Clone Sequence Records
BO07606.3prime Sequence
902 bp (820 high quality bases) assembled on 2006-01-06
> BO07606.3prime
ATGGTCTAGAAAGCTTGCTCCTGCAGAGAGAGAAGCTGCCACCTCCTTGA
GTTTGTCGGGCAGCACATTGGCCACACGCTGCAAAAGACCCGAAGTCGGC
TTCTCCGCGCAAAGGACGACCAGCTCGACGGCGTTGTCGCCGTGGAGCAG
CAGCCCCTTGGCCAGGTAGCCCACTCGCATCACTCCCTTCAGGATGCGCA
CGACATTGCCACCATTGTCGGCGTCTTTTTGGAACGAGAAGATCTGATTG
TCGCGTCCGTCTTTCTCCGACGGCTTTTCAGCCTTGTCCTTCTTATTGGC
CGCTCCGGCATCGCTGGGCTGCTCGGCCAGGGCATCGGAGACCAATTTTA
GGGCCCTCTCGGTGTGCGAGACGATGCGCTGGATGGTCTGCAGCTCCTCC
TCCTTCGGATAGATCTCGGCGTGACGGGCAATGGCGTGGCGATCATCGGT
GCTTTCCGGACGACGAACATTTCCGCCGGGCATCATGCCAAAGTGCGGCG
GCGGTCCATTGCCCATGCGCCCAAAGCGCTGGGCACCTCCGAAACTGCGC
GACATCCAGTTGTTGTAGTCATACTCTTCGTTGTATTGTCGGTTGCGCTG
CTCCTCCCAGTAGCCGCCGTCGTGATCATCACCGCCGCGATGCGAGGACA
TCATGGCCCGGTTGGCACGGGCCTCAGCCAGGCGGCGCTGGCGAGGAGTG
GGCTTGAAGTCGACAACTAGATCTGGCTGCACCTTTCGCTTGTACTGCAA
GCGATGGCGACGGCCCTTCATATGCATCTCTTTGGCATTCGGGTCGTTGA
ACTTACAATCGCACAGCTTGCAATTAAAGCTCAAAATCTTGCCCTCTTCG
TCCTTGACCTCTTCAATATACTCGCCGCCTACTGGCTTAATGTTGTCCGT
GT
BO07606.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5215-PA | 1908 | Zn72D-RA | 1022..1905 | 902..19 | 4420 | 100 | Minus |
| CG5215-PB | 2655 | Zn72D-RB | 1022..1888 | 902..36 | 4335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:46:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zn72D-RA | 3410 | CG5215-RA | 1214..2097 | 902..19 | 4420 | 100 | Minus |
| Zn72D-RD | 3240 | CG5215-RD | 1247..2113 | 902..36 | 4335 | 100 | Minus |
| Zn72D-RC | 3106 | CG5215-RC | 1113..1979 | 902..36 | 4335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16109622..16110124 | 36..538 | 2515 | 100 | Plus |
| 3L | 28110227 | 3L | 16110480..16110848 | 534..902 | 1845 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:46:29 has no hits.
BO07606.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:43 Download gff for
BO07606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-PA | 1022..1908 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:07:57 Download gff for
BO07606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5215-PA | 1022..1908 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:07:38 Download gff for
BO07606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RA | 1214..2110 | 3..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:32 Download gff for
BO07606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RA | 1214..2110 | 3..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:32 Download gff for
BO07606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16109622..16110122 | 36..536 | 100 | <- | Plus |
| 3L | 16110483..16110848 | 537..902 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:07:38 Download gff for
BO07606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16102722..16103222 | 36..536 | 100 | <- | Plus |
| arm_3L | 16103583..16103948 | 537..902 | 100 | | Plus |
BO07606.5prime Sequence
838 bp (836 high quality bases) assembled on 2006-01-06
> BO07606.5prime
GAAGTTATCAGTCGACATGGCCAACAACAACTACGCCGGGTTTAACTACG
GCGGCACCCAGTACAATACGGGCCAAGTCTCGTACCCGGCGGTAACCAAT
GCCACCTACGCGAATGCGGCCGCCTATCAGAATGCCGCTGTGGCCGCCGG
ACAGGGTGGTTATGGCGGAGCAGCAGGAGCGGGCGCTGGCGCCACCTCTG
GCCCTGGGGCGGGGGGTTATGGTGGCTACGGCGACTATCGAAGTGCCATG
CAATACGACGCCACCAAGACATTCTATCAGCAGTCGCCGGCCAGCTACAA
CGCCTCCGGTTCGACAGCCTCGGTCAGCAAGACGCACTACTCGGCTCCGC
CAGTCAAGAATCAGGTCAAGGGCAAGATGGACAAGTCGAACGGTGGTCCC
AAGCCCCCTAGTTCGGCTCCTCCGGCGGGCAACAATTACAGTGGCTATGA
TACAGCACTCTACAATGCGGCAAGCATGTATGTGGCCCAACAGCATCAGG
GCAATCCAAACCAAAAACCAAATGGCGGCGCCAATAACTGGTATCAGCGT
AAGATGGGAGCCACCATACCAGGAGCAACGGCCATAAGGGGTATGCGTCC
GAAGGCACCTCCACGTCCCCAGCAGCTGCACTACTGCGAAGTGTGCAAAA
TCTCGTGCGCCGGGCCGCAGACTTATCGCGAGCATCTGGAGGGTCAGAAG
CATAAGAAACGCGAGGCTTCGCTGAAGATGTCCGCTAGTGCCAACAGTGC
TACACAAAATCGTGGTAACAACTACCACTGCGAGCTGTGCGATGTAACAT
GCACTGGTACGGACGCATATGCCGCCCATGTACGCGGA
BO07606.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5215-PA | 1908 | Zn72D-RA | 1..822 | 17..838 | 4110 | 100 | Plus |
| CG5215-PB | 2655 | Zn72D-RB | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zn72D-RD | 3240 | CG5215-RD | 226..1047 | 17..838 | 4110 | 100 | Plus |
| Zn72D-RC | 3106 | CG5215-RC | 92..913 | 17..838 | 4110 | 100 | Plus |
| Zn72D-RF | 3423 | CG5215-RF | 409..1230 | 17..838 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16111048..16111869 | 838..17 | 4110 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 21:59:38 has no hits.
