Clone Sequence Records
BO07607.3prime Sequence
891 bp (850 high quality bases) assembled on 2006-01-06
> BO07607.3prime
ATGGTCTAGAAAGCTTGCGAAAGGAGCTCGGAAAATATCGCGTTTCTGGG
AGTCTTGAATCTTGCCAATGTCTTCCAGCTTCTTGCTGATGTTCGTCGAC
TGCGATTCGATCCACTGCAACGAATTCATATGGGCATTAAGGATTTTTCC
GATCTGTATGATGGGATCAGTGGTGTCCTGGCCCTTGTTGGCCTCGTTCA
AGTTGTCTATTATCTCCTTTAGATCCTCGGACATCTGCTTCAGTTGTGTG
TCCAGATTCTCCACCATCAGGTAGGTTTGGCTGCGTTCCATGTCCACCCT
CGGGAGATTAACGAATTCCTTCTCAAGCGGTCCCAGGCTGTCCTCAAGCT
CTTTTTGCTGCGTGGCTATAAACTCCAGCTCCTGGTCCAGCACTTGCTGA
TCGGTTTTCACTTTTTTCACGGCATCGTTGAGCTCGACGATCTTCCCGTT
GTTGCTGATGAGCAGTTTGTCCCATGCGTTGATCTGAGTGGCCTGTTCGG
TGAATACCTTTTCCTGTTCCTCGAACTCGAGAGTCCACTTGTTGATATGC
TCCTCAAGTTGGTGGTAGGACAATTGGGATGCCGTGGAAACGGCCGATGA
GTCTGTGGTCTTGGTTTCGGTAGTGAGATTGGCAAAAGCACCACCAGTAC
TTAAAGTTGGGGCCGGTGCAGCTCCCTGCGTGGAGGCTATGGCCGACGGA
GCTGCAGTCAGAGTTGTGGACGCAGCGGCCGTGGTCTTGGGAGCTCCCAA
TCCAGACCCGCCCAGCAATCCAGTTGTGGTAGCTGCGGTGTTGGGTGCAC
TGGTTGCTATAGTTGGCACCACAGATGCCGCTGGTTGAGCCGTAAAGCCT
CCGAAAGCGGGAGGAGCAGCAGAGGTTCCAGTCGCGGTCGC
BO07607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6251-PA | 1185 | Nup62-RA | 310..1182 | 891..19 | 4340 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup62-RB | 1345 | CG6251-RB | 407..1279 | 891..19 | 4350 | 99.9 | Minus |
| Nup62-RA | 1452 | CG6251-RA | 514..1386 | 891..19 | 4350 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16344890..16345762 | 891..19 | 4350 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:27:39 has no hits.
BO07607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:45 Download gff for
BO07607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup62-PA | 310..1185 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:00 Download gff for
BO07607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6251-PA | 310..1185 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:25:43 Download gff for
BO07607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup62-RA | 514..1391 | 14..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:49:55 Download gff for
BO07607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup62-RA | 514..1391 | 14..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:49:55 Download gff for
BO07607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16344890..16345767 | 14..891 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:25:43 Download gff for
BO07607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12232395..12233272 | 14..891 | 99 | | Minus |
BO07607.5prime Sequence
858 bp (807 high quality bases) assembled on 2006-01-06
> BO07607.5prime
GAAGTTATCAGTCGACATGGTATTCCAGTTGCCAACAACAACCGCCGCCC
CGACCGGAGGCGCAACATCGTCGTTTTCCTTCGGCCTCAGCACAGGAACA
CCAGCCGCAGCACCAGCTTCAGGAGCAGCAACCACGGCTCCCGCCACAAA
AACCACATTCTCTTTCGGAACACCGGCACCTACTGCTGGTATCGGTGGCG
GAGATGCAGACAACAGCAAGGCGCAGGCTCCACCAGCCTTTGGATTTGGC
CTGGGATCCGGGACTGCTTCAGCTCCCCTCACGCTGGGCACTCAAGCCGC
CGCAAATCCAGCGTCCACCACTTCTGCGACCGCGACTGGAACCTCTGCTG
