Clone Sequence Records
BO07609.3prime Sequence
770 bp (769 high quality bases) assembled on 2006-01-06
> BO07609.3prime
ATGGTCTAGAAAGCTTGCGAACAGCACGTCGTCATCGCCCTCATCCAGGA
TATTGGCCTGCTGGCGCACATCGATGCCCTGCTGCAGCAACTCCGCCTTC
TTGGCGTCGGCCTTGATGCGTGCCTCGCGCTTCTTGTCCTGGATCTTCTT
CAGTCGGTAGAACTCCTCACGCTCGAGCTCGTCCAGCTCCGAGATGATGT
AGGCCAAAGTCCTATCGATTCGGGGGATGATCACATGCTCAATGGCGTTC
ACACGACGGTTGGTGATCTTGATCACCTCGTCCAGGGTGACGAATGAGGT
CTGCAGCGAGGCCAGCTCCACGAGCAGTTTAACGGCGCTTTGGTAGTTCT
TCTTCAGCTTGGCCAGCTGCTGACCACCACGGGCTAGACCGGCCAGTTCG
TAGGTGTCGGATCCGTCCTGGTAGGACTCGAAAACGGGCAGAGTGACACC
AGCCACGTTGTCCTTCTTGGTGCGGATCTTGATCTGGGCCTTGGTCACGT
TTTGCAGCACCACTTGGTTGATGTCGCCAGACGTGAATTTGGCCTCCGCC
AGCGAGAAGGCTGCCTCTTTCATAACATCACCCATCAGGGTCTTGGTCTC
GATGATCTTGCCCAGAATCAAACGGAATCGCATCTGCAGGGCATCCGCCT
TCTTCTTGAGCAGACCGTGACCTTTCTGGGCTCCAGCCAGACGGGCCTTC
ATCAACATCTGGGCACCACGGGACGGGAAAATCGGTAGCCTATCTTTTCC
GGACATGTCGACTGATAACT
BO07609.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8186-PA | 741 | Vha36-RA | 1..738 | 756..19 | 3690 | 100 | Minus |
CG8310-PA | 750 | CG8310-RA | 247..305 | 510..452 | 270 | 98.3 | Minus |
CG8310-PA | 750 | CG8310-RA | 91..203 | 666..554 | 265 | 89.3 | Minus |
CG8310-PA | 750 | CG8310-RA | 376..425 | 381..332 | 200 | 96 | Minus |
CG8310-PA | 750 | CG8310-RA | 583..635 | 174..122 | 190 | 94.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:26:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha36-1-RA | 1064 | CG8186-RA | 103..840 | 756..19 | 3690 | 100 | Minus |
Vha36-3-RC | 1294 | CG8310-RC | 374..986 | 729..117 | 1430 | 82.2 | Minus |
Vha36-3-RB | 1138 | CG8310-RB | 218..830 | 729..117 | 1430 | 82.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15541537..15542274 | 756..19 | 3690 | 100 | Minus |
X | 23542271 | X | 2579579..2579942 | 236..599 | 860 | 82.4 | Plus |
X | 23542271 | X | 2579996..2580112 | 598..714 | 285 | 82.9 | Plus |
X | 23542271 | X | 2579399..2579516 | 117..234 | 275 | 82.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:26:25 has no hits.
