Clone BO07609 Report

Search the DGRC for BO07609

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:76
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptVha36-1-RA
Protein status:BO07609.pep: validated full length
Sequenced Size:772

Clone Sequence Records

BO07609.3prime Sequence

770 bp (769 high quality bases) assembled on 2006-01-06

> BO07609.3prime
ATGGTCTAGAAAGCTTGCGAACAGCACGTCGTCATCGCCCTCATCCAGGA
TATTGGCCTGCTGGCGCACATCGATGCCCTGCTGCAGCAACTCCGCCTTC
TTGGCGTCGGCCTTGATGCGTGCCTCGCGCTTCTTGTCCTGGATCTTCTT
CAGTCGGTAGAACTCCTCACGCTCGAGCTCGTCCAGCTCCGAGATGATGT
AGGCCAAAGTCCTATCGATTCGGGGGATGATCACATGCTCAATGGCGTTC
ACACGACGGTTGGTGATCTTGATCACCTCGTCCAGGGTGACGAATGAGGT
CTGCAGCGAGGCCAGCTCCACGAGCAGTTTAACGGCGCTTTGGTAGTTCT
TCTTCAGCTTGGCCAGCTGCTGACCACCACGGGCTAGACCGGCCAGTTCG
TAGGTGTCGGATCCGTCCTGGTAGGACTCGAAAACGGGCAGAGTGACACC
AGCCACGTTGTCCTTCTTGGTGCGGATCTTGATCTGGGCCTTGGTCACGT
TTTGCAGCACCACTTGGTTGATGTCGCCAGACGTGAATTTGGCCTCCGCC
AGCGAGAAGGCTGCCTCTTTCATAACATCACCCATCAGGGTCTTGGTCTC
GATGATCTTGCCCAGAATCAAACGGAATCGCATCTGCAGGGCATCCGCCT
TCTTCTTGAGCAGACCGTGACCTTTCTGGGCTCCAGCCAGACGGGCCTTC
ATCAACATCTGGGCACCACGGGACGGGAAAATCGGTAGCCTATCTTTTCC
GGACATGTCGACTGATAACT

BO07609.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8186-PA 741 Vha36-RA 1..738 756..19 3690 100 Minus
CG8310-PA 750 CG8310-RA 247..305 510..452 270 98.3 Minus
CG8310-PA 750 CG8310-RA 91..203 666..554 265 89.3 Minus
CG8310-PA 750 CG8310-RA 376..425 381..332 200 96 Minus
CG8310-PA 750 CG8310-RA 583..635 174..122 190 94.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
Vha36-1-RA 1064 CG8186-RA 103..840 756..19 3690 100 Minus
Vha36-3-RC 1294 CG8310-RC 374..986 729..117 1430 82.2 Minus
Vha36-3-RB 1138 CG8310-RB 218..830 729..117 1430 82.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15541537..15542274 756..19 3690 100 Minus
X 23542271 X 2579579..2579942 236..599 860 82.4 Plus
X 23542271 X 2579996..2580112 598..714 285 82.9 Plus
X 23542271 X 2579399..2579516 117..234 275 82.2 Plus
Blast to na_te.dros performed on 2015-02-13 16:26:25 has no hits.

BO07609.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:48 Download gff for BO07609.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha36-PA 1..741 15..756 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:06 Download gff for BO07609.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8186-PA 1..741 15..756 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:12:09 Download gff for BO07609.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha36-1-RA 96..849 7..764 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:57:52 Download gff for BO07609.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha36-1-RA 96..849 7..764 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:57:52 Download gff for BO07609.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15541530..15542283 7..764 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:12:09 Download gff for BO07609.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11429035..11429788 7..764 98   Minus

