAAACAAAGAACGGTTC
CACGTTCGAGCGGGGTCTGATTCGCACCACACCGTGCTGCTGTTTCAGGC
AGTTTGCCGGAGTGATTGGAACGGCCGCTGCACCACCGTTGGCCAGGAGT
TGCGGCTCAATGTCTAGGAATCGAGATGCCAGTGCATTGGGCGAAGCGAG
TCCCACCACCGGTGCACTTCCCGCTCTTCGCAGATCCACCAACTGCTCCT
GGAGACTGCCTATCTGCTCCTTGACACTAGCTATTTCGTTGTTCAGCGAT
TGCATTCGAGTGGTAAGACCACTTTAAAGCGAAACTGGACAGCTGCTGGA
ACTCGCATTTCCCAAGGAGGGCGGAACCAACAGTCC

BO07603.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1889-PA 999 CG1889-RA 79..996 936..19 4515 99.6 Minus
CG1889-PB 726 CG1889-RB 24..723 718..19 3500 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1889-RC 1223 CG1889-RC 188..1105 936..19 4545 99.8 Minus
CG1889-RA 1468 CG1889-RA 188..1105 936..19 4545 99.8 Minus
CG1889-RE 1227 CG1889-RE 188..1109 936..19 4495 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9965837..9966397 718..158 2805 100 Minus
X 23542271 X 9965585..9965770 904..719 885 98.4 Minus
X 23542271 X 9966458..9966596 157..19 695 100 Minus
Blast to na_te.dros performed 2015-02-09 19:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Mar 610 Dwil\Mar MAR 610bp Derived from AF518731. 139..189 548..598 111 68.6 Plus

BO07603.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:38 Download gff for BO07603.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1889-PA 79..999 15..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:07:51 Download gff for BO07603.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1889-PA 79..999 15..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:09:54 Download gff for BO07603.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1889-RA 188..1108 15..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:49 Download gff for BO07603.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1889-RA 188..1108 15..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:49 Download gff for BO07603.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9965428..9965460 904..936 100 -> Minus
X 9965586..9965770 719..903 98 -> Minus
X 9965837..9966397 158..718 100 -> Minus
X 9966458..9966599 15..157 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:09:54 Download gff for BO07603.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9859461..9859493 904..936 100 -> Minus
arm_X 9859619..9859803 719..903 98 -> Minus
arm_X 9859870..9860430 158..718 100 -> Minus
arm_X 9860491..9860632 15..157 98   Minus

BO07603.5prime Sequence

813 bp (812 high quality bases) assembled on 2006-01-06

> BO07603.5prime
GAAGTTATCAGTCGACATGTCACAGATGCTGCAGCTGGATGCCTTGGTCA
TGGCCATGGCCTGTCTATCCACCACACAAACGGATCTGGGCGGAGGACTG
TTGGTTCCGCCCTCCTTGGGAAATGCGAGTTCCAGCAGCTGTCCAGTTTC
GGCTTTAAGTGGTCTTACCACTCGAATGCAATCGCTGAACAACGAAATAG
CTAGTGTCAAGGAGCAGATAGGCAGTCTCCAGGAGCAGTTGGTGGATCTG
CGAAGAGCGGGAAGTGCACCGGTGGTGGGACTCGCTTCGCCCAATGCACT
GGCATCTCGATTCCTAGACATTGAGCCGCAACTCCTGGCCAACGGTGGTG
CAGCGGCCGTTCCAATCACTCCGGCAAACTGCCTGAAACAGCAGCACGGT
GTGGTGCGAATCAGACCCCGCTCGAACGTGGAACCGTTCTTTGTTTTTTG
CGATCAGAAGGTCAGAAACGGTGGTTGGACAATGGTAGTTAATCGTTATG
ATGGCAGTGAGGATTTCAATCGAAAGTGGGCGGATTACAAGATCGGTTTC
GGGCCACTAACCACCGAGTTCTTCATCGGATTGGATAAATTGCATCAGAT
TACGAGCAGTGACAACTATGAGCTTTTGGTTCAGCTGCAGAATCGAAAGC
AGGAGCTGAGATATGCCCTATATGATCACTTTAGCATCGGCAGTGAATCG
GAACAGTATCGTCTGAATGTCTTGGGGGATTATCACGGCGATGCTGCCGA
TGCATTGCGTGACCACACGGGAAAGAAATTCAGTACCCACGATAGGGTTA
ATGATGAAAATGA