CTCCTCCCGCCTTCGGAGGCTTTACGGCTCAACCAGCGGCATCTGTGGTG
CCAACTATAGCAACCAGTGCACCCAACACCGCAGCTACCACAACTGGATT
GCTGGGCGGGTCTGGATTGGGAGCTCCCAAGACCACGGCCGCTGCGTCCA
CAACTCTGACTGCAGCTCCGTCGGCCATAGCCTCCACGCAGGGAGCTGCA
CCGGCCCCAACTTTAAGTACTGGTGGTGCTTTTGCCAATCTCACTACCGA
AACCAAGACCACAGACTCATCGGCCGTTTCCACGGCATCCCAATTGTCCT
ACCACCAACTTGAGGAGCATATCAACAAGTGGACTCTCGAGTTCGAGGAA
CAGGAAAAGGTATTCACCGAACAGGCCACTCAGATCAACGCATGGGACAA
ACTGCTCATCAGCAACAACGGGAAGATCGTCGAGCTCAACGATGCCGTGA
AAAAAGTGAAAACCGATCAGCAAGTGCTGGACCAGGAGCTGGAGTTTATA
GCCACGCA
BO07607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6251-PA | 1185 | Nup62-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup62-RB | 1345 | CG6251-RB | 97..939 | 16..858 | 4215 | 100 | Plus |
| Nup62-RA | 1452 | CG6251-RA | 204..1046 | 16..858 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16344580..16345422 | 16..858 | 4215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:28:30 has no hits.
BO07607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:46 Download gff for
BO07607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup62-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:01 Download gff for
BO07607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6251-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:43:54 Download gff for
BO07607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup62-RA | 204..1045 | 16..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:29 Download gff for
BO07607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup62-RA | 204..1045 | 16..857 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:29 Download gff for
BO07607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16344580..16345421 | 16..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:43:54 Download gff for
BO07607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12232085..12232926 | 16..857 | 100 | | Plus |
BO07607.complete Sequence
1216 bp (1216 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630856
> BO07607.complete
GAAGTTATCAGTCGACATGGTATTCCAGTTGCCAACAACAACCGCCGCCC
CGACCGGAGGCGCAACATCGTCGTTTTCCTTCGGCCTCAGCACAGGAACA
CCAGCCGCAGCACCAGCTTCAGGAGCAGCAACCACGGCTCCCGCCACAAA
AACCACATTCTCTTTCGGAACACCGGCACCTACTGCTGGTATCGGTGGCG
GAGATGCAGACAACAGCAAGGCGCAGGCTCCACCAGCCTTTGGATTTGGC
CTGGGATCCGGGACTGCTTCAGCTCCCCTCACGCTGGGCACTCAAGCCGC
CGCAAATCCAGCGTCCACCACTTCTGCGACCGCGACTGGAACCTCTGCTG
CTCCTCCCGCCTTCGGAGGCTTTACGGCTCAACCAGCGGCATCTGTGGTG
CCAACTATAGCAACCAGTGCACCCAACACCGCAGCTACCACAACTGGATT
GCTGGGCGGGTCTGGATTGGGAGCTCCCAAGACCACGGCCGCTGCGTCCA
CAACTCTGACTGCAGCTCCGTCGGCCATAGCCTCCACGCAGGGAGCTGCA
CCGGCCCCAACTTTAAGTACTGGTGGTGCTTTTGCCAATCTCACTACCGA
AACCAAGACCACAGACTCATCGGCCGTTTCCACGGCATCCCAATTGTCCT
ACCACCAACTTGAGGAGCATATCAACAAGTGGACTCTCGAGTTCGAGGAA
CAGGAAAAGGTATTCACCGAACAGGCCACTCAGATCAACGCATGGGACAA
ACTGCTCATCAGCAACAACGGGAAGATCGTCGAGCTCAACGATGCCGTGA
AAAAAGTGAAAACCGATCAGCAAGTGCTGGACCAGGAGCTGGAGTTTATA
GCCACGCAGCAAAAAGAGCTTGAGGACAGCCTGGGACCGCTTGAGAAGGA
ATTCGTTAATCTCCCGAGGGTGGACATGGAACGCAGCCAAACCTACCTGA
