Clone BO07610 Report

Search the DGRC for BO07610

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:76
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG6372-RA
Protein status:BO07610.pep: validated full length
Sequenced Size:1699

Clone Sequence Records

BO07610.3prime Sequence

833 bp (813 high quality bases) assembled on 2006-01-06

> BO07610.3prime
ATGGTCTAGAAAGCTTGCCTTGCCCATCTTGGGAGCGGTGTCTTTGCAGA
TCGTCTGTGCAATGAATTCGATAAGAGTACGAGTGGGTCGGCCAGCCATT
CCGCGTCGCAGGTACTCGAAGTCAATACCGTTGGTGACCATCACATTGGT
GGCATCAATATGCATCCATTGGCCGCAAGGCACAAATTCACGAAGGAAGG
CGGCAGCCTTGCAAGGGCGTCCACCACGACCGATACCGTAGTTCTGGACA
TCACTTCGTCCTCCGGCACGAACCGCCTTGCTGTAGAAGTTCCACAACGG
GAAGCGCCACACGCGGTCTCCAGTGTGCATGCTGGCGTGCTTGATCTGCT
GCCAAAGGATCTCGGAGTTGGTGAACACACCGCAAGCAGCTTCGTCGAGG
GACTGACGCATGTATCCCGAACAGGTGCCGATGTCAATGATGCACTTGGG
GCAGAAGTTCTGGGCATACAGCAGGGCATCGGCCAGAACCAAGACATCCT
CGTGATCCGTGCACTGCACCTCAATGGTCTTGCCATTCATAGACTTGACC
ATGTCACCTGGTCGGAAGGAGTTGCAGCCAACGACGTTTTCGCACAGAGG
AATAAGGCCTCGGATATTGACAGGCAATCTAAGTCCAGCAACGGCCCGAC
ATGTGGCCACCACCACAGCCGCTCCAGTCATGTCGCCGCGCATGTTGAAG
AGCTCCTTCTTTTTCTTCAGGCACAGACCGCCGGCATCGTAGGTGATGCC
CTGTCCAACCAGGACGATGGGTCTCTCCTCCGCGCAGGTGCCGTAGTAGC
TCAGCTCCAGAAAGATTGGTGGTTCGCAAGAGG

BO07610.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6372-PA 1668 CG6372-RA 851..1665 833..19 4075 100 Minus
CG32351-PA 1659 CG32351-RA 1297..1536 378..139 875 94.5 Minus
CG32351-PA 1659 CG32351-RA 842..926 833..749 300 94.1 Minus
CG32351-PA 1659 CG32351-RA 1078..1166 597..509 170 87.6 Minus
CG32351-PA 1659 CG32351-RA 1213..1268 462..407 155 91 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap1-RA 2121 CG6372-RA 1053..1867 833..19 4075 100 Minus
S-Lap2-RA 2093 CG32351-RA 1098..1903 833..28 2200 84.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8618556..8619021 621..156 2330 100 Minus
3L 28110227 3L 8621252..8621717 621..156 1475 87.8 Minus
3L 28110227 3L 8618287..8618500 833..620 1070 100 Minus
3L 28110227 3L 8619083..8619220 156..19 690 100 Minus
3L 28110227 3L 8620985..8621183 833..635 560 85.4 Minus
Blast to na_te.dros performed on 2015-02-11 17:28:57 has no hits.

