Clone Sequence Records
BO07611.3prime Sequence
937 bp (846 high quality bases) assembled on 2006-01-06
> BO07611.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGGCATCGATGATGATCTCGTCGCCCG
ACTGGATGTTGTAGCTGTACAACTGCTTGTTGGGGTACCTCATCTCCTCC
GGCCCGAATTCCTTGTAGTCCTGATCCAGATAGTAGAGGCGCATCTTGTT
GGGCGCCAGACCCACCAGCTTCTCCAGCTTCACCTTCAAATCGTTGACGG
TCAGATAGATGTCCACGAACCGGCTCTCGCTCACATCGTTGTAGGTGAAC
AGGACCTTGACCCGCTTGTCTGGTTTCAGGCTCACATTGACCAAGGGATC
CAGCTTGCCGTGGATCTGCAGAAGCTCTTGGTAGCGCGCAGGCCGTTCCT
CCTCCGGCTTGTCCATATAGTATCTGACAAAAGCTCGCTCCGAGTCGACG
CGCTCATCGCTACTGATCTTGCCGCCTCCGTTGAGCATCTCCACGTTGGG
CAGCCTGGCTATCAGGAGCTGCCTTCTCTCGTGCTCCGTGCACTCCAGAC
TTTCCCAGAGGGGCCAGTGTTTCACACGGAGGTTGCGTAGCTCGCTAAAC
TTGGCCAGCTCATCGATGGCCGCCCAGCTATCCAGTTGCGCGGAACTTAG
GTTCAAAAGCCTCAGGCTGGGGAAGTATCTATGTGTCTCGCTGCTCTCCT
CGGCCTGCAGCGATTTGATGGGACAGTCTGCCAGAACGAGGGCCTCGAGG
TTGGGAAACAGCCGGCCCAGCCGGCAGATTTCCTGCCAGTGCTCGACGGG
ATTACCGGTGAAATGCAGGGTCTTTAGAGCAGGATGTGCTTTGGTGATTC
GCCGCTCGGTTTCCTCTGGCGTTTCCGTTTCCTGCAGCCGCTGTTCCGCC
TCCTCAGCATCGATCAGCACCTGCCTGTAGTTGTTCAGGCTGAGATGCAG
TTCCTGGAGCACGGGCAAATTCTTCAGCAGGGTATCC
BO07611.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12214-PB | 1380 | CG12214-RB | 459..1377 | 937..19 | 4595 | 100 | Minus |
| CG12214-PA | 1380 | CG12214-RA | 459..1377 | 937..19 | 4595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mlt-RC | 2669 | CG12214-RC | 994..1912 | 937..19 | 4595 | 100 | Minus |
| mlt-RA | 2195 | CG12214-RA | 994..1912 | 937..19 | 4595 | 100 | Minus |
| mlt-RB | 2542 | CG12214-RB | 1341..2259 | 937..19 | 4595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10156673..10157591 | 19..937 | 4595 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 14:11:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 2799..2853 | 928..874 | 113 | 67.3 | Minus |
BO07611.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:53 Download gff for
BO07611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12214-PA | 459..1380 | 16..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:11 Download gff for
BO07611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12214-PA | 459..1380 | 16..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:06:09 Download gff for
BO07611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mlt-RB | 1341..2265 | 13..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:14 Download gff for
BO07611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mlt-RB | 1341..2265 | 13..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:14 Download gff for
BO07611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10156667..10157591 | 13..937 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:06:09 Download gff for
BO07611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6044172..6045096 | 13..937 | 99 | | Plus |
BO07611.5prime Sequence
926 bp (754 high quality bases) assembled on 2006-01-06
> BO07611.5prime
GAAGTTATCAGTCGACATGCCTTCCCTTTTGGAGGCGCTGGAGCGCAAGT
ACTTCGCAGAATGCGAATTCGAGAATGCCCACCAACCGGAACTCCACAAA
CGAAGCGACCTGCCCAATGACTTTACGGTCACCAAGTGCGGCGGACGCAT
GGAGTTCTCCATCTTCATACCCCGCCTATCCCCGCTGACCAGTGTGCCAG
CCTTGCTAGTCCTCAACGACTGTGACATCGATTCGGCCGGGGACTTCGAC
AGCATCCGGGAGAAGTGCCAGCGGGTGAGGGAACTGGATCTGGCCCAGAA
CAAGCTGAGCGACTGGTCGGAGGTCTTCAGCATACTGGAGCACATGCCGC
GCATTGAGTTCCTCAACCTGAGCAAGAACCAGCTGGCCAGTCCGATCGGC