BO07609.5prime Sequence

770 bp (764 high quality bases) assembled on 2006-01-06

> BO07609.5prime
GAAGTTATCAGTCGACATGTCCGGAAAAGATAGGCTACCGATTTTCCCGT
CCCGTGGTGCCCAGATGTTGATGAAGGCCCGTCTGGCTGGAGCCCAGAAA
GGTCACGGTCTGCTCAAGAAGAAGGCGGATGCCCTGCAGATGCGATTCCG
TTTGATTCTGGGCAAGATCATCGAGACCAAGACCCTGATGGGTGATGTTA
TGAAAGAGGCAGCCTTCTCGCTGGCGGAGGCCAAATTCACGTCTGGCGAC
ATCAACCAAGTGGTGCTGCAAAACGTGACCAAGGCCCAGATCAAGATCCG
CACCAAGAAGGACAACGTGGCTGGTGTCACTCTGCCCGTTTTCGAGTCCT
ACCAGGACGGATCCGACACCTACGAACTGGCCGGTCTAGCCCGTGGTGGT
CAGCAGCTGGCCAAGCTGAAGAAGAACTACCAAAGCGCCGTTAAACTGCT
CGTGGAGCTGGCCTCGCTGCAGACCTCATTCGTCACCCTGGACGAGGTGA
TCAAGATCACCAACCGTCGTGTGAACGCCATTGAGCATGTGATCATCCCC
CGAATCGATAGGACTTTGGCCTACATCATCTCGGAGCTGGACGAGCTCGA
GCGTGAGGAGTTCTACCGACTGAAGAAGATCCAGGACAAGAAGCGCGAGG
CACGCATCAAGGCCGACGCCAAGAAGGCGGAGTTGCTGCAGCAGGGCATC
GATGTGCGCCAGCAGGCCAATATCCTGGATGAGGGCGATGACGACGTGCT
GTTCGCAAGCTTTCTAGACC

BO07609.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8186-PA 741 Vha36-RA 1..738 17..754 3690 100 Plus
CG8310-PA 750 CG8310-RA 247..305 263..321 270 98.3 Plus
CG8310-PA 750 CG8310-RA 91..203 107..219 265 89.3 Plus
CG8310-PA 750 CG8310-RA 376..425 392..441 200 96 Plus
CG8310-PA 750 CG8310-RA 583..635 599..651 190 94.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
Vha36-1-RA 1064 CG8186-RA 103..840 17..754 3690 100 Plus
Vha36-3-RC 1294 CG8310-RC 374..986 44..656 1430 82.2 Plus
Vha36-3-RB 1138 CG8310-RB 218..830 44..656 1430 82.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15541537..15542274 17..754 3690 100 Plus
X 23542271 X 2579579..2579942 537..174 860 82.4 Minus
X 23542271 X 2579996..2580112 175..59 285 82.9 Minus
X 23542271 X 2579399..2579516 656..539 275 82.2 Minus
Blast to na_te.dros performed on 2015-02-12 10:02:58 has no hits.

BO07609.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:49 Download gff for BO07609.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha36-PA 1..741 17..758 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:07 Download gff for BO07609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8186-PA 1..741 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:45:38 Download gff for BO07609.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha36-1-RA 96..849 9..766 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:00:55 Download gff for BO07609.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha36-1-RA 96..849 9..766 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:00:55 Download gff for BO07609.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15541530..15542283 9..766 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:45:38 Download gff for BO07609.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11429035..11429788 9..766 98   Plus