BO07610.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:51 Download gff for BO07610.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6372-PA 851..1668 18..833 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:08 Download gff for BO07610.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6372-PA 851..1668 18..833 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:43:56 Download gff for BO07610.3prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap1-RA 1053..1867 19..833 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:19 Download gff for BO07610.3prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap1-RA 1053..1867 19..833 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:19 Download gff for BO07610.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8618287..8618498 622..833 100 -> Minus
3L 8618556..8619020 157..621 100 -> Minus
3L 8619083..8619220 19..156 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:43:56 Download gff for BO07610.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8611387..8611598 622..833 100 -> Minus
arm_3L 8611656..8612120 157..621 100 -> Minus
arm_3L 8612183..8612320 19..156 100   Minus

BO07610.5prime Sequence

935 bp (800 high quality bases) assembled on 2006-01-06

> BO07610.5prime
GAAGTTATCAGTCGACATGTTCGGAAAAACTCGTCAGTTGCTATTCAGCG
TTTGCATTCGGTCCCCGGTGTGCCGACGATATGTCCCGAAGTTCATCAAG
CGTTCATACGCCTCGCAGGCGGTTAACCAGATGCTGCTGCTCCAGCAGAT
GGACATCTGTGCGGATCAGCCGTCGCGAGCCTTGGTCATAGGCGTCTATG
CGGATGAGGAGGACAAGAACGATGCCGGCATTCTGACCCCCGCCGGCTGG
CGTTATAATCTTCAAAAGACAAATGGTCGTCTGATAGAGGTGCTCCGGAT
GTCGGGACCCATGCCCAAGAGAGGCGAGGCCCGTCTTCTCTTCGCCGTTG
AGCCGGAGCGTATTCCCTATTATTCTGTGGTGGCGGTCGTTGGTCTGGGT
AAGGAGTGCTTGGGCTATAATCCCTATGAGGTCCTGGACGAACAGAAGGA
GGCTATCCGAAGGTCGGTGGCCGCTGCCTGTAGGATTCTCGCCGAGTTGG
ATACCGATCGTATTGAGGTGGAGAACTGCGGACACGCCGAATCGGCTGCC
GAAGGTGCCGCCTTGGGTATCTGGTTGTACCAGGAATTGCGCGATCCCAA
GACCCGAATCTTTGTTCCGGCCATCGATTTGTACGCCACCAAGGACGAGG
TCTGCGACATAGAAGGATGGCGCATTGGGCTGCAAAAGGCTGCCGCGCAG
AACCTGACCCGCCAGTTGCAGGAGATGCCCTCCAACCTTTTGACCCCCAC
TGCCTTTGCCCAGAATGTCGTCGAAGTGCTCTGTAAGTCCGGCGTCAATG
TAGAGGTCAAAGTCGAGGGGTTGGGCTGAGAGCCAGTCGATGCACGCCTT
CTTGGCGGTGGGAAAAGCCTCTTGCGAACCACCAATCTTTCTGGAGCTGA
ACTACTACCGGACCTGCGCGGAGGAGAGAACCATC

BO07610.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6372-PA 1668 CG6372-RA 1..803 17..819 4015 100 Plus
CG32351-PA 1659 CG32351-RA 596..794 621..819 745 94.9 Plus
CG6372-PA 1668 CG6372-RA 801..918 818..935 465 95.7 Plus
CG32351-PA 1659 CG32351-RA 792..882 818..908 405 97.8 Plus
CG32351-PA 1659 CG32351-RA 82..142 107..167 155 90.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap1-RA 2121 CG6372-RA 203..1120 17..935 4495 99.3 Plus
S-Lap2-RA 2093 CG32351-RA 338..1165 107..935 2230 84.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8617437..8618354 17..935 4470 99.3 Plus
3L 28110227 3L 8620225..8621052 107..935 2205 84.7 Plus
Blast to na_te.dros performed on 2015-02-11 03:48:45 has no hits.