BO07609.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:48 Download gff for
BO07609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-PA | 1..741 | 15..756 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:06 Download gff for
BO07609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8186-PA | 1..741 | 15..756 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:12:09 Download gff for
BO07609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-1-RA | 96..849 | 7..764 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:57:52 Download gff for
BO07609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-1-RA | 96..849 | 7..764 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:57:52 Download gff for
BO07609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15541530..15542283 | 7..764 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:12:09 Download gff for
BO07609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11429035..11429788 | 7..764 | 98 | | Minus |
BO07609.5prime Sequence
770 bp (764 high quality bases) assembled on 2006-01-06
> BO07609.5prime
GAAGTTATCAGTCGACATGTCCGGAAAAGATAGGCTACCGATTTTCCCGT
CCCGTGGTGCCCAGATGTTGATGAAGGCCCGTCTGGCTGGAGCCCAGAAA
GGTCACGGTCTGCTCAAGAAGAAGGCGGATGCCCTGCAGATGCGATTCCG
TTTGATTCTGGGCAAGATCATCGAGACCAAGACCCTGATGGGTGATGTTA
TGAAAGAGGCAGCCTTCTCGCTGGCGGAGGCCAAATTCACGTCTGGCGAC
ATCAACCAAGTGGTGCTGCAAAACGTGACCAAGGCCCAGATCAAGATCCG
CACCAAGAAGGACAACGTGGCTGGTGTCACTCTGCCCGTTTTCGAGTCCT
ACCAGGACGGATCCGACACCTACGAACTGGCCGGTCTAGCCCGTGGTGGT
CAGCAGCTGGCCAAGCTGAAGAAGAACTACCAAAGCGCCGTTAAACTGCT
CGTGGAGCTGGCCTCGCTGCAGACCTCATTCGTCACCCTGGACGAGGTGA
TCAAGATCACCAACCGTCGTGTGAACGCCATTGAGCATGTGATCATCCCC
CGAATCGATAGGACTTTGGCCTACATCATCTCGGAGCTGGACGAGCTCGA
GCGTGAGGAGTTCTACCGACTGAAGAAGATCCAGGACAAGAAGCGCGAGG
CACGCATCAAGGCCGACGCCAAGAAGGCGGAGTTGCTGCAGCAGGGCATC
GATGTGCGCCAGCAGGCCAATATCCTGGATGAGGGCGATGACGACGTGCT
GTTCGCAAGCTTTCTAGACC
BO07609.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8186-PA | 741 | Vha36-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
CG8310-PA | 750 | CG8310-RA | 247..305 | 263..321 | 270 | 98.3 | Plus |
CG8310-PA | 750 | CG8310-RA | 91..203 | 107..219 | 265 | 89.3 | Plus |
CG8310-PA | 750 | CG8310-RA | 376..425 | 392..441 | 200 | 96 | Plus |
CG8310-PA | 750 | CG8310-RA | 583..635 | 599..651 | 190 | 94.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha36-1-RA | 1064 | CG8186-RA | 103..840 | 17..754 | 3690 | 100 | Plus |
Vha36-3-RC | 1294 | CG8310-RC | 374..986 | 44..656 | 1430 | 82.2 | Plus |
Vha36-3-RB | 1138 | CG8310-RB | 218..830 | 44..656 | 1430 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:02:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15541537..15542274 | 17..754 | 3690 | 100 | Plus |
X | 23542271 | X | 2579579..2579942 | 537..174 | 860 | 82.4 | Minus |
X | 23542271 | X | 2579996..2580112 | 175..59 | 285 | 82.9 | Minus |
X | 23542271 | X | 2579399..2579516 | 656..539 | 275 | 82.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:02:58 has no hits.