BO07606.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:44 Download gff for
BO07606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-PA | 1..821 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:07:58 Download gff for
BO07606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5215-PB | 1..821 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:02 Download gff for
BO07606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RF | 404..1229 | 13..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:35 Download gff for
BO07606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RF | 404..1229 | 13..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:35 Download gff for
BO07606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16111049..16111870 | 17..837 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:02 Download gff for
BO07606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16104149..16104970 | 17..837 | 99 | -> | Minus |
BO07606.complete Sequence
1939 bp (1939 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630855
> BO07606.complete
GAAGTTATCAGTCGACATGGCCAACAACAACTACGCCGGGTTTAACTACG
GCGGCACCCAGTACAATACGGGCCAAGTCTCGTACCCGGCGGTAACCAAT
GCCACCTACGCGAATGCGGCCGCCTATCAGAATGCCGCTGTGGCCGCCGG
ACAGGGTGGTTATGGCGGAGCAGCAGGAGCGGGCGCTGGCGCCACCTCTG
GCCCTGGGGCGGGGGGTTATGGTGGCTACGGCGACTATCGAAGTGCCATG
CAATACGACGCCACCAAGACATTCTATCAGCAGTCGCCGGCCAGCTACAA
CGCCTCCGGTTCGACAGCCTCGGTCAGCAAGACGCACTACTCGGCTCCGC
CAGTCAAGAATCAGGTCAAGGGCAAGATGGACAAGTCGAACGGTGGTCCC
AAGCCCCCTAGTTCGGCTCCTCCGGCGGGCAACAATTACAGTGGCTATGA
TACAGCACTCTACAATGCGGCAAGCATGTATGTGGCCCAACAGCATCAGG
GCAATCCAAACCAAAAACCAAATGGCGGCGCCAATAACTGGTATCAGCGT
AAGATGGGAGCCACCATACCAGGAGCAACGGCCATAAGGGGTATGCGTCC
GAAGGCACCTCCACGTCCCCAGCAGCTGCACTACTGCGAAGTGTGCAAAA
TCTCGTGCGCCGGGCCGCAGACTTATCGCGAGCATCTGGAGGGTCAGAAG
CATAAGAAACGCGAGGCTTCGCTGAAGATGTCCGCTAGTGCCAACAGTGC
TACACAAAATCGTGGTAACAACTACCACTGCGAGCTGTGCGATGTAACAT
GCACTGGTACGGACGCATATGCCGCCCATGTACGCGGAGCCAAGCATCAG
AAGGTGGTCAAGTTGCACCAGAAACTGGGCAAACCCATTCCCTCGGAGGA
GCCCAAAAAGATGGGCAAGATCAACTTTGTGCCCGCTGCTGCTGGCGGAG
CTGGTGTTGCCAAGACCGAAGGTGGCGCGAACGAGAGCGATGCAGCTGGA
GATCTCGATGATAATCTGGACGATTCGCTGGGCGAAAACACGGACAACAT
TAAGCCAGTAGGCGGCGAGTATATTGAAGAGGTCAAGGACGAAGAGGGCA
AGATTTTGAGCTTTAATTGCAAGCTGTGCGATTGTAAGTTCAACGACCCG
AATGCCAAAGAGATGCATATGAAGGGCCGTCGCCATCGCTTGCAGTACAA
GCGAAAGGTGCAGCCAGATCTAGTTGTCGACTTCAAGCCCACTCCTCGCC
AGCGCCGCCTGGCTGAGGCCCGTGCCAACCGGGCCATGATGTCCTCGCAT
CGCGGCGGTGATGATCACGACGGCGGCTACTGGGAGGAGCAGCGCAACCG
ACAATACAACGAAGAGTATGACTACAACAACTGGATGTCGCGCAGTTTCG
GAGGTGCCCAGCGCTTTGGGCGCATGGGCAATGGACCGCCGCCGCACTTT
GGCATGATGCCCGGCGGAAATGTTCGTCGTCCGGAAAGCACCGATGATCG
CCACGCCATTGCCCGTCACGCCGAGATCTATCCGAAGGAGGAGGAGCTGC
AGACCATCCAGCGCATCGTCTCGCACACCGAGAGGGCCCTAAAATTGGTC
TCCGATGCCCTGGCCGAGCAGCCCAGCGATGCCGGAGCGGCCAATAAGAA
GGACAAGGCTGAAAAGCCGTCGGAGAAAGACGGACGCGACAATCAGATCT
TCTCGTTCCAAAAAGACGCCGACAATGGTGGCAATGTCGTGCGCATCCTG
AAGGGAGTGATGCGAGTGGGCTACCTGGCCAAGGGGCTGCTGCTCCACGG
CGACAACGCCGTCGAGCTGGTCGTCCTTTGCGCGGAGAAGCCGACTTCGG
GTCTTTTGCAGCGTGTGGCCAATGTGCTGCCCGACAAACTCAAGGAGGTG
GCAGCTTCTCTCTCTGCAGGAGCAAGCTTTCTAGACCAT