BO07610.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:52 Download gff for BO07610.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6372-PA 1..918 17..935 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:10 Download gff for BO07610.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6372-PA 1..918 17..935 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:56:25 Download gff for BO07610.5prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap1-RA 199..1120 14..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:31:37 Download gff for BO07610.5prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap1-RA 199..1120 14..935 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:31:37 Download gff for BO07610.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8617433..8618354 14..935 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:56:25 Download gff for BO07610.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8610533..8611454 14..935 99   Plus

BO07610.complete Sequence

1699 bp (1699 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630858

> BO07610.complete
GAAGTTATCAGTCGACATGTTCGGAAAAACTCGTCAGTTGCTATTCAGCG
TTTGCATTCGGTCCCCGGTGTGCCGACGATATGTCCCGAAGTTCATCAAG
CGTTCATACGCCTCGCAGGCGGTTAACCAGATGCTGCTGCTCCAGCAGAT
GGACATCTGTGCGGATCAGCCGTCGCGAGCCTTGGTCATAGGCGTCTATG
CGGATGAGGAGGACAAGAACGATGCCGGCATTCTGACCCCCGCCGGCTGG
CGTTATAATCTTCAAAAGACAAATGGTCGTCTGATAGAGGTGCTCCGGAT
GTCGGGACCCATGCCCAAGAGAGGCGAGGCCCGTCTTCTCTTCGCCGTTG
AGCCGGAGCGTATTCCCTATTATTCTGTGGTGGCGGTCGTTGGTCTGGGT
AAGGAGTGCTTGGGCTATAATCCCTATGAGGTCCTGGACGAACAGAAGGA
GGCTATCCGAAGGTCGGTGGCCGCTGCCTGTAGGATTCTCGCCGAGTTGG
ATACCGATCGTATTGAGGTGGAGAACTGCGGACACGCCGAATCGGCTGCC
GAAGGTGCCGCCTTGGGTATCTGGTTGTACCAGGAATTGCGCGATCCCAA
GACCCGAATCTTTGTTCCGGCCATCGATTTGTACGCCACCAAGGACGAGG
TCTGCGACATAGAAGGATGGCGCATTGGGCTGCAAAAGGCTGCCGCGCAG
AACCTGACCCGCCAGTTGCAGGAGATGCCCTCCAACCTTTTGACCCCCAC
TGCCTTTGCCCAGAATGTCGTCGAAGTGCTCTGTAAGTCCGGCGTCAATG
TAGAGGTCAAAGTCGAGGGTTGGGCTGAGAGCCAGTCGATGCACGCCTTC
TTGGCGGTGGGAAAGGCCTCTTGCGAACCACCAATCTTTCTGGAGCTGAG
CTACTACGGCACCTGCGCGGAGGAGAGACCCATCGTCCTGGTTGGACAGG
GCATCACCTACGATGCCGGCGGTCTGTGCCTGAAGAAAAAGAAGGAGCTC
TTCAACATGCGCGGCGACATGACTGGAGCGGCTGTGGTGGTGGCCACATG
TCGGGCCGTTGCTGGACTTAGATTGCCTGTCAATATCCGAGGCCTTATTC
CTCTGTGCGAAAACGTCGTTGGCTGCAACTCCTTCCGACCAGGTGACATG
GTCAAGTCTATGAATGGCAAGACCATTGAGGTGCAGTGCACGGATCACGA
GGATGTCTTGGTTCTGGCCGATGCCCTGCTGTATGCCCAGAACTTCTGCC
CCAAGTGCATCATTGACATCGGCACCTGTTCGGGATACATGCGTCAGTCC
CTCGACGAAGCTGCTTGCGGTGTGTTCACCAACTCCGAGATCCTTTGGCA
GCAGATCAAGCACGCCAGCATGCACACTGGAGACCGCGTGTGGCGCTTCC
CGTTGTGGAACTTCTACAGCAAGGCGGTTCGTGCCGGAGGACGAAGTGAT
GTCCAGAACTACGGTATCGGTCGTGGTGGACGCCCTTGCAAGGCTGCCGC
CTTCCTTCGTGAATTTGTGCCTTGCGGCCAATGGATGCATATTGATGCCA
CCAATGTGATGGTCACCAACGGTATTGACTTCGAGTACCTGCGACGCGGA
ATGGCTGGCCGACCCACTCGTACTCTTATCGAATTCATTGCACAGACGAT
CTGCAAAGACACCGCTCCCAAGATGGGCAAGGCAAGCTTTCTAGACCAT