BO07609.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:49 Download gff for
BO07609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-PA | 1..741 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:07 Download gff for
BO07609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8186-PA | 1..741 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:45:38 Download gff for
BO07609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-1-RA | 96..849 | 9..766 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:00:55 Download gff for
BO07609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-1-RA | 96..849 | 9..766 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:00:55 Download gff for
BO07609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15541530..15542283 | 9..766 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:45:38 Download gff for
BO07609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11429035..11429788 | 9..766 | 98 | | Plus |
BO07609.complete Sequence
772 bp (772 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630857
> BO07609.complete
GAAGTTATCAGTCGACATGTCCGGAAAAGATAGGCTACCGATTTTCCCGT
CCCGTGGTGCCCAGATGTTGATGAAGGCCCGTCTGGCTGGAGCCCAGAAA
GGTCACGGTCTGCTCAAGAAGAAGGCGGATGCCCTGCAGATGCGATTCCG
TTTGATTCTGGGCAAGATCATCGAGACCAAGACCCTGATGGGTGATGTTA
TGAAAGAGGCAGCCTTCTCGCTGGCGGAGGCCAAATTCACGTCTGGCGAC
ATCAACCAAGTGGTGCTGCAAAACGTGACCAAGGCCCAGATCAAGATCCG
CACCAAGAAGGACAACGTGGCTGGTGTCACTCTGCCCGTTTTCGAGTCCT
ACCAGGACGGATCCGACACCTACGAACTGGCCGGTCTAGCCCGTGGTGGT
CAGCAGCTGGCCAAGCTGAAGAAGAACTACCAAAGCGCCGTTAAACTGCT
CGTGGAGCTGGCCTCGCTGCAGACCTCATTCGTCACCCTGGACGAGGTGA
TCAAGATCACCAACCGTCGTGTGAACGCCATTGAGCATGTGATCATCCCC
CGAATCGATAGGACTTTGGCCTACATCATCTCGGAGCTGGACGAGCTCGA
GCGTGAGGAGTTCTACCGACTGAAGAAGATCCAGGACAAGAAGCGCGAGG
CACGCATCAAGGCCGACGCCAAGAAGGCGGAGTTGCTGCAGCAGGGCATC
GATGTGCGCCAGCAGGCCAATATCCTGGATGAGGGCGATGACGACGTGCT
GTTCGCAAGCTTTCTAGACCAT
BO07609.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha36-1-RA | 741 | CG8186-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
Vha36-3-RC | 750 | CG8310-PC | 28..640 | 44..656 | 1430 | 82.2 | Plus |
Vha36-3-RB | 750 | CG8310-PB | 28..640 | 44..656 | 1430 | 82.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha36-1-RA | 1064 | CG8186-RA | 103..840 | 17..754 | 3690 | 100 | Plus |
Vha36-3-RC | 1294 | CG8310-RC | 374..986 | 44..656 | 1430 | 82.2 | Plus |
Vha36-3-RB | 1138 | CG8310-RB | 218..830 | 44..656 | 1430 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15541537..15542274 | 17..754 | 3690 | 100 | Plus |
X | 23542271 | X | 2579579..2579942 | 537..174 | 860 | 82.4 | Minus |
X | 23542271 | X | 2579996..2580112 | 175..59 | 285 | 82.9 | Minus |
X | 23542271 | X | 2579399..2579516 | 656..539 | 275 | 82.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:55:08 has no hits.
BO07609.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:47 Download gff for
BO07609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-RA | 1..741 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:56 Download gff for
BO07609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-RA | 114..867 | 9..766 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:09 Download gff for
BO07609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-1-RA | 103..840 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:47 Download gff for
BO07609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-RA | 114..867 | 9..766 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:46 Download gff for
BO07609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha36-1-RA | 103..840 | 17..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:46 Download gff for
BO07609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15541537..15542274 | 17..756 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:09 Download gff for
BO07609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11429042..11429779 | 17..756 | 99 | | Plus |
BO07609.pep Sequence
Translation from 16 to 772
> BO07609.pep
MSGKDRLPIFPSRGAQMLMKARLAGAQKGHGLLKKKADALQMRFRLILGK
IIETKTLMGDVMKEAAFSLAEAKFTSGDINQVVLQNVTKAQIKIRTKKDN
VAGVTLPVFESYQDGSDTYELAGLARGGQQLAKLKKNYQSAVKLLVELAS
LQTSFVTLDEVIKITNRRVNAIEHVIIPRIDRTLAYIISELDELEREEFY
RLKKIQDKKREARIKADAKKAELLQQGIDVRQQANILDEGDDDVLFASFL
DH
BO07609.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha36-1-PA | 246 | CG8186-PA | 1..246 | 1..246 | 1204 | 100 | Plus |
Vha36-3-PC | 249 | CG8310-PC | 1..249 | 1..246 | 1015 | 83.9 | Plus |
Vha36-3-PB | 249 | CG8310-PB | 1..249 | 1..246 | 1015 | 83.9 | Plus |
Vha36-2-PA | 373 | CG13167-PA | 1..214 | 1..214 | 388 | 40.5 | Plus |