TGGTGGAGAATCTGGACACACAACTGAAGCAGATGTCCGAGGATCTAAAG
GAGATAATAGACAACTTGAACGAGGCCAACAAGGGCCAGGACACCACTGA
TCCCATCATACAGATCGGAAAAATCCTTAATGCCCATATGAATTCGTTGC
AGTGGATCGAATCGCAGTCGACGAACATCAGCAAGAAGCTGGAAGACATT
GGCAAGATTCAAGACTCCCAGAAACGCGATATTTTCCGAGCTCCTTTCGC
AAGCTTTCTAGACCAT
BO07607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup62-RB | 1185 | CG6251-PB | 1..1182 | 17..1198 | 5910 | 100 | Plus |
| Nup62-RA | 1185 | CG6251-PA | 1..1182 | 17..1198 | 5910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup62-RB | 1345 | CG6251-RB | 97..1279 | 16..1198 | 5915 | 100 | Plus |
| Nup62-RA | 1452 | CG6251-RA | 204..1386 | 16..1198 | 5915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:58:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16344580..16345762 | 16..1198 | 5915 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:58:44 has no hits.
BO07607.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:15:41 Download gff for
BO07607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup62-RA | 1..1185 | 17..1202 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:37:31 Download gff for
BO07607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup62-RA | 204..1391 | 16..1203 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:57 Download gff for
BO07607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup62-RA | 205..1386 | 17..1200 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:15:42 Download gff for
BO07607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup62-RA | 204..1391 | 16..1203 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:31 Download gff for
BO07607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup62-RA | 205..1386 | 17..1200 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:31 Download gff for
BO07607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16344581..16345762 | 17..1200 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:57 Download gff for
BO07607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12232086..12233267 | 17..1200 | 99 | | Plus |
BO07607.pep Sequence
Translation from 16 to 1216
> BO07607.pep
MVFQLPTTTAAPTGGATSSFSFGLSTGTPAAAPASGAATTAPATKTTFSF
GTPAPTAGIGGGDADNSKAQAPPAFGFGLGSGTASAPLTLGTQAAANPAS
TTSATATGTSAAPPAFGGFTAQPAASVVPTIATSAPNTAATTTGLLGGSG
LGAPKTTAAASTTLTAAPSAIASTQGAAPAPTLSTGGAFANLTTETKTTD
SSAVSTASQLSYHQLEEHINKWTLEFEEQEKVFTEQATQINAWDKLLISN
NGKIVELNDAVKKVKTDQQVLDQELEFIATQQKELEDSLGPLEKEFVNLP
RVDMERSQTYLMVENLDTQLKQMSEDLKEIIDNLNEANKGQDTTDPIIQI
GKILNAHMNSLQWIESQSTNISKKLEDIGKIQDSQKRDIFRAPFASFLDH
BO07607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup62-PB | 394 | CG6251-PB | 1..394 | 1..394 | 1978 | 100 | Plus |
| Nup62-PA | 394 | CG6251-PA | 1..394 | 1..394 | 1978 | 100 | Plus |
| Nup153-PC | 1883 | CG4453-PC | 1268..1494 | 3..210 | 196 | 32.5 | Plus |
| Nup153-PA | 1883 | CG4453-PA | 1268..1494 | 3..210 | 196 | 32.5 | Plus |
| Nup153-PD | 1929 | CG4453-PD | 1268..1494 | 3..210 | 196 | 32.5 | Plus |