BO07603.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1889-PA 999 CG1889-RA 1..797 17..813 3985 100 Plus
CG1889-PB 726 CG1889-RB 24..524 313..813 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1889-RC 1223 CG1889-RC 110..906 17..813 3985 100 Plus
CG1889-RA 1468 CG1889-RA 110..906 17..813 3985 100 Plus
CG1889-RE 1227 CG1889-RE 110..910 17..813 3935 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9965837..9966337 313..813 2505 100 Plus
X 23542271 X 9965585..9965770 127..312 930 100 Plus
X 23542271 X 9965350..9965460 17..127 555 100 Plus
Blast to na_te.dros performed 2015-02-12 00:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Mar 610 Dwil\Mar MAR 610bp Derived from AF518731. 139..189 483..433 111 68.6 Minus

BO07603.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:39 Download gff for BO07603.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1889-PA 1..796 17..812 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:07:53 Download gff for BO07603.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1889-PA 1..796 17..812 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:48:20 Download gff for BO07603.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1889-RA 110..905 17..812 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:05 Download gff for BO07603.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1889-RA 110..905 17..812 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:05 Download gff for BO07603.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9965350..9965460 17..127 100 -> Plus
X 9965586..9965770 128..312 100 -> Plus
X 9965837..9966336 313..812 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:48:20 Download gff for BO07603.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9859383..9859493 17..127 100 -> Plus
arm_X 9859619..9859803 128..312 100 -> Plus
arm_X 9859870..9860369 313..812 100   Plus

BO07603.complete Sequence

1030 bp (1030 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630854

> BO07603.complete
GAAGTTATCAGTCGACATGTCACAGATGCTGCAGCTGGATGCCTTGGTCA
TGGCCATGGCCTGTCTATCCACCACACAAACGGATCTGGGCGGAGGACTG
TTGGTTCCGCCCTCCTTGGGAAATGCGAGTTCCAGCAGCTGTCCAGTTTC
GGCTTTAAGTGGTCTTACCACTCGAATGCAATCGCTGAACAACGAAATAG
CTAGTGTCAAGGAGCAGATAGGCAGTCTCCAGGAGCAGTTGGTGGATCTG
CGAAGAGCGGGAAGTGCACCGGTGGTGGGACTCGCTTCGCCCAATGCACT
GGCATCTCGATTCCTAGACATTGAGCCGCAACTCCTGGCCAACGGTGGTG
CAGCGGCCGTTCCAATCACTCCGGCAAACTGCCTGAAACAGCAGCACGGT
GTGGTGCGAATCAGACCCCGCTCGAACGTGGAACCGTTCTTTGTTTTTTG
CGATCAGAAGGTCAGAAACGGTGGTTGGACAATGGTAGTTAATCGTTATG
ATGGCAGTGAGGATTTCAATCGAAAGTGGGCGGATTACAAGATCGGTTTC
GGGCCACTAACCACCGAGTTCTTCATCGGATTGGATAAATTGCATCAGAT
TACGAGCAGTGACAACTATGAGCTTTTGGTTCAGCTGCAGAATCGAAAGC
AGGAGCTGAGATATGCCCTATATGATCACTTTAGCATCGGCAGTGAATCG
GAACAGTATCGTCTGAATGTCTTGGGGGATTATCACGGCGATGCTGCCGA
TGCATTGCGTGACCACACGGGAAAGAAATTCAGTACCCACGATAGGGTTA
ATGATGAAAATGAGCAAAACTGCGCGGCTCAGCAGTCGGGAGCTTTTTGG
TATGGCGGCTCTTGCAATCTCACCAACCCATTTGGCCTATATCAACGCCT
TCTAGAACGGGATGTTGATGGTTTCAAGGGCATTCTATGGCGCGGTTTCT
TAAATGGACCCAAAGGTTCCCTGAAAATAGTTCGCATGATGGTTCGTCCA
CGCGCCGCTTTAGCAAGCTTTCTAGACCAT