BO07606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:39:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zn72D-RA | 1908 | CG5215-PA | 1..1905 | 17..1921 | 9525 | 100 | Plus |
| Zn72D-RD | 2655 | CG5215-PD | 1..1888 | 17..1904 | 9440 | 100 | Plus |
| Zn72D-RC | 2655 | CG5215-PC | 1..1888 | 17..1904 | 9440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zn72D-RA | 3410 | CG5215-RA | 193..2097 | 17..1921 | 9525 | 100 | Plus |
| Zn72D-RD | 3240 | CG5215-RD | 226..2113 | 17..1904 | 9440 | 100 | Plus |
| Zn72D-RC | 3106 | CG5215-RC | 92..1979 | 17..1904 | 9440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16110480..16111869 | 1406..17 | 6950 | 100 | Minus |
| 3L | 28110227 | 3L | 16109622..16110124 | 1904..1402 | 2515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:39:05 has no hits.
BO07606.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:51 Download gff for
BO07606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RA | 1..1908 | 17..1925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:05 Download gff for
BO07606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RA | 166..2088 | 13..1937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:58 Download gff for
BO07606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RA | 193..2097 | 17..1923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:53 Download gff for
BO07606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RA | 166..2088 | 13..1937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:33 Download gff for
BO07606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RA | 193..2097 | 17..1923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:33 Download gff for
BO07606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16109622..16110122 | 1404..1904 | 100 | <- | Minus |
| 3L | 16110483..16111869 | 17..1403 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:58 Download gff for
BO07606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16102722..16103222 | 1404..1904 | 100 | <- | Minus |
| arm_3L | 16103583..16104969 | 17..1403 | 100 | | Minus |
BO07606.pep Sequence
Translation from 16 to 1939
> BO07606.pep
MANNNYAGFNYGGTQYNTGQVSYPAVTNATYANAAAYQNAAVAAGQGGYG
GAAGAGAGATSGPGAGGYGGYGDYRSAMQYDATKTFYQQSPASYNASGST
ASVSKTHYSAPPVKNQVKGKMDKSNGGPKPPSSAPPAGNNYSGYDTALYN
AASMYVAQQHQGNPNQKPNGGANNWYQRKMGATIPGATAIRGMRPKAPPR
PQQLHYCEVCKISCAGPQTYREHLEGQKHKKREASLKMSASANSATQNRG
NNYHCELCDVTCTGTDAYAAHVRGAKHQKVVKLHQKLGKPIPSEEPKKMG
KINFVPAAAGGAGVAKTEGGANESDAAGDLDDNLDDSLGENTDNIKPVGG
EYIEEVKDEEGKILSFNCKLCDCKFNDPNAKEMHMKGRRHRLQYKRKVQP
DLVVDFKPTPRQRRLAEARANRAMMSSHRGGDDHDGGYWEEQRNRQYNEE
YDYNNWMSRSFGGAQRFGRMGNGPPPHFGMMPGGNVRRPESTDDRHAIAR
HAEIYPKEEELQTIQRIVSHTERALKLVSDALAEQPSDAGAANKKDKAEK
PSEKDGRDNQIFSFQKDADNGGNVVRILKGVMRVGYLAKGLLLHGDNAVE
LVVLCAEKPTSGLLQRVANVLPDKLKEVAASLSAGASFLDH
BO07606.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zn72D-PA | 635 | CG5215-PA | 1..635 | 1..635 | 3392 | 100 | Plus |
| Zn72D-PD | 884 | CG5215-PD | 1..629 | 1..629 | 3366 | 100 | Plus |
| Zn72D-PC | 884 | CG5215-PC | 1..629 | 1..629 | 3366 | 100 | Plus |
| Zn72D-PF | 884 | CG5215-PF | 1..629 | 1..629 | 3366 | 100 | Plus |
| Zn72D-PE | 631 | CG5215-PE | 1..629 | 1..629 | 3366 | 100 | Plus |