ACGTTGCCCACGGCTCCCACGATCAATCTGAAGAGCCTGGTGCTGAACGG
CACCTACTTGGACTGGGCCTGCGTGGATACCCTGCTGAAGAATTTGCCCG
TGCTCCAGGAACTGCATCTCAGCCTGAACAACTACAGGCAGGTGCTGATC
GATGCTGAGGAGGCGGAACAGCGGCTGCAGGAAACGGAAACGCCAGAGGA
AACCGAGCGGCGAATCACCAAAGCACATCCTGCTCTAAAGACCCTGCATT
TCACCGGTAATCCCGTCGAGCACTGGCAGGAAATCTGCCGGCTGGGCCGG
CTGTTTCCCAACCTCGAGGCCCTCGTTCTGGCAGACTGTCCCATCAAATC
GCTGCAGGCCGAGGAGAGCAGCGAGACACATAGATACTTCCCCAGCCTGA
GGCTTTTGAACCTAAGTTCCGCGCAACTGGATAGCTGGGCGGCCATCGAT
GAGCTGGCCAAGTTTAGCGAGCTACGCAACCTCCGTGTGAAACACTGGCC
CCTCTGGGAAAGTCTGGAGTGCACGG
BO07611.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:06:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12214-PB | 1380 | CG12214-RB | 1..910 | 17..926 | 4550 | 100 | Plus |
| CG12214-PA | 1380 | CG12214-RA | 1..910 | 17..926 | 4550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mlt-RC | 2669 | CG12214-RC | 536..1445 | 17..926 | 4550 | 100 | Plus |
| mlt-RA | 2195 | CG12214-RA | 536..1445 | 17..926 | 4550 | 100 | Plus |
| mlt-RB | 2542 | CG12214-RB | 883..1792 | 17..926 | 4550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10157140..10158049 | 926..17 | 4550 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 10:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 2799..2853 | 484..538 | 113 | 67.3 | Plus |
BO07611.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:23:54 Download gff for
BO07611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12214-PA | 1..910 | 17..926 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:13 Download gff for
BO07611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12214-PA | 1..910 | 17..926 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:45:40 Download gff for
BO07611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mlt-RB | 878..1792 | 12..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:01:03 Download gff for
BO07611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mlt-RB | 878..1792 | 12..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:01:03 Download gff for
BO07611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10157140..10158054 | 12..926 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:45:40 Download gff for
BO07611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6044645..6045559 | 12..926 | 99 | | Minus |
BO07611.complete Sequence
1411 bp assembled on 2007-10-17
GenBank Submission: FJ630859
> BO07611.complete
GAAGTTATCAGTCGACATGCCTTCCCTTTTGGAGGCGCTGGAGCGCAAGT
ACTTCGCAGAATGCGAATTCGAGAATGCCCACCAACCGGAACTCCACAAA
CGAAGCGACCTGCCCAATGACTTTACGGTCACCAAGTGCGGCGGACGCAT
GGAGTTCTCCATCTTCATACCCCGCCTATCCCCGCTGACCAGTGTGCCAG
CCTTGCTAGTCCTCAACGACTGTGACATCGATTCGGCCGGGGACTTCGAC
AGCATCCGGGAGAAGTGCCAGCGGGTGAGGGAACTGGATCTGGCCCAGAA
CAAGCTGAGCGACTGGTCGGAGGTCTTCAGCATACTGGAGCACATGCCGC
GCATTGAGTTCCTCAACCTGAGCAAGAACCAGCTGGCCAGTCCGATCGGC
ACGTTGCCCACGGCTCCCACGATCAATCTGAAGAGCCTGGTGCTGAACGG
CACCTACTTGGACTGGGCCTGCGTGGATACCCTGCTGAAGAATTTGCCCG
TGCTCCAGGAACTGCATCTCAGCCTGAACAACTACAGGCAGGTGCTGATC
GATGCTGAGGAGGCGGAACAGCGGCTGCAGGAAACGGAAACGCCAGAGGA
AACCGAGCGGCGAATCACCAAAGCACATCCTGCTCTAAAGACCCTGCATT
TCACCGGTAATCCCGTCGAGCACTGGCAGGAAATCTGCCGGCTGGGCCGG
CTGTTTCCCAACCTCGAGGCCCTCGTTCTGGCAGACTGTCCCATCAAATC
GCTGCAGGCCGAGGAGAGCAGCGAGACACATAGATACTTCCCCAGCCTGA
GGCTTTTGAACCTAAGTTCCGCGCAACTGGATAGCTGGGCGGCCATCGAT
GAGCTGGCCAAGTTTAGCGAGCTACGCAACCTCCGTGTGAAACACTGGCC