BO07603.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1889-RC 999 CG1889-PC 1..996 17..1012 4980 100 Plus
CG1889-RA 999 CG1889-PA 1..996 17..1012 4980 100 Plus
CG1889-RD 1017 CG1889-PD 1..1014 17..1012 4765 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1889-RC 1223 CG1889-RC 110..1105 17..1012 4980 100 Plus
CG1889-RA 1468 CG1889-RA 110..1105 17..1012 4980 100 Plus
CG1889-RE 1227 CG1889-RE 110..1109 17..1012 4905 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9965837..9966397 313..873 2805 100 Plus
X 23542271 X 9965585..9965770 127..312 930 100 Plus
X 23542271 X 9966458..9966596 874..1012 695 100 Plus
X 23542271 X 9965350..9965460 17..127 555 100 Plus
Blast to na_te.dros performed 2014-11-27 23:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Mar 610 Dwil\Mar MAR 610bp Derived from AF518731. 139..189 483..433 111 68.6 Minus

BO07603.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:39 Download gff for BO07603.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RC 1..999 17..1016 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:28 Download gff for BO07603.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RC 110..1108 17..1016 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:28 Download gff for BO07603.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RA 110..1105 17..1014 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:39 Download gff for BO07603.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RC 110..1108 17..1016 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:45 Download gff for BO07603.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RA 110..1105 17..1014 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:45 Download gff for BO07603.complete
Subject Subject Range Query Range Percent Splice Strand
X 9965350..9965460 17..127 100 -> Plus
X 9965586..9965770 128..312 100 -> Plus
X 9965837..9966397 313..873 100 -> Plus
X 9966458..9966596 874..1014 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:28 Download gff for BO07603.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9859383..9859493 17..127 100 -> Plus
arm_X 9859619..9859803 128..312 100 -> Plus
arm_X 9859870..9860430 313..873 100 -> Plus
arm_X 9860491..9860629 874..1014 98   Plus

BO07603.pep Sequence

Translation from 16 to 1030

> BO07603.pep
MSQMLQLDALVMAMACLSTTQTDLGGGLLVPPSLGNASSSSCPVSALSGL
TTRMQSLNNEIASVKEQIGSLQEQLVDLRRAGSAPVVGLASPNALASRFL
DIEPQLLANGGAAAVPITPANCLKQQHGVVRIRPRSNVEPFFVFCDQKVR
NGGWTMVVNRYDGSEDFNRKWADYKIGFGPLTTEFFIGLDKLHQITSSDN
YELLVQLQNRKQELRYALYDHFSIGSESEQYRLNVLGDYHGDAADALRDH
TGKKFSTHDRVNDENEQNCAAQQSGAFWYGGSCNLTNPFGLYQRLLERDV
DGFKGILWRGFLNGPKGSLKIVRMMVRPRAALASFLDH

BO07603.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1889-PC 332 CG1889-PC 1..332 1..332 1731 100 Plus
CG1889-PA 332 CG1889-PA 1..332 1..332 1731 100 Plus
CG1889-PD 338 CG1889-PD 1..338 1..332 1714 98.2 Plus
CG1791-PC 333 CG1791-PC 1..329 5..328 779 47.2 Plus
CG1791-PA 334 CG1791-PA 1..330 5..328 773 47.2 Plus