BO07610.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap1-RA 1668 CG6372-PA 1..1665 17..1681 8325 100 Plus
S-Lap2-RA 1659 CG32351-PA 82..1647 107..1672 4230 84.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap1-RA 2121 CG6372-RA 203..1867 17..1681 8325 100 Plus
S-Lap2-RA 2093 CG32351-RA 338..1903 107..1672 4230 84.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8617437..8618500 17..1080 5320 100 Plus
3L 28110227 3L 8620225..8621183 107..1065 2590 84.7 Plus
3L 28110227 3L 8618556..8619021 1079..1544 2330 100 Plus
3L 28110227 3L 8621252..8621717 1079..1544 1475 87.8 Plus
3L 28110227 3L 8619083..8619220 1544..1681 690 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:01:15 has no hits.

BO07610.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:40 Download gff for BO07610.complete
Subject Subject Range Query Range Percent Splice Strand
CG6372-RA 1..1668 17..1682 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:31 Download gff for BO07610.complete
Subject Subject Range Query Range Percent Splice Strand
CG6372-RA 199..1867 14..1681 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:07 Download gff for BO07610.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap1-RA 208..1867 22..1683 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:40 Download gff for BO07610.complete
Subject Subject Range Query Range Percent Splice Strand
CG6372-RA 199..1867 14..1681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:27 Download gff for BO07610.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap1-RA 208..1867 22..1683 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:27 Download gff for BO07610.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8617442..8618498 22..1078 100 -> Plus
3L 8618556..8619020 1079..1543 100 -> Plus
3L 8619083..8619220 1544..1683 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:07 Download gff for BO07610.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8610542..8611598 22..1078 100 -> Plus
arm_3L 8611656..8612120 1079..1543 100 -> Plus
arm_3L 8612183..8612320 1544..1683 98   Plus

BO07610.pep Sequence

Translation from 16 to 1699

> BO07610.pep
MFGKTRQLLFSVCIRSPVCRRYVPKFIKRSYASQAVNQMLLLQQMDICAD
QPSRALVIGVYADEEDKNDAGILTPAGWRYNLQKTNGRLIEVLRMSGPMP
KRGEARLLFAVEPERIPYYSVVAVVGLGKECLGYNPYEVLDEQKEAIRRS
VAAACRILAELDTDRIEVENCGHAESAAEGAALGIWLYQELRDPKTRIFV
PAIDLYATKDEVCDIEGWRIGLQKAAAQNLTRQLQEMPSNLLTPTAFAQN
VVEVLCKSGVNVEVKVEGWAESQSMHAFLAVGKASCEPPIFLELSYYGTC
AEERPIVLVGQGITYDAGGLCLKKKKELFNMRGDMTGAAVVVATCRAVAG
LRLPVNIRGLIPLCENVVGCNSFRPGDMVKSMNGKTIEVQCTDHEDVLVL
ADALLYAQNFCPKCIIDIGTCSGYMRQSLDEAACGVFTNSEILWQQIKHA
SMHTGDRVWRFPLWNFYSKAVRAGGRSDVQNYGIGRGGRPCKAAAFLREF
VPCGQWMHIDATNVMVTNGIDFEYLRRGMAGRPTRTLIEFIAQTICKDTA
PKMGKASFLDH

BO07610.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap1-PA 555 CG6372-PA 1..555 1..555 2923 100 Plus
S-Lap2-PA 552 CG32351-PA 1..552 1..555 2637 89.1 Plus
S-Lap8-PA 534 CG4439-PA 50..534 54..547 985 40.6 Plus
S-Lap5-PA 549 CG18369-PA 61..548 54..549 963 41.3 Plus
S-Lap3-PD 535 CG32063-PD 47..532 54..548 944 39.5 Plus