CCTCTGGGAAAGTCTGGAGTGCACGGAGCACGAGAGAAGGCAGCTCCTGA
TAGCCAGGCTGCCCAACGTGGAGATGCTCAACGGAGGCGGCAAGATCAGT
AGCGATGAGCGCGTCGACTCGGAGCGAGCTTTTGTCAGATACTATATGGA
CAAGCCGGAGGAGGAACGGCCTGCGCGCTACCAAGAGCTTCTGCAGATCC
ACGGCAAGCTGGATCCCTTGGTCAATGTGAGCCTGAAACCAGACAAGCGG
GTCAAGGTCCTGTTCACCTACAACGATGTGAGCGAGAGCCGGTTCGTGGA
CATCTATCTGACCGTCAACGATTTGAAGGTGAAGCTGGAGAAGCTGGTGG
GTCTGGCGCCCAACAAGATGCGCCTCTACTATCTGGATCAGGACTACAAG
GAATTCGGGCCGGAGGAGATGAGGTACCCCAACAAGCAGTTGTACAGCTA
CAACATCCAGTCGGGCGACGAGATCATCATCGATGCCAAGAAGGCAAGCT
TTCTAGACCAT
BO07611.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mlt-RC | 1380 | CG12214-PC | 1..1377 | 17..1393 | 6885 | 100 | Plus |
| mlt-RA | 1380 | CG12214-PA | 1..1377 | 17..1393 | 6885 | 100 | Plus |
| mlt-RB | 1380 | CG12214-PB | 1..1377 | 17..1393 | 6885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mlt-RC | 2669 | CG12214-RC | 536..1912 | 17..1393 | 6885 | 100 | Plus |
| mlt-RA | 2195 | CG12214-RA | 536..1912 | 17..1393 | 6885 | 100 | Plus |
| mlt-RB | 2542 | CG12214-RB | 883..2259 | 17..1393 | 6885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:39:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10156673..10158049 | 1393..17 | 6885 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:39:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 2799..2853 | 484..538 | 113 | 67.3 | Plus |
BO07611.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:21 Download gff for
BO07611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12214-RA | 1..1380 | 17..1396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:36 Download gff for
BO07611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12214-RA | 513..1900 | 12..1399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:55 Download gff for
BO07611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mlt-RB | 883..2259 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:32 Download gff for
BO07611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12214-RA | 518..1894 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:44 Download gff for
BO07611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mlt-RB | 883..2259 | 17..1395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:44 Download gff for
BO07611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10156670..10158049 | 17..1395 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:55 Download gff for
BO07611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6044175..6045554 | 17..1395 | 99 | | Minus |
BO07611.pep Sequence
Translation from 16 to 1411
> BO07611.pep
MPSLLEALERKYFAECEFENAHQPELHKRSDLPNDFTVTKCGGRMEFSIF
IPRLSPLTSVPALLVLNDCDIDSAGDFDSIREKCQRVRELDLAQNKLSDW
SEVFSILEHMPRIEFLNLSKNQLASPIGTLPTAPTINLKSLVLNGTYLDW
ACVDTLLKNLPVLQELHLSLNNYRQVLIDAEEAEQRLQETETPEETERRI
TKAHPALKTLHFTGNPVEHWQEICRLGRLFPNLEALVLADCPIKSLQAEE
SSETHRYFPSLRLLNLSSAQLDSWAAIDELAKFSELRNLRVKHWPLWESL
ECTEHERRQLLIARLPNVEMLNGGGKISSDERVDSERAFVRYYMDKPEEE
RPARYQELLQIHGKLDPLVNVSLKPDKRVKVLFTYNDVSESRFVDIYLTV
NDLKVKLEKLVGLAPNKMRLYYLDQDYKEFGPEEMRYPNKQLYSYNIQSG
DEIIIDAKKASFLDH
BO07611.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mlt-PC | 459 | CG12214-PC | 1..459 | 1..459 | 2390 | 100 | Plus |
| mlt-PA | 459 | CG12214-PA | 1..459 | 1..459 | 2390 | 100 | Plus |
| mlt-PB | 459 | CG12214-PB | 1..459 | 1..459 | 2390 | 100 | Plus |