BO07609.complete Sequence

772 bp (772 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630857

> BO07609.complete
GAAGTTATCAGTCGACATGTCCGGAAAAGATAGGCTACCGATTTTCCCGT
CCCGTGGTGCCCAGATGTTGATGAAGGCCCGTCTGGCTGGAGCCCAGAAA
GGTCACGGTCTGCTCAAGAAGAAGGCGGATGCCCTGCAGATGCGATTCCG
TTTGATTCTGGGCAAGATCATCGAGACCAAGACCCTGATGGGTGATGTTA
TGAAAGAGGCAGCCTTCTCGCTGGCGGAGGCCAAATTCACGTCTGGCGAC
ATCAACCAAGTGGTGCTGCAAAACGTGACCAAGGCCCAGATCAAGATCCG
CACCAAGAAGGACAACGTGGCTGGTGTCACTCTGCCCGTTTTCGAGTCCT
ACCAGGACGGATCCGACACCTACGAACTGGCCGGTCTAGCCCGTGGTGGT
CAGCAGCTGGCCAAGCTGAAGAAGAACTACCAAAGCGCCGTTAAACTGCT
CGTGGAGCTGGCCTCGCTGCAGACCTCATTCGTCACCCTGGACGAGGTGA
TCAAGATCACCAACCGTCGTGTGAACGCCATTGAGCATGTGATCATCCCC
CGAATCGATAGGACTTTGGCCTACATCATCTCGGAGCTGGACGAGCTCGA
GCGTGAGGAGTTCTACCGACTGAAGAAGATCCAGGACAAGAAGCGCGAGG
CACGCATCAAGGCCGACGCCAAGAAGGCGGAGTTGCTGCAGCAGGGCATC
GATGTGCGCCAGCAGGCCAATATCCTGGATGAGGGCGATGACGACGTGCT
GTTCGCAAGCTTTCTAGACCAT

BO07609.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
Vha36-1-RA 741 CG8186-PA 1..738 17..754 3690 100 Plus
Vha36-3-RC 750 CG8310-PC 28..640 44..656 1430 82.2 Plus
Vha36-3-RB 750 CG8310-PB 28..640 44..656 1430 82.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Vha36-1-RA 1064 CG8186-RA 103..840 17..754 3690 100 Plus
Vha36-3-RC 1294 CG8310-RC 374..986 44..656 1430 82.2 Plus
Vha36-3-RB 1138 CG8310-RB 218..830 44..656 1430 82.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15541537..15542274 17..754 3690 100 Plus
X 23542271 X 2579579..2579942 537..174 860 82.4 Minus
X 23542271 X 2579996..2580112 175..59 285 82.9 Minus
X 23542271 X 2579399..2579516 656..539 275 82.2 Minus
Blast to na_te.dros performed on 2014-11-26 15:55:08 has no hits.

BO07609.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:47 Download gff for BO07609.complete
Subject Subject Range Query Range Percent Splice Strand
Vha36-RA 1..741 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:56 Download gff for BO07609.complete
Subject Subject Range Query Range Percent Splice Strand
Vha36-RA 114..867 9..766 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:09 Download gff for BO07609.complete
Subject Subject Range Query Range Percent Splice Strand
Vha36-1-RA 103..840 17..756 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:47 Download gff for BO07609.complete
Subject Subject Range Query Range Percent Splice Strand
Vha36-RA 114..867 9..766 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:46 Download gff for BO07609.complete
Subject Subject Range Query Range Percent Splice Strand
Vha36-1-RA 103..840 17..756 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:46 Download gff for BO07609.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15541537..15542274 17..756 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:09 Download gff for BO07609.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11429042..11429779 17..756 99   Plus

BO07609.pep Sequence

Translation from 16 to 772

> BO07609.pep
MSGKDRLPIFPSRGAQMLMKARLAGAQKGHGLLKKKADALQMRFRLILGK
IIETKTLMGDVMKEAAFSLAEAKFTSGDINQVVLQNVTKAQIKIRTKKDN
VAGVTLPVFESYQDGSDTYELAGLARGGQQLAKLKKNYQSAVKLLVELAS
LQTSFVTLDEVIKITNRRVNAIEHVIIPRIDRTLAYIISELDELEREEFY
RLKKIQDKKREARIKADAKKAELLQQGIDVRQQANILDEGDDDVLFASFL
DH

BO07609.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
Vha36-1-PA 246 CG8186-PA 1..246 1..246 1204 100 Plus
Vha36-3-PC 249 CG8310-PC 1..249 1..246 1015 83.9 Plus
Vha36-3-PB 249 CG8310-PB 1..249 1..246 1015 83.9 Plus
Vha36-2-PA 373 CG13167-PA 1..214 1..214 388 40.5 